Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 2.4e-156 555.4 280 100.0
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 9.5e-145 516.9 278 92.4
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 9.5e-145 516.9 278 92.4
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.8e-143 512.7 284 90.5
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.5e-142 509.6 280 90.7
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.5e-142 509.6 280 90.4
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 2.6e-142 508.8 275 91.6
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 5.8e-142 507.7 285 89.8
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 7.5e-142 507.3 281 88.3
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.3e-141 506.5 285 89.5
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 2.2e-141 505.8 274 91.2
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 3.7e-141 505.0 287 88.5
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 8.3e-141 503.8 298 84.9
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 8.3e-141 503.8 274 92.0
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 8.3e-141 503.8 273 90.8
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 7.1e-140 500.7 290 88.3
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 9.2e-140 500.4 289 87.2
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 9.2e-140 500.4 296 85.8
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 1.6e-139 499.6 273 90.1
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 2.1e-139 499.2 291 86.9
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 2.1e-139 499.2 289 87.2
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.5e-139 498.4 275 90.2
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 6.0e-139 497.7 274 89.4
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 6.0e-139 497.7 273 90.5
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 1.3e-138 496.5 274 89.1
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 1.3e-138 496.5 287 86.1
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 1.7e-138 496.1 273 90.1
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.7e-138 496.1 298 84.9
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 2.3e-138 495.7 275 90.2
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 2.3e-138 495.7 291 86.9
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 3.0e-138 495.4 273 90.1
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.0e-138 495.4 275 89.8
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 3.0e-138 495.4 275 89.8
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 8.6e-138 493.8 278 87.4
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.1e-137 493.4 276 89.5
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 1.1e-137 493.4 267 92.1
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 1.9e-137 492.7 274 90.1
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.9e-137 492.7 275 89.1
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 2.5e-137 492.3 274 89.4
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.2e-136 490.0 276 88.8
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.6e-136 489.6 298 83.9
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 2.8e-136 488.8 278 86.7
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.1e-135 486.9 281 85.4
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.8e-135 486.1 272 89.3
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 6.8e-135 484.2 286 82.9
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 1.2e-134 483.4 289 84.4
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 1.2e-134 483.4 292 82.5
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 1.2e-134 483.4 277 85.6
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.5e-134 483.0 317 79.5
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 2.0e-134 482.6 278 86.0
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.8e-134 481.1 322 78.3
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 5.8e-134 481.1 321 76.9
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 7.6e-134 480.7 273 87.5
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 1.7e-133 479.6 273 86.4
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 2.9e-133 478.8 273 87.5
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 4.9e-133 478.0 278 87.1
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 8.4e-133 477.2 278 85.3
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 1.4e-132 476.5 282 84.0
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 1.4e-132 476.5 277 86.3
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 1.4e-132 476.5 277 86.3
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 1.9e-132 476.1 297 81.8
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 2.4e-132 475.7 273 86.4
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 2.4e-132 475.7 273 86.4
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 7.1e-132 474.2 278 83.8
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 9.2e-132 473.8 278 84.9
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.2e-131 473.4 274 85.0
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 2.7e-131 472.2 275 85.8
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 7.8e-131 470.7 282 81.6
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 3.0e-130 468.8 280 82.9
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 5.1e-130 468.0 275 84.7
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.1e-130 468.0 296 82.1
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 6.6e-130 467.6 287 83.3
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 1.1e-129 466.8 280 85.7
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 9.6e-129 463.8 297 79.1
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 2.8e-128 462.2 273 81.7
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 1.1e-127 460.3 282 81.6
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.1e-127 460.3 273 83.2
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 1.4e-127 459.9 275 82.2
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 3.1e-127 458.8 304 78.9
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 6.9e-127 457.6 290 79.7
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 2.6e-126 455.7 284 83.1
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 1.3e-125 453.4 249 89.6
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 1.3e-125 453.4 289 80.3
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 4.9e-125 451.4 282 79.4
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 6.4e-125 451.1 282 81.9
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 6.4e-125 451.1 281 79.0
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 1.1e-124 450.3 310 74.8
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 1.4e-124 449.9 290 79.7
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 2.4e-124 449.1 292 77.7
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 3.2e-124 448.7 323 74.0
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 5.4e-124 448.0 273 81.0
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 5.4e-124 448.0 334 72.2
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 7.1e-124 447.6 278 80.2
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 7.1e-124 447.6 308 75.6
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 9.3e-124 447.2 269 78.4
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 1.2e-123 446.8 273 81.7
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 1.6e-123 446.4 291 77.7
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 1.6e-123 446.4 291 77.7
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 2.1e-123 446.0 298 76.5
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 1.0e-122 443.7 292 77.4
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 1.0e-122 443.7 276 80.1
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.9e-121 439.5 309 72.8
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 7.3e-121 437.6 280 82.1
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.1e-120 436.0 280 76.8
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 6.2e-120 434.5 273 80.6
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 6.2e-120 434.5 273 80.6
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 3.9e-114 415.2 233 88.4
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 4.0e-111 405.2 222 90.5
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 6.4e-109 397.9 224 87.1
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.1e-108 394.4 264 73.5
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 2.4e-103 379.4 291 69.8
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 4.0e-103 378.6 275 73.1
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 4.0e-103 378.6 293 69.3
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 5.8e-102 374.8 278 70.9
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.7e-99 365.9 244 73.4
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 3.0e-98 362.5 205 88.8
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 5.1e-98 361.7 240 75.8
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 6.9e-95 351.3 183 95.1
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.6e-91 340.1 286 61.9
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 2.7e-91 339.3 288 62.2
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 3.9e-90 335.5 284 61.3
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.0e-89 333.2 264 65.9
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 5.7e-89 331.6 225 76.4
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 6.9e-87 324.7 267 64.8
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 4.5e-86 322.0 298 58.1
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 7.2e-84 314.7 190 83.2
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 1.6e-83 313.5 181 87.3
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 5.1e-82 308.5 202 73.3
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 5.0e-77 292.0 181 80.1
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 1.9e-76 290.0 271 57.6
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 7.0e-71 271.6 246 65.0
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 9.8e-65 251.1 147 85.7
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 8.3e-64 248.1 190 66.8
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 7.2e-52 208.4 111 88.3
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 6.3e-48 195.3 116 85.3
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 6.3e-48 195.3 108 88.0
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.1e-47 194.5 98 93.9
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 1.4e-42 177.6 106 81.1
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 2.3e-42 176.8 110 77.3
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 8.9e-42 174.9 268 40.3
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 5.4e-39 165.6 136 67.6
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 1.0e-37 161.4 94 86.2
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.7e-37 160.6 95 85.3
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 8.1e-35 151.8 83 86.7
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 4.0e-34 149.4 268 34.0
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 1.3e-32 144.4 219 42.0
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 6.4e-32 142.1 104 70.2
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.6e-30 137.5 266 34.2
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 1.9e-28 130.6 247 32.8
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 7.3e-28 128.6 66 92.4
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 6.2e-27 125.6 118 61.0
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 6.2e-27 125.6 118 61.0
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 1.8e-26 124.0 118 61.9
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 3.1e-26 123.2 105 66.7
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 8.9e-26 121.7 118 59.3
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 8.9e-26 121.7 118 59.3
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 1.2e-25 121.3 118 60.2
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 1.3e-24 117.9 118 59.3
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 3.7e-24 116.3 118 58.5
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 5.1e-21 105.9 155 40.6
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 8.6e-21 105.1 87 64.4
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.9e-20 104.0 52 96.2
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 7.3e-20 102.1 155 40.6
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 2.4e-18 97.1 83 63.9
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 4.2e-15 86.3 53 77.4
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 3.9e-13 79.7 46 76.1


User provided reference genes

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