Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 3.0e-215 751.5 363 100.0
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 4.7e-152 541.6 364 74.2
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 5.7e-150 534.6 362 73.5
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 7.5e-150 534.3 361 73.4
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 1.3e-149 533.5 362 73.5
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 1.5e-145 520.0 362 71.3
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 8.9e-143 510.8 366 68.6
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 1.2e-142 510.4 356 71.1
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 2.6e-142 509.2 358 70.4
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 3.4e-142 508.8 360 69.2
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 4.4e-142 508.4 357 70.6
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 9.8e-142 507.3 367 68.4
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 3.7e-141 505.4 356 70.8
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 6.3e-141 504.6 360 70.3
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 2.4e-140 502.7 364 70.9
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 5.4e-140 501.5 357 70.3
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 5.4e-140 501.5 356 70.5
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 7.0e-140 501.1 357 71.1
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 1.6e-139 500.0 362 68.5
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 5.9e-139 498.0 357 68.6
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 1.0e-138 497.3 362 69.1
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 1.3e-138 496.9 355 70.7
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 1.7e-138 496.5 358 68.4
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 5.0e-138 495.0 357 70.6
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 6.6e-138 494.6 354 68.6
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 1.1e-137 493.8 355 69.3
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 7.3e-137 491.1 363 68.0
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 2.1e-136 489.6 363 66.9
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 4.7e-136 488.4 353 68.6
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 4.7e-136 488.4 353 68.6
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 4.7e-136 488.4 356 67.4
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 4.7e-136 488.4 361 68.4
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 1.4e-135 486.9 356 68.0
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 3.0e-135 485.7 355 68.7
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 4.0e-135 485.3 355 68.7
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 6.8e-135 484.6 359 68.2
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 8.9e-135 484.2 355 67.0
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 1.5e-134 483.4 364 67.6
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 1.5e-134 483.4 356 67.4
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 1.5e-134 483.4 355 67.3
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 2.6e-134 482.6 362 66.6
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 4.4e-134 481.9 355 68.2
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 7.5e-134 481.1 361 66.5
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 2.9e-133 479.2 360 68.6
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 2.9e-133 479.2 360 67.5
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 6.4e-133 478.0 357 66.7
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 6.4e-133 478.0 360 68.3
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 1.1e-132 477.2 355 65.6
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 6.0e-131 471.5 364 66.5
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 2.3e-130 469.5 361 65.7
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 6.6e-130 468.0 359 66.3
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 2.5e-129 466.1 364 65.7
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 5.6e-129 464.9 359 66.0
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 9.5e-129 464.2 354 66.9
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 4.7e-128 461.8 361 66.2
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 6.2e-128 461.5 372 64.5
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 8.0e-128 461.1 355 64.8
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 8.0e-128 461.1 360 65.8
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 6.8e-127 458.0 346 66.5
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 1.2e-126 457.2 368 63.3
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 2.2e-125 453.0 368 63.0
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 4.1e-124 448.7 391 60.4
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 9.2e-124 447.6 346 64.7
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 1.0e-122 444.1 360 62.5
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 2.3e-122 443.0 311 71.7
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 5.0e-122 441.8 367 62.1
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 1.2e-120 437.2 361 63.2
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 1.2e-120 437.2 356 62.1
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 2.8e-120 436.0 335 64.8
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 3.1e-119 432.6 355 61.4
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 2.9e-117 426.0 312 70.2
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 4.9e-117 425.2 299 70.9
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 1.1e-116 424.1 362 60.8
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 7.1e-116 421.4 321 65.4
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 6.0e-115 418.3 353 61.2
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 4.3e-113 412.1 359 60.2
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 4.4e-110 402.1 340 62.1
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 2.2e-109 399.8 316 63.6
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 8.4e-101 371.3 430 47.7
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 5.1e-98 362.1 291 65.3
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 7.3e-97 358.2 416 47.6
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 2.1e-96 356.7 294 61.9
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 2.7e-91 339.7 359 50.4
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 5.1e-90 335.5 364 52.2
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 6.7e-90 335.1 322 55.0
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 3.7e-88 329.3 366 53.0
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 4.8e-88 328.9 264 64.8
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 6.4e-85 318.5 295 57.6
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 4.8e-80 302.4 265 60.4
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 7.1e-76 288.5 243 61.7
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 7.9e-75 285.0 526 36.3
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.0e-74 284.6 368 47.0
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 4.3e-73 279.3 261 57.9
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 6.9e-71 271.9 275 53.8
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 2.1e-67 260.4 261 54.4
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 1.1e-63 248.1 404 37.6
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 2.4e-63 246.9 214 59.3
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 2.6e-62 243.4 376 41.8
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 3.8e-61 239.6 273 49.5
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.2e-59 234.6 322 45.7
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 7.9e-59 231.9 255 52.2
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 2.0e-57 227.3 147 72.8
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 9.7e-57 224.9 143 75.5
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 7.7e-54 215.3 134 75.4
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 2.4e-47 193.7 241 51.0
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 2.2e-45 187.2 206 52.4
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 6.1e-43 179.1 111 75.7
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 2.0e-38 164.1 124 65.3
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 6.5e-37 159.1 374 31.3
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 4.1e-31 139.8 141 48.9
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 5.0e-29 132.9 302 33.4
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 1.6e-27 127.9 141 47.5
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.6e-27 127.9 80 73.8
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 3.6e-27 126.7 84 72.6
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.0e-26 125.2 80 73.8
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 2.8e-24 117.1 67 83.6
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 1.3e-21 108.2 66 72.7
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.4e-18 98.2 73 67.1
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 5.2e-18 96.3 64 67.2
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 5.6e-12 76.3 122 37.7
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.2e-09 68.6 45 66.7
Ah.12g063940 Amaranthus hybridus HOM05D005914 ORTHO05D007361 3.7e-08 63.5 67 46.3
MD08G1143600 Malus domestica HOM05D005914 ORTHO05D007361 8.3e-08 62.4 63 49.2
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 1.4e-07 61.6 55 61.8
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 5.4e-07 59.7 33 75.8
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 2.1e-06 57.8 28 85.7
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 6.0e-06 56.2 31 77.4


User provided reference genes

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