Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 6.3e-108 394.0 190 100.0
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.2e-98 363.2 190 94.2
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.5e-80 303.1 228 70.2
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.8e-70 269.6 245 60.0
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 8.6e-65 250.8 241 56.8
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.5e-64 250.0 241 56.4
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.9e-64 249.6 241 56.0
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 7.3e-64 247.7 245 55.5
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 1.2e-63 246.9 242 55.8
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.7e-60 236.5 244 53.7
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.7e-60 236.5 244 53.7
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 3.8e-60 235.3 244 53.7
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.1e-59 233.8 244 53.7
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.4e-59 233.4 241 54.4
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 1.9e-59 233.0 241 53.5
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 3.2e-59 232.3 240 54.2
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 3.2e-59 232.3 244 52.9
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 7.1e-59 231.1 245 51.0
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 9.3e-59 230.7 244 50.8
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 9.3e-59 230.7 245 51.4
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.2e-58 230.3 244 51.2
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 2.7e-58 229.2 244 52.0
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 6.0e-58 228.0 242 52.5
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 6.0e-58 228.0 244 50.4
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 7.8e-58 227.6 241 52.3
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 7.8e-58 227.6 244 49.2
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 1.0e-57 227.3 240 52.1
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 1.0e-57 227.3 271 48.0
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.3e-57 226.9 240 52.1
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 1.3e-57 226.9 244 50.8
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 3.9e-57 225.3 242 51.2
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 3.9e-57 225.3 240 52.5
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.6e-57 224.6 241 49.8
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 6.6e-57 224.6 241 51.9
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 8.7e-57 224.2 244 50.0
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 1.5e-56 223.4 245 49.8
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 1.9e-56 223.0 245 49.8
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 1.9e-56 223.0 239 52.7
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 1.9e-56 223.0 245 49.8
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 3.3e-56 222.2 240 51.7
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 4.3e-56 221.9 243 50.2
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 4.3e-56 221.9 242 52.5
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 7.3e-56 221.1 243 49.8
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.3e-55 220.3 223 53.8
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 2.8e-55 219.2 245 51.0
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 4.8e-55 218.4 242 47.9
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 6.2e-55 218.0 244 51.6
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 5.3e-54 214.9 242 50.4
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 6.9e-54 214.5 240 49.2
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 9.0e-54 214.2 242 50.4
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 1.5e-53 213.4 242 50.4
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.3e-52 210.3 247 50.6
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 2.9e-52 209.1 244 48.4
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 1.9e-51 206.5 240 47.1
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 1.9e-51 206.5 240 47.1
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 1.9e-51 206.5 244 47.5
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 2.4e-51 206.1 241 47.7
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 5.4e-51 204.9 240 47.9
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 5.4e-51 204.9 240 49.2
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 1.2e-50 203.8 240 47.1
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.2e-50 203.8 241 47.7
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 2.1e-50 203.0 240 47.5
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 2.1e-50 203.0 240 47.5
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 4.6e-50 201.8 242 48.8
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 4.6e-50 201.8 240 46.7
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 7.9e-50 201.1 240 47.1
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 1.0e-49 200.7 240 46.2
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 1.3e-49 200.3 240 48.8
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 2.3e-49 199.5 238 45.8
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 2.3e-49 199.5 241 48.1
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 3.0e-49 199.1 240 47.5
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 3.9e-49 198.7 240 46.7
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 5.1e-49 198.4 211 52.1
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 5.1e-49 198.4 211 52.1
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 5.1e-49 198.4 240 46.2
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 8.7e-49 197.6 240 47.9
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 8.7e-49 197.6 239 46.9
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 1.1e-48 197.2 240 47.9
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 1.9e-48 196.4 240 47.1
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 4.3e-48 195.3 240 45.8
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 5.6e-48 194.9 242 47.9
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 9.6e-48 194.1 240 46.7
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 9.6e-48 194.1 240 46.7
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 3.6e-47 192.2 240 46.2
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 8.1e-47 191.0 240 45.0
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 5.8e-45 184.9 222 45.5
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 5.8e-45 184.9 206 47.6
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 5.8e-45 184.9 242 43.4
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 2.4e-43 179.5 206 49.5
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 7.9e-42 174.5 237 39.7
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.0e-41 172.6 183 51.9
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 1.1e-40 170.6 262 41.2
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.6e-39 166.8 235 39.6
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 2.4e-38 162.9 227 44.5
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 6.9e-38 161.4 220 43.6
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 2.0e-37 159.8 216 43.5
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 2.6e-37 159.5 237 36.3
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 2.2e-36 156.4 237 36.7
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 3.8e-36 155.6 240 39.6
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 8.4e-36 154.5 190 45.8
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.2e-34 150.6 214 43.5
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 4.6e-34 148.7 191 44.5
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 1.8e-33 146.7 158 51.3
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 5.1e-33 145.2 158 50.6
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 2.5e-32 142.9 179 47.5
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 4.3e-32 142.1 161 50.9
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 4.8e-31 138.7 188 42.6
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 3.1e-30 136.0 129 55.0
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.2e-29 134.0 176 46.6
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 2.6e-29 132.9 150 47.3
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 1.4e-27 127.1 181 44.2
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 4.2e-27 125.6 169 38.5
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 9.3e-27 124.4 170 42.4
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 4.6e-26 122.1 147 48.3
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 7.9e-26 121.3 146 47.3
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 8.7e-25 117.9 81 67.9
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.5e-21 107.1 146 43.8
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 2.6e-21 106.3 105 50.5
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 1.7e-20 103.6 81 59.3
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 8.5e-20 101.3 76 60.5
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 5.1e-17 92.0 117 46.2
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 2.2e-15 86.7 216 25.9
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 7.7e-13 78.2 123 39.0
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.7e-12 77.0 56 64.3
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.1e-11 74.3 56 67.9
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.1e-10 68.6 68 48.5
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 7.9e-10 68.2 82 50.0


User provided reference genes

Program Settings