Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.9e-103 377.5 183 100.0
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.0e-98 362.5 190 94.2
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.9e-79 297.7 228 68.4
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.6e-68 263.1 245 58.4
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 7.0e-64 247.7 241 55.6
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.7e-62 243.0 241 54.8
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 1.7e-62 243.0 245 54.3
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 2.3e-62 242.7 242 54.5
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.3e-62 242.7 241 54.4
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 6.8e-59 231.1 244 52.0
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 6.8e-59 231.1 244 52.0
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 1.2e-58 230.3 245 50.6
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 1.5e-58 229.9 244 52.0
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 1.5e-58 229.9 241 52.7
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 4.4e-58 228.4 244 52.5
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 4.4e-58 228.4 244 51.6
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 5.8e-58 228.0 241 52.7
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 9.9e-58 227.3 243 49.8
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 9.9e-58 227.3 244 50.4
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.3e-57 226.9 243 50.2
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 1.7e-57 226.5 240 52.5
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 2.9e-57 225.7 240 51.2
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 3.7e-57 225.3 242 51.7
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 3.7e-57 225.3 244 50.8
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 6.4e-57 224.6 240 51.7
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.4e-56 223.4 239 51.0
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 1.4e-56 223.4 243 49.8
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 1.9e-56 223.0 240 51.2
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 2.4e-56 222.6 244 48.4
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 4.1e-56 221.9 239 51.9
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 4.1e-56 221.9 270 46.3
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 7.1e-56 221.1 241 49.0
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 7.1e-56 221.1 244 48.8
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 7.1e-56 221.1 245 49.0
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 9.2e-56 220.7 244 49.2
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 1.6e-55 219.9 240 50.8
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 1.6e-55 219.9 241 50.2
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 2.1e-55 219.5 242 50.0
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 1.3e-54 216.9 242 47.1
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 1.7e-54 216.5 245 48.2
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 3.0e-54 215.7 243 48.6
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 3.9e-54 215.3 244 49.6
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 5.1e-54 214.9 243 48.1
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 5.1e-54 214.9 242 50.8
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.9e-53 213.0 223 51.6
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 3.3e-53 212.2 245 47.3
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 4.3e-53 211.8 242 49.6
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 7.3e-53 211.1 242 49.6
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 9.5e-53 210.7 244 50.0
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.2e-52 210.3 240 50.0
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 3.6e-52 208.8 240 48.3
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 4.7e-52 208.4 244 48.0
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 4.7e-52 208.4 242 48.8
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 1.4e-51 206.8 240 46.7
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 1.4e-51 206.8 240 46.7
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.4e-51 206.8 247 49.8
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 2.4e-51 206.1 244 47.1
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 3.1e-51 205.7 240 47.5
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 8.9e-51 204.1 240 46.7
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.5e-50 203.4 240 47.1
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 2.0e-50 203.0 240 47.1
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 4.4e-50 201.8 240 46.2
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 5.8e-50 201.4 240 46.7
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 5.8e-50 201.4 240 48.3
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 7.6e-50 201.1 241 48.5
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 7.6e-50 201.1 240 45.8
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 7.6e-50 201.1 240 47.9
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 9.9e-50 200.7 241 48.1
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.3e-49 200.3 241 46.9
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 1.7e-49 199.9 241 46.1
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 2.9e-49 199.1 240 46.2
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 4.9e-49 198.4 240 47.9
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 4.9e-49 198.4 240 45.8
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.4e-48 196.8 238 45.0
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.4e-48 196.8 239 46.4
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 3.2e-48 195.7 240 45.4
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 4.1e-48 195.3 240 47.1
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 7.1e-48 194.5 240 46.2
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 1.2e-47 193.7 241 47.3
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 1.2e-47 193.7 240 45.4
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 3.5e-47 192.2 240 46.2
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 7.8e-47 191.0 240 45.8
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.0e-46 190.7 205 51.2
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.0e-46 190.7 205 51.2
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 1.3e-46 190.3 240 44.2
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 7.3e-45 184.5 222 44.6
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 7.3e-45 184.5 206 46.6
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 3.1e-43 179.1 199 50.3
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 3.1e-43 179.1 242 42.1
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 7.1e-40 167.9 237 39.2
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 1.6e-39 166.8 261 39.8
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.0e-39 164.9 177 50.8
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 3.0e-38 162.5 227 44.1
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 5.1e-38 161.8 220 43.2
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 1.9e-37 159.8 216 43.1
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 9.6e-37 157.5 235 37.9
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 3.6e-36 155.6 240 39.2
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 2.4e-35 152.9 237 35.9
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 5.3e-35 151.8 237 36.3
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 7.6e-34 147.9 190 43.7
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.9e-32 143.3 191 41.9
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.9e-32 143.3 214 41.1
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 2.4e-32 142.9 158 49.4
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.4e-32 142.9 151 50.3
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 9.3e-32 141.0 179 46.4
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 1.6e-31 140.2 188 43.1
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 1.0e-30 137.5 161 49.1
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.0e-30 137.5 133 54.1
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.1e-29 134.0 169 46.7
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 3.7e-28 129.0 150 45.3
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 8.1e-28 127.9 175 45.7
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.1e-27 127.5 162 40.1
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 5.8e-26 121.7 146 46.6
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.2e-25 119.8 145 46.2
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 8.4e-25 117.9 81 67.9
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.1e-24 117.5 170 40.0
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.9e-21 106.7 145 43.4
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 1.6e-20 103.6 81 59.3
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 8.2e-20 101.3 99 50.5
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 8.2e-20 101.3 76 60.5
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 2.6e-18 96.3 116 44.8
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 3.0e-14 82.8 216 27.3
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.6e-12 77.0 56 64.3
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.1e-11 74.3 56 67.9
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 1.1e-11 74.3 123 36.6
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 7.7e-10 68.2 82 50.0
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.9e-09 66.2 63 49.2


User provided reference genes

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