Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15117 Nelumbo nucifera HOM05D000725 ORTHO05D004053 2.2e-87 325.5 154 100.0
Nn1g09202 Nelumbo nucifera HOM05D000725 ORTHO05D004053 4.5e-80 301.2 152 93.4
Nn5g29006 Nelumbo nucifera HOM05D000725 ORTHO05D004053 1.7e-79 299.3 154 92.9
Nn6g34612 Nelumbo nucifera HOM05D000725 ORTHO05D004053 1.7e-79 299.3 154 92.9
Nn2g12181 Nelumbo nucifera HOM05D000725 ORTHO05D004053 2.3e-76 288.9 153 90.8
Nn2g14108 Nelumbo nucifera HOM05D000725 ORTHO05D004053 9.8e-75 283.5 147 93.9
Nn1g06958 Nelumbo nucifera HOM05D000725 ORTHO05D004053 1.2e-51 206.8 114 90.4
Nn2g14179 Nelumbo nucifera HOM05D002850 ORTHO05D004053 1.9e-46 189.5 99 91.9
Cfa001267 Carpinus fangiana HOM05D000725 ORTHO05D004053 1.6e-24 116.7 119 44.5
Aqoxy7G00421 Aquilegia oxysepala HOM05D000725 ORTHO05D004053 2.7e-24 115.9 139 44.6
CSS0025020 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D004053 2.7e-24 115.9 119 47.9
Haze_17278 Corylus avellana HOM05D000725 ORTHO05D004053 6.0e-24 114.8 119 43.7
Haze_17287 Corylus avellana HOM05D000725 ORTHO05D004053 6.0e-24 114.8 119 43.7
Gohir.D06G166900 Gossypium hirsutum HOM05D000725 ORTHO05D004053 3.0e-23 112.5 120 45.8
Gorai.010G194700 Gossypium raimondii HOM05D000725 ORTHO05D004053 3.0e-23 112.5 120 45.8
Manes.10G007800 Manihot esculenta HOM05D000725 ORTHO05D004053 1.5e-22 110.2 119 44.5
TWI73G1060 Tripterygium wilfordii HOM05D000725 ORTHO05D004053 1.5e-22 110.2 149 36.2
QL08p063892 Quercus lobata HOM05D000725 ORTHO05D004053 3.3e-22 109.0 119 42.9
GSVIVG01032746001 Vitis vinifera HOM05D000725 ORTHO05D004053 4.3e-22 108.6 129 41.9
Ciclev10033966m.g Citrus clementina HOM05D000725 ORTHO05D004053 5.6e-22 108.2 118 45.8
PSO765G0016 Papaver somniferum HOM05D000725 ORTHO05D004053 5.6e-22 108.2 130 41.5
Actinidia00658 Actinidia chinensis HOM05D000725 ORTHO05D004053 7.3e-22 107.8 111 45.9
HanXRQChr08g0221881 Helianthus annuus HOM05D000725 ORTHO05D004053 1.6e-21 106.7 117 46.2
CiPaw.01G301800 Carya illinoinensis HOM05D000725 ORTHO05D004053 2.8e-21 105.9 119 41.2
Ciclev10030786m.g Citrus clementina HOM05D000725 ORTHO05D004053 2.8e-21 105.9 118 44.1
Lj1A961T79 Lonicera japonica HOM05D000725 ORTHO05D004053 4.8e-21 105.1 117 44.4
Duzib106G0872 Durio zibethinus HOM05D000725 ORTHO05D004053 8.1e-21 104.4 109 45.9
unitig_46.g18735 Utricularia gibba HOM05D000725 ORTHO05D004053 8.1e-21 104.4 118 42.4
MSTRG.8922 Avicennia marina HOM05D000725 ORTHO05D004053 1.1e-20 104.0 118 39.8
Gohir.A06G160900 Gossypium hirsutum HOM05D000725 ORTHO05D004053 1.1e-20 104.0 120 43.3
Oeu023910.1 Olea europaea HOM05D000725 ORTHO05D004053 1.8e-20 103.2 118 40.7
ECA233G5578 Erigeron canadensis HOM05D000725 ORTHO05D004053 2.4e-20 102.8 119 44.5
vmacro09999 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 2.4e-20 102.8 123 40.7
Duzib114G0648 Durio zibethinus HOM05D000725 ORTHO05D004053 3.1e-20 102.4 118 42.4
Lj8C62G8 Lonicera japonica HOM05D000725 ORTHO05D004053 4.0e-20 102.1 140 37.1
Thecc.10G009700 Theobroma cacao HOM05D000725 ORTHO05D004053 6.9e-20 101.3 118 41.5
COL.COLO4_25795 Corchorus olitorius HOM05D000725 ORTHO05D004053 9.0e-20 100.9 119 42.0
PSO349G0143 Papaver somniferum HOM05D000725 ORTHO05D004053 2.0e-19 99.8 130 40.8
Cpa.g.sc19.122 Carica papaya HOM05D000725 ORTHO05D004053 2.6e-19 99.4 120 42.5
Cc02_g05980 Coffea canephora HOM05D000725 ORTHO05D004053 4.4e-19 98.6 142 38.7
Peaxi162Scf00284g00316 Petunia axillaris HOM05D000725 ORTHO05D004053 4.4e-19 98.6 121 38.0
Lsat_1_v5_gn_8_13481 Lactuca sativa HOM05D000725 ORTHO05D004053 1.7e-18 96.7 104 45.2
Atru.chr12.108 Acer truncatum HOM05D000725 ORTHO05D004053 2.2e-18 96.3 87 49.4
Ah.16g103940 Amaranthus hybridus HOM05D000725 ORTHO05D004053 2.2e-18 96.3 145 40.0
Lsat_1_v5_gn_8_13121 Lactuca sativa HOM05D000725 ORTHO05D004053 2.2e-18 96.3 123 42.3
Nitab4.5_0000058g0030 Nicotiana tabacum HOM05D000725 ORTHO05D004053 2.9e-18 95.9 141 35.5
Nitab4.5_0001817g0060 Nicotiana tabacum HOM05D000725 ORTHO05D004053 2.9e-18 95.9 141 36.9
Potri.008G073500 Populus trichocarpa HOM05D000725 ORTHO05D004053 2.9e-18 95.9 125 37.6
SGA_v2.0_scaffold618G53215 Striga asiatica HOM05D000725 ORTHO05D004053 2.9e-18 95.9 111 40.5
vmacro10000 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 2.9e-18 95.9 117 41.0
vmacro06943 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 3.8e-18 95.5 117 39.3
Actinidia29727 Actinidia chinensis HOM05D000725 ORTHO05D004053 6.4e-18 94.7 145 38.6
RcHm_v2.0_Chr1g0371111 Rosa chinensis HOM05D000725 ORTHO05D004053 6.4e-18 94.7 144 37.5
Sabra10G0141000 Salix brachista HOM05D000725 ORTHO05D004053 1.1e-17 94.0 127 37.8
PGSC0003DMG400023950 Solanum tuberosum HOM05D000725 ORTHO05D004053 1.4e-17 93.6 122 36.1
Migut.F00630 Erythranthe guttata HOM05D000725 ORTHO05D004053 1.9e-17 93.2 118 39.8
FAN03G2016 Fragaria x ananassa HOM05D000725 ORTHO05D004053 1.9e-17 93.2 144 37.5
Rhsim09G0180400 Rhododendron simsii HOM05D000725 ORTHO05D004053 1.9e-17 93.2 117 38.5
CANSAT56G0874 Cannabis sativa HOM05D000725 ORTHO05D004053 2.4e-17 92.8 118 40.7
CAN.G830.1 Capsicum annuum HOM05D000725 ORTHO05D004053 3.2e-17 92.4 122 36.9
AUR62022951 Chenopodium quinoa HOM05D000725 ORTHO05D004053 4.2e-17 92.0 119 37.8
FAN10G2086 Fragaria x ananassa HOM05D000725 ORTHO05D004053 4.2e-17 92.0 144 36.8
EL10Ac2g04901 Beta vulgaris HOM05D000725 ORTHO05D004053 5.4e-17 91.7 119 38.7
FvH4_7g25190 Fragaria vesca HOM05D000725 ORTHO05D004053 5.4e-17 91.7 144 36.8
Sabra08G0054700 Salix brachista HOM05D000725 ORTHO05D004053 5.4e-17 91.7 126 37.3
Eucgr.J00168 Eucalyptus grandis HOM05D000725 ORTHO05D004053 7.1e-17 91.3 111 41.4
Hma1.2p1_1013F.1_g247700 Hydrangea macrophylla HOM05D000725 ORTHO05D004053 9.3e-17 90.9 125 40.0
Rhsim03G0147600 Rhododendron simsii HOM05D000725 ORTHO05D004053 9.3e-17 90.9 123 37.4
Sopen06g016030 Solanum pennellii HOM05D000725 ORTHO05D004053 9.3e-17 90.9 122 35.2
Phvul.001G246400 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 1.2e-16 90.5 112 40.2
SGA_v2.0_scaffold437G51620 Striga asiatica HOM05D000725 ORTHO05D004053 1.2e-16 90.5 118 39.0
Prupe.2G256800 Prunus persica HOM05D000725 ORTHO05D004053 2.7e-16 89.4 133 35.3
FAN06G2284 Fragaria x ananassa HOM05D000725 ORTHO05D004053 3.5e-16 89.0 144 36.1
LjContig00357g0008885 Lotus japonicus HOM05D000725 ORTHO05D004053 3.5e-16 89.0 107 37.4
Solyc06g050510.3 Solanum lycopersicum HOM05D000725 ORTHO05D004053 3.5e-16 89.0 122 34.4
AUR62012311 Chenopodium quinoa HOM05D000725 ORTHO05D004053 4.6e-16 88.6 143 35.0
DCAR_011852 Daucus carota HOM05D000725 ORTHO05D004053 1.0e-15 87.4 148 33.8
Hund13529 Selenicereus undatus HOM05D000725 ORTHO05D004053 1.0e-15 87.4 146 37.0
HPP92_003690 Vanilla planifolia HOM05D000725 ORTHO05D004053 1.3e-15 87.0 153 37.9
MBI04_g43202_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D004053 1.7e-15 86.7 164 32.3
Sc11g0005370 Simmondsia chinensis HOM05D000725 ORTHO05D004053 3.0e-15 85.9 131 35.9
Lalb_Chr10g0105301 Lupinus albus HOM05D000725 ORTHO05D004053 6.6e-15 84.7 144 34.7
PGR044G2605 Punica granatum HOM05D000725 ORTHO05D004053 8.7e-15 84.3 123 38.2
Psat2g030640 Pisum sativum HOM05D000725 ORTHO05D004053 1.1e-14 84.0 113 38.9
Ca_05997_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 1.9e-14 83.2 112 37.5
Ca_05999_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 1.9e-14 83.2 112 37.5
Lalb_Chr17g0346921 Lupinus albus HOM05D000725 ORTHO05D004053 2.5e-14 82.8 144 33.3
CSS0048207 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D004053 3.3e-14 82.4 139 37.4
Cc06_g20020 Coffea canephora HOM05D000725 ORTHO05D004053 3.3e-14 82.4 111 40.5
Medtr3g071860 Medicago truncatula HOM05D000725 ORTHO05D004053 4.3e-14 82.0 122 35.2
A10p19550 Brassica napus HOM05D000725 ORTHO05D004053 9.6e-14 80.9 111 36.0
Thhalv10012460m.g Eutrema salsugineum HOM05D000725 ORTHO05D004053 9.6e-14 80.9 138 30.4
THA.LOC104811007 Tarenaya hassleriana HOM05D000725 ORTHO05D004053 1.3e-13 80.5 111 37.8
BcaB08g36500 Brassica carinata HOM05D000725 ORTHO05D004053 1.6e-13 80.1 111 35.1
AT3G42670 Arabidopsis thaliana HOM05D000725 ORTHO05D004053 2.1e-13 79.7 111 39.6
BraA10t44031Z Brassica rapa HOM05D000725 ORTHO05D004053 2.1e-13 79.7 111 35.1
ClCG07G004630 Citrullus lanatus HOM05D000725 ORTHO05D004053 2.1e-13 79.7 112 34.8
AL5G20900 Arabidopsis lyrata HOM05D000725 ORTHO05D004053 2.8e-13 79.3 111 39.6
Lj6g0013892 Lotus japonicus HOM05D000725 ORTHO05D004053 2.8e-13 79.3 113 38.9
arahy.Tifrunner.gnm1.ann1.MF2MUZ Arachis hypogaea HOM05D000725 ORTHO05D004053 3.6e-13 79.0 113 34.5
arahy.Tifrunner.gnm1.ann1.Y9Z9L7 Arachis hypogaea HOM05D000725 ORTHO05D004053 3.6e-13 79.0 113 34.5
BcaC04g19431 Brassica carinata HOM05D000725 ORTHO05D004053 3.6e-13 79.0 111 35.1
BolC9t58445H Brassica oleracea HOM05D000725 ORTHO05D004053 3.6e-13 79.0 111 35.1
TPR.G8343 Trifolium pratense HOM05D000725 ORTHO05D004053 3.6e-13 79.0 113 36.3
arahy.Tifrunner.gnm1.ann1.89IITC Arachis hypogaea HOM05D000725 ORTHO05D004053 4.8e-13 78.6 109 40.4
MELO3C018395.2 Cucumis melo HOM05D000725 ORTHO05D004053 4.8e-13 78.6 112 35.7
Glyma.18G023900 Glycine max HOM05D000725 ORTHO05D004053 4.8e-13 78.6 133 33.8
Phvul.008G220500 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 4.8e-13 78.6 112 35.7
CARHR153700 Cardamine hirsuta HOM05D000725 ORTHO05D004053 6.2e-13 78.2 111 36.0
Medtr5g083300 Medicago truncatula HOM05D000725 ORTHO05D004053 6.2e-13 78.2 113 37.2
arahy.Tifrunner.gnm1.ann1.M7CALB Arachis hypogaea HOM05D000725 ORTHO05D004053 8.1e-13 77.8 109 40.4
Carub.0006s1880 Capsella rubella HOM05D000725 ORTHO05D004053 8.1e-13 77.8 111 34.2
Sed0016433 Sechium edule HOM05D000725 ORTHO05D004053 1.1e-12 77.4 133 29.3
AL6G31990 Arabidopsis lyrata HOM05D000725 ORTHO05D004053 1.4e-12 77.0 138 31.2
C09p55760 Brassica napus HOM05D000725 ORTHO05D004053 1.4e-12 77.0 111 34.2
Glyma.U027200 Glycine max HOM05D000725 ORTHO05D004053 1.4e-12 77.0 112 34.8
SHI28808 Sapria himalayana HOM05D000725 ORTHO05D004053 1.4e-12 77.0 112 35.7
AT5G20420 Arabidopsis thaliana HOM05D000725 ORTHO05D004053 1.8e-12 76.6 128 31.2
Sp6g24000 Schrenkiella parvula HOM05D000725 ORTHO05D004053 2.4e-12 76.3 88 38.6
A08p12990 Brassica napus HOM05D000725 ORTHO05D004053 4.0e-12 75.5 119 36.1
BolC8t48449H Brassica oleracea HOM05D000725 ORTHO05D004053 5.3e-12 75.1 119 36.1
CARHR192380 Cardamine hirsuta HOM05D000725 ORTHO05D004053 9.0e-12 74.3 78 42.3
Psat5g144960 Pisum sativum HOM05D000725 ORTHO05D004053 1.2e-11 73.9 122 32.0
Carub.0008s1899 Capsella rubella HOM05D000725 ORTHO05D004053 1.5e-11 73.6 109 34.9
Sp7g16860 Schrenkiella parvula HOM05D000725 ORTHO05D004053 1.5e-11 73.6 136 29.4
CARHR153740 Cardamine hirsuta HOM05D000725 ORTHO05D004053 2.0e-11 73.2 78 43.6
VMungo0647G1332 Vigna mungo HOM05D000725 ORTHO05D004053 2.6e-11 72.8 107 34.6
Medtr7g026650 Medicago truncatula HOM05D000725 ORTHO05D004053 3.4e-11 72.4 123 33.3
BraA08t33283Z Brassica rapa HOM05D000725 ORTHO05D004053 7.6e-11 71.2 119 35.3
CsaV3_5G010570 Cucumis sativus L. HOM05D000725 ORTHO05D004053 7.6e-11 71.2 112 33.9
Glyma.02G261800 Glycine max HOM05D000725 ORTHO05D004053 7.6e-11 71.2 110 36.4
Thhalv10024231m.g Eutrema salsugineum HOM05D000725 ORTHO05D004053 9.9e-11 70.9 111 34.2
Lj1g0026032 Lotus japonicus HOM05D000725 ORTHO05D004053 1.7e-10 70.1 137 34.3
Os07g0692600 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D004053 2.9e-10 69.3 142 29.6
MBI04_g44603_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D004053 6.4e-10 68.2 80 42.5
Aa31LG1G14210 Aethionema arabicum HOM05D000725 ORTHO05D004053 7.1e-09 64.7 118 28.8
Medtr1g081750 Medicago truncatula HOM05D000725 ORTHO05D004053 3.5e-08 62.4 110 32.7
Lj6g0001238 Lotus japonicus HOM05D000725 ORTHO05D004053 1.3e-07 60.5 113 32.7
CDE04G0926 Ceratophyllum demersum HOM05D000725 ORTHO05D004053 2.3e-07 59.7 121 32.2
Lj4g0016792 Lotus japonicus HOM05D000725 ORTHO05D004053 3.0e-07 59.3 129 34.1
Zm00001eb331510 Zea mays HOM05D000725 ORTHO05D004053 3.0e-07 59.3 111 28.8
Lj1g0014164 Lotus japonicus HOM05D000725 ORTHO05D004053 3.3e-06 55.8 113 30.1
TAR636G1138 Trochodendron aralioides HOM05D000725 ORTHO05D004053 3.3e-06 55.8 70 41.4


User provided reference genes

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