Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12708 Nelumbo nucifera HOM05D003245 ORTHO05D004125 3.3e-63 245.0 134 100.0
Duzib192G0054 Durio zibethinus HOM05D003245 ORTHO05D004125 2.4e-61 238.8 133 97.0
Duzib235G0677 Durio zibethinus HOM05D003245 ORTHO05D004125 2.4e-61 238.8 133 97.0
Thecc.06G060900 Theobroma cacao HOM05D003245 ORTHO05D004125 2.4e-61 238.8 133 97.0
Ciclev10009141m.g Citrus clementina HOM05D003245 ORTHO05D004125 4.1e-61 238.0 133 96.2
MELO3C005378.2 Cucumis melo HOM05D003245 ORTHO05D004125 4.1e-61 238.0 133 95.5
Phvul.003G146500 Phaseolus vulgaris HOM05D003245 ORTHO05D004125 4.1e-61 238.0 133 95.5
VMungo1215G1658 Vigna mungo HOM05D003245 ORTHO05D004125 4.1e-61 238.0 133 95.5
CsaV3_5G005750 Cucumis sativus L. HOM05D003245 ORTHO05D004125 5.3e-61 237.7 133 94.7
CANSAT11G2281 Cannabis sativa HOM05D003245 ORTHO05D004125 7.0e-61 237.3 133 95.5
Ca_21218_v3 Cicer arietinum L. HOM05D003245 ORTHO05D004125 9.1e-61 236.9 133 94.7
Atru.chr7.659 Acer truncatum HOM05D003245 ORTHO05D004125 1.2e-60 236.5 133 95.5
Cc06_g13310 Coffea canephora HOM05D003245 ORTHO05D004125 1.2e-60 236.5 133 94.7
PSO541G0246 Papaver somniferum HOM05D003245 ORTHO05D004125 1.2e-60 236.5 133 96.2
PSO675G6578 Papaver somniferum HOM05D003245 ORTHO05D004125 1.2e-60 236.5 133 96.2
PGR102G0922 Punica granatum HOM05D003245 ORTHO05D004125 1.2e-60 236.5 133 94.7
Glyma.13G096100 Glycine max HOM05D003245 ORTHO05D004125 1.6e-60 236.1 133 94.7
Medtr4g128290 Medicago truncatula HOM05D003245 ORTHO05D004125 1.6e-60 236.1 133 94.7
THA.LOC104819980 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 1.6e-60 236.1 133 94.7
arahy.Tifrunner.gnm1.ann1.6TSM6Q Arachis hypogaea HOM05D003245 ORTHO05D004125 2.0e-60 235.7 133 94.0
arahy.Tifrunner.gnm1.ann1.LWG93W Arachis hypogaea HOM05D003245 ORTHO05D004125 2.0e-60 235.7 133 94.0
AUR62040631 Chenopodium quinoa HOM05D003245 ORTHO05D004125 2.0e-60 235.7 133 94.7
Sabra06G0130400 Salix brachista HOM05D003245 ORTHO05D004125 2.0e-60 235.7 133 97.0
GSVIVG01029199001 Vitis vinifera HOM05D003245 ORTHO05D004125 2.0e-60 235.7 133 95.5
Cfa013513 Carpinus fangiana HOM05D003245 ORTHO05D004125 2.6e-60 235.3 133 94.7
Haze_22109 Corylus avellana HOM05D003245 ORTHO05D004125 2.6e-60 235.3 133 94.7
Lj4g0022126 Lotus japonicus HOM05D003245 ORTHO05D004125 2.6e-60 235.3 133 94.7
Actinidia35994 Actinidia chinensis HOM05D003245 ORTHO05D004125 3.5e-60 235.0 133 94.7
Ah.08g212150 Amaranthus hybridus HOM05D003245 ORTHO05D004125 4.5e-60 234.6 133 94.7
BcaC09g51810 Brassica carinata HOM05D003245 ORTHO05D004125 4.5e-60 234.6 133 94.0
A01p07880 Brassica napus HOM05D003245 ORTHO05D004125 4.5e-60 234.6 133 94.0
C01p08790 Brassica napus HOM05D003245 ORTHO05D004125 4.5e-60 234.6 133 94.0
BolC1t00869H Brassica oleracea HOM05D003245 ORTHO05D004125 4.5e-60 234.6 133 94.0
BraA01t00734Z Brassica rapa HOM05D003245 ORTHO05D004125 4.5e-60 234.6 133 94.0
CARHR238170 Cardamine hirsuta HOM05D003245 ORTHO05D004125 4.5e-60 234.6 133 94.0
Cpa.g.sc95.57 Carica papaya HOM05D003245 ORTHO05D004125 4.5e-60 234.6 133 93.2
Thhalv10025913m.g Eutrema salsugineum HOM05D003245 ORTHO05D004125 4.5e-60 234.6 133 94.0
Lj7A472T61 Lonicera japonica HOM05D003245 ORTHO05D004125 4.5e-60 234.6 133 94.0
Sp7g28140 Schrenkiella parvula HOM05D003245 ORTHO05D004125 4.5e-60 234.6 133 94.0
TPR.G5416 Trifolium pratense HOM05D003245 ORTHO05D004125 4.5e-60 234.6 133 94.0
EL10Ac8g19425 Beta vulgaris HOM05D003245 ORTHO05D004125 5.9e-60 234.2 133 94.0
BcaNung03004 Brassica carinata HOM05D003245 ORTHO05D004125 5.9e-60 234.2 133 93.2
Dinv41253 Davidia involucrata HOM05D003245 ORTHO05D004125 7.7e-60 233.8 133 94.0
Dinv42729 Davidia involucrata HOM05D003245 ORTHO05D004125 7.7e-60 233.8 133 94.7
Dinv43372 Davidia involucrata HOM05D003245 ORTHO05D004125 7.7e-60 233.8 133 94.7
Sed0003509 Sechium edule HOM05D003245 ORTHO05D004125 7.7e-60 233.8 133 94.0
Gohir.A05G113700 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.0e-59 233.4 133 96.2
TAR383G0562 Trochodendron aralioides HOM05D003245 ORTHO05D004125 1.0e-59 233.4 133 97.0
MSTRG.6209 Avicennia marina HOM05D003245 ORTHO05D004125 1.7e-59 232.6 133 94.0
Manes.14G150500 Manihot esculenta HOM05D003245 ORTHO05D004125 1.7e-59 232.6 133 93.2
Peaxi162Scf00231g00812 Petunia axillaris HOM05D003245 ORTHO05D004125 2.9e-59 231.9 133 93.2
Gohir.D05G114100 Gossypium hirsutum HOM05D003245 ORTHO05D004125 3.8e-59 231.5 133 95.5
Gorai.009G118100 Gossypium raimondii HOM05D003245 ORTHO05D004125 3.8e-59 231.5 133 95.5
Nitab4.5_0004307g0020 Nicotiana tabacum HOM05D003245 ORTHO05D004125 3.8e-59 231.5 133 92.5
Potri.018G093800 Populus trichocarpa HOM05D003245 ORTHO05D004125 3.8e-59 231.5 133 94.0
THA.LOC104803937 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 3.8e-59 231.5 133 93.2
TWI12G0425 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 3.8e-59 231.5 133 94.0
BraA08t33893Z Brassica rapa HOM05D003245 ORTHO05D004125 5.0e-59 231.1 133 93.2
Os01g0867700 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 5.0e-59 231.1 133 92.5
QL02p097606 Quercus lobata HOM05D003245 ORTHO05D004125 5.0e-59 231.1 132 93.9
AL7G21890 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 6.5e-59 230.7 133 93.2
BcaB03g12640 Brassica carinata HOM05D003245 ORTHO05D004125 6.5e-59 230.7 133 93.2
BcaC01g01161 Brassica carinata HOM05D003245 ORTHO05D004125 6.5e-59 230.7 133 93.2
A08p19320 Brassica napus HOM05D003245 ORTHO05D004125 6.5e-59 230.7 133 93.2
BolC3t21189H Brassica oleracea HOM05D003245 ORTHO05D004125 6.5e-59 230.7 133 93.2
Potri.006G169200 Populus trichocarpa HOM05D003245 ORTHO05D004125 6.5e-59 230.7 133 95.5
Prupe.1G086600 Prunus persica HOM05D003245 ORTHO05D004125 6.5e-59 230.7 133 93.2
Solyc07g018210.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 6.5e-59 230.7 133 93.2
Carub.0007s1035 Capsella rubella HOM05D003245 ORTHO05D004125 8.5e-59 230.3 133 92.5
Hma1.2p1_2478F.1_g322920 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 8.5e-59 230.3 133 92.5
MD13G1256000 Malus domestica HOM05D003245 ORTHO05D004125 8.5e-59 230.3 133 92.5
Solyc07g018220.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 8.5e-59 230.3 133 92.5
Sopen07g007320 Solanum pennellii HOM05D003245 ORTHO05D004125 8.5e-59 230.3 133 92.5
Sopen07g007330 Solanum pennellii HOM05D003245 ORTHO05D004125 8.5e-59 230.3 133 92.5
PGSC0003DMG400002422 Solanum tuberosum HOM05D003245 ORTHO05D004125 8.5e-59 230.3 133 92.5
PGSC0003DMG401002421 Solanum tuberosum HOM05D003245 ORTHO05D004125 8.5e-59 230.3 133 92.5
Zm00001eb146670 Zea mays HOM05D003245 ORTHO05D004125 8.5e-59 230.3 133 91.0
CSS0017554 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 1.1e-58 229.9 133 93.2
CAN.G5.10 Capsicum annuum HOM05D003245 ORTHO05D004125 1.1e-58 229.9 133 91.7
CiPaw.08G036800 Carya illinoinensis HOM05D003245 ORTHO05D004125 1.1e-58 229.9 133 93.2
HanXRQChr09g0254481 Helianthus annuus HOM05D003245 ORTHO05D004125 1.1e-58 229.9 133 91.7
TWI12G0523 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 1.1e-58 229.9 133 93.2
AT2G18840 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 1.5e-58 229.6 133 92.5
Carub.0003s3307 Capsella rubella HOM05D003245 ORTHO05D004125 1.5e-58 229.6 133 92.5
CARHR109400 Cardamine hirsuta HOM05D003245 ORTHO05D004125 1.5e-58 229.6 133 92.5
Lalb_Chr07g0180421 Lupinus albus HOM05D003245 ORTHO05D004125 1.5e-58 229.6 133 93.2
Lalb_Chr12g0199351 Lupinus albus HOM05D003245 ORTHO05D004125 1.9e-58 229.2 133 92.5
Aa31LG8G15930 Aethionema arabicum HOM05D003245 ORTHO05D004125 2.5e-58 228.8 133 91.7
MSTRG.19702 Avicennia marina HOM05D003245 ORTHO05D004125 2.5e-58 228.8 133 91.7
C03p88780 Brassica napus HOM05D003245 ORTHO05D004125 2.5e-58 228.8 133 92.5
ECA236G4509 Erigeron canadensis HOM05D003245 ORTHO05D004125 2.5e-58 228.8 133 91.7
FvH4_4g09840 Fragaria vesca HOM05D003245 ORTHO05D004125 2.5e-58 228.8 133 91.0
FAN07G1981 Fragaria x ananassa HOM05D003245 ORTHO05D004125 2.5e-58 228.8 133 91.0
FAN12G1523 Fragaria x ananassa HOM05D003245 ORTHO05D004125 2.5e-58 228.8 133 91.0
FAN12G3343 Fragaria x ananassa HOM05D003245 ORTHO05D004125 2.5e-58 228.8 133 91.0
FAN22G0867 Fragaria x ananassa HOM05D003245 ORTHO05D004125 2.5e-58 228.8 133 91.0
Lsat_1_v5_gn_8_67041 Lactuca sativa HOM05D003245 ORTHO05D004125 2.5e-58 228.8 133 91.7
RcHm_v2.0_Chr4g0402611 Rosa chinensis HOM05D003245 ORTHO05D004125 2.5e-58 228.8 133 91.0
AL3G53110 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 3.2e-58 228.4 133 91.7
AT4G30260 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 3.2e-58 228.4 133 91.7
ECA240G1971 Erigeron canadensis HOM05D003245 ORTHO05D004125 3.2e-58 228.4 133 91.7
Lsat_1_v5_gn_7_54500 Lactuca sativa HOM05D003245 ORTHO05D004125 3.2e-58 228.4 132 91.7
Sabra18G0080700 Salix brachista HOM05D003245 ORTHO05D004125 4.2e-58 228.0 133 94.7
CAN.G32.5 Capsicum annuum HOM05D003245 ORTHO05D004125 5.5e-58 227.6 133 91.0
Sp3g32300 Schrenkiella parvula HOM05D003245 ORTHO05D004125 5.5e-58 227.6 133 91.7
Os05g0437500 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 7.2e-58 227.3 133 91.7
Hund22399 Selenicereus undatus HOM05D003245 ORTHO05D004125 9.4e-58 226.9 133 91.7
Duzib160G0168 Durio zibethinus HOM05D003245 ORTHO05D004125 1.2e-57 226.5 133 91.7
ATR0580G426 Amborella trichopoda HOM05D003245 ORTHO05D004125 1.6e-57 226.1 133 90.2
HanXRQChr09g0245001 Helianthus annuus HOM05D003245 ORTHO05D004125 1.6e-57 226.1 133 89.5
MD13G1256300 Malus domestica HOM05D003245 ORTHO05D004125 1.6e-57 226.1 133 91.0
vmacro13120 Vaccinium macrocarpon HOM05D003245 ORTHO05D004125 2.1e-57 225.7 133 91.0
CDE02G4007 Ceratophyllum demersum HOM05D003245 ORTHO05D004125 2.7e-57 225.3 133 91.7
CiPaw.07G191800 Carya illinoinensis HOM05D003245 ORTHO05D004125 3.6e-57 224.9 133 91.7
Migut.K00245 Erythranthe guttata HOM05D003245 ORTHO05D004125 3.6e-57 224.9 133 92.5
Gorai.005G122000 Gossypium raimondii HOM05D003245 ORTHO05D004125 6.1e-57 224.2 133 90.2
TAR626G1505 Trochodendron aralioides HOM05D003245 ORTHO05D004125 6.1e-57 224.2 133 91.7
Rhsim01G0005500 Rhododendron simsii HOM05D003245 ORTHO05D004125 8.0e-57 223.8 133 91.0
SGA_v2.0_scaffold66G22455 Striga asiatica HOM05D003245 ORTHO05D004125 8.0e-57 223.8 133 91.0
Gohir.D10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.0e-56 223.4 133 88.7
Gorai.011G003600 Gossypium raimondii HOM05D003245 ORTHO05D004125 1.0e-56 223.4 133 88.7
Aqoxy1G01965 Aquilegia oxysepala HOM05D003245 ORTHO05D004125 1.4e-56 223.0 133 91.0
HanXRQChr12g0365401 Helianthus annuus HOM05D003245 ORTHO05D004125 4.0e-56 221.5 133 86.5
Gohir.A10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 2.6e-55 218.8 133 87.2
Hma1.2p1_1710F.1_g298640 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 5.7e-55 217.6 133 89.5
ClCG01G005520 Citrullus lanatus HOM05D003245 ORTHO05D004125 7.5e-55 217.2 176 72.2
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 9.8e-55 216.9 120 95.8
Glyma.17G064000 Glycine max HOM05D003245 ORTHO05D004125 1.3e-54 216.5 120 95.0
unitig_8.g3424 Utricularia gibba HOM05D003245 ORTHO05D004125 2.8e-54 215.3 131 87.8
MSTRG.26224 Avicennia marina HOM05D003245 ORTHO05D004125 3.1e-53 211.8 133 85.7
Psat4g011760 Pisum sativum HOM05D003245 ORTHO05D004125 7.0e-53 210.7 121 90.9
Zm00001eb289090 Zea mays HOM05D003245 ORTHO05D004125 7.0e-53 210.7 133 84.2
CSS0020996 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 2.0e-52 209.1 143 82.5
SEGI_27058 Sequoiadendron giganteum HOM05D003245 ORTHO05D004125 3.5e-52 208.4 133 80.5
HPP92_001091 Vanilla planifolia HOM05D003245 ORTHO05D004125 3.5e-52 208.4 120 90.8
Lj9C686G6 Lonicera japonica HOM05D003245 ORTHO05D004125 4.2e-50 201.4 188 65.4
Eucgr.C02287 Eucalyptus grandis HOM05D003245 ORTHO05D004125 5.5e-50 201.1 123 89.4
MBI14_g17360_MAGBIO Magnolia biondii HOM05D003245 ORTHO05D004125 3.6e-49 198.4 192 62.5
Dinv23253 Davidia involucrata HOM05D003245 ORTHO05D004125 4.7e-49 198.0 131 81.7
SalBow1G7127 Salvia bowleyana HOM05D003245 ORTHO05D004125 8.0e-49 197.2 133 76.7
MBI16_g35929_MAGBIO Magnolia biondii HOM05D000126 ORTHO05D000085 1.4e-48 196.4 118 87.3
GSVIVG01016111001 Vitis vinifera HOM05D003245 ORTHO05D004125 2.0e-47 192.6 130 77.7
HPP92_003207 Vanilla planifolia HOM05D003245 ORTHO05D004125 6.3e-46 187.6 120 83.3
AUR62034052 Chenopodium quinoa HOM05D003245 ORTHO05D004125 3.1e-45 185.3 133 76.7
DCAR_014704 Daucus carota HOM05D006247 ORTHO05D007684 9.1e-45 183.7 141 73.8
Manes.06G024000 Manihot esculenta HOM05D003245 ORTHO05D004125 1.2e-44 183.3 133 75.9
Nitab4.5_0007820g0010 Nicotiana tabacum HOM05D003245 ORTHO05D004125 4.5e-44 181.4 136 75.7
SalBow6G1711 Salvia bowleyana HOM05D003245 ORTHO05D004125 1.7e-43 179.5 133 75.9
Mapoly0113s0010 Marchantia polymorpha HOM05D003245 ORTHO05D004125 2.9e-43 178.7 133 71.4
A03p59700 Brassica napus HOM05D003245 ORTHO05D004125 6.6e-43 177.6 113 87.6
Oeu056516.1 Olea europaea HOM05D002774 ORTHO05D000116 1.1e-42 176.8 102 93.1
CBR_g23822 Chara braunii HOM05D003245 ORTHO05D004125 4.2e-42 174.9 133 70.7
SGA_v2.0_scaffold17G07907 Striga asiatica HOM05D003245 ORTHO05D004125 5.6e-42 174.5 102 90.2
Actinidia04152 Actinidia chinensis HOM05D003245 ORTHO05D004125 7.2e-42 174.1 98 92.9
SMO146G0102 Selaginella moellendorffii HOM05D003245 ORTHO05D004125 3.6e-41 171.8 130 66.9
Pp3c11_7990 Physcomitrium patens HOM05D003245 ORTHO05D004125 1.4e-40 169.9 133 66.9
Pp3c7_23160 Physcomitrium patens HOM05D003245 ORTHO05D004125 2.3e-40 169.1 130 67.7
Pp3c7_23220 Physcomitrium patens HOM05D003245 ORTHO05D004125 2.3e-40 169.1 130 67.7
Gohir.D02G107400 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.2e-39 166.8 105 83.8
SalBow6G0700 Salvia bowleyana HOM05D003245 ORTHO05D004125 1.2e-36 156.8 120 72.5
SMO364G0848 Selaginella moellendorffii HOM05D003245 ORTHO05D004125 3.3e-34 148.7 130 59.2
BraA03t15022Z Brassica rapa HOM05D003245 ORTHO05D004125 2.9e-30 135.6 131 64.1
BcaNung00534 Brassica carinata HOM05D003245 ORTHO05D004125 7.8e-28 127.5 94 75.5
RcHm_v2.0_Chr4g0439321 Rosa chinensis HOM05D003245 ORTHO05D004125 8.6e-27 124.0 75 81.3
Sopen07g007360 Solanum pennellii HOM05D003245 ORTHO05D004125 1.1e-26 123.6 76 86.8
unitig_22.g6851 Utricularia gibba HOM05D003245 ORTHO05D004125 4.4e-23 111.7 65 93.8
C07p57720 Brassica napus HOM05D003245 ORTHO05D004125 2.9e-22 109.0 117 60.7
FAN17G0462 Fragaria x ananassa HOM05D003245 ORTHO05D004125 1.1e-21 107.1 60 88.3
Gohir.A02G090301 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.4e-21 106.7 64 84.4
Cre07.g326400 Chlamydomonas reinhardtii HOM05D003245 ORTHO05D004125 1.9e-21 106.3 127 49.6
PRCOL_00000817 Prasinoderma coloniale HOM05D003245 ORTHO05D004125 3.5e-20 102.1 108 48.1
MCO01G262 Micromonas commoda HOM05D003245 ORTHO05D004125 2.9e-14 82.4 127 40.2
BolC7t46233H Brassica oleracea HOM05D003245 ORTHO05D004125 4.1e-13 78.6 60 68.3
Sed0004345 Sechium edule HOM05D003245 ORTHO05D004125 5.4e-13 78.2 52 86.5
Zm00001eb366670 Zea mays HOM05D003245 ORTHO05D004125 1.2e-12 77.0 46 95.7
Sc18g0007470 Simmondsia chinensis HOM05D003245 ORTHO05D004125 2.7e-12 75.9 46 93.5
SGA_v2.0_scaffold12G06064 Striga asiatica HOM05D003245 ORTHO05D004125 7.8e-12 74.3 46 91.3
Migut.J01473 Erythranthe guttata HOM05D003245 ORTHO05D004125 1.5e-10 70.1 40 97.5
BolC9t56073H Brassica oleracea HOM05D003245 ORTHO05D004125 1.6e-09 66.6 45 86.7
CDE04G1421 Ceratophyllum demersum HOM05D000126 ORTHO05D000085 3.1e-08 62.4 35 94.3
BcaC02g09549 Brassica carinata HOM05D003245 ORTHO05D004125 4.0e-08 62.0 46 78.3
BcaC05g28230 Brassica carinata HOM05D003245 ORTHO05D004125 1.5e-07 60.1 39 87.2


User provided reference genes

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