Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11812 Nelumbo nucifera HOM05D000528 ORTHO05D000999 3.3e-56 221.5 110 100.0
Nn1g01203 Nelumbo nucifera HOM05D000528 ORTHO05D000999 1.4e-51 206.1 108 94.4
Eucgr.E01413 Eucalyptus grandis HOM05D000528 ORTHO05D000999 3.8e-49 198.0 108 90.7
ClCG05G002160 Citrullus lanatus HOM05D000528 ORTHO05D000999 4.3e-48 194.5 108 88.0
PGR042G1274 Punica granatum HOM05D000528 ORTHO05D000999 7.3e-48 193.7 108 88.0
MELO3C006181.2 Cucumis melo HOM05D000528 ORTHO05D000999 1.6e-47 192.6 108 87.0
CsaV3_3G009610 Cucumis sativus L. HOM05D000528 ORTHO05D000999 1.6e-47 192.6 108 87.0
Nn4g26427 Nelumbo nucifera HOM05D000528 ORTHO05D000999 3.6e-47 191.4 108 88.9
Aqoxy7G00597 Aquilegia oxysepala HOM05D000528 ORTHO05D000999 8.0e-47 190.3 108 86.1
COL.COLO4_12559 Corchorus olitorius HOM05D000528 ORTHO05D000999 8.0e-47 190.3 108 87.0
Atru.chr5.321 Acer truncatum HOM05D000528 ORTHO05D000999 1.0e-46 189.9 108 87.0
Gohir.A11G081300 Gossypium hirsutum HOM05D000528 ORTHO05D000999 1.4e-46 189.5 108 87.0
Gohir.D11G085900 Gossypium hirsutum HOM05D000528 ORTHO05D000999 1.4e-46 189.5 108 87.0
Gorai.007G091700 Gossypium raimondii HOM05D000528 ORTHO05D000999 1.4e-46 189.5 108 87.0
Gorai.004G041200 Gossypium raimondii HOM05D000528 ORTHO05D000999 2.3e-46 188.7 108 86.1
Duzib138G0174 Durio zibethinus HOM05D000528 ORTHO05D000999 4.0e-46 188.0 108 87.0
TAR636G0580 Trochodendron aralioides HOM05D000528 ORTHO05D000999 4.0e-46 188.0 108 86.1
Thecc.01G375000 Theobroma cacao HOM05D000528 ORTHO05D000999 5.2e-46 187.6 108 86.1
TAR629G3338 Trochodendron aralioides HOM05D000528 ORTHO05D000999 5.2e-46 187.6 108 87.0
Gohir.A08G031500 Gossypium hirsutum HOM05D000528 ORTHO05D000999 8.9e-46 186.8 108 85.2
Lalb_Chr12g0208321 Lupinus albus HOM05D000528 ORTHO05D000999 1.2e-45 186.4 109 86.2
Duzib133G0584 Durio zibethinus HOM05D000528 ORTHO05D000999 1.5e-45 186.0 108 84.3
Gohir.D08G042600 Gossypium hirsutum HOM05D000528 ORTHO05D000999 1.5e-45 186.0 108 85.2
CiPaw.01G261100 Carya illinoinensis HOM05D000528 ORTHO05D000999 2.0e-45 185.7 108 85.2
Manes.01G265100 Manihot esculenta HOM05D000528 ORTHO05D000999 3.4e-45 184.9 108 85.2
TWI59G0018 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 3.4e-45 184.9 108 84.3
Gohir.A08G133701 Gossypium hirsutum HOM05D000528 ORTHO05D000999 4.4e-45 184.5 108 84.3
Gohir.D08G154800 Gossypium hirsutum HOM05D000528 ORTHO05D000999 4.4e-45 184.5 108 84.3
Gorai.004G160900 Gossypium raimondii HOM05D000528 ORTHO05D000999 4.4e-45 184.5 108 84.3
Manes.05G044300 Manihot esculenta HOM05D000528 ORTHO05D000999 4.4e-45 184.5 108 85.2
Sed0014114 Sechium edule HOM05D000528 ORTHO05D000999 4.4e-45 184.5 108 84.3
Glyma.18G221200 Glycine max HOM05D000528 ORTHO05D000999 9.8e-45 183.3 110 86.4
CANSAT56G0585 Cannabis sativa HOM05D000528 ORTHO05D000999 1.3e-44 183.0 108 85.2
PSO478G0292 Papaver somniferum HOM05D000528 ORTHO05D000999 1.7e-44 182.6 109 85.3
PSO782G2518 Papaver somniferum HOM05D000528 ORTHO05D000999 1.7e-44 182.6 109 85.3
Phvul.010G085000 Phaseolus vulgaris HOM05D000528 ORTHO05D000999 2.2e-44 182.2 110 86.4
QL08p052116 Quercus lobata HOM05D000528 ORTHO05D000999 2.2e-44 182.2 108 83.3
Haze_16826 Corylus avellana HOM05D000528 ORTHO05D000999 3.7e-44 181.4 109 84.4
Glyma.03G022900 Glycine max HOM05D000528 ORTHO05D000999 6.4e-44 180.6 110 85.5
TWI23G0774 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 8.3e-44 180.3 108 82.4
MD02G1202200 Malus domestica HOM05D000528 ORTHO05D000999 1.4e-43 179.5 108 81.5
Prupe.2G146800 Prunus persica HOM05D000528 ORTHO05D000999 1.4e-43 179.5 108 81.5
THA.LOC104817251 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 2.4e-43 178.7 108 79.6
Lalb_Chr07g0189711 Lupinus albus HOM05D000528 ORTHO05D000999 3.2e-43 178.3 109 82.6
MBI04_g32242_MAGBIO Magnolia biondii HOM05D000528 ORTHO05D000999 3.2e-43 178.3 108 81.5
Psat4g195280 Pisum sativum HOM05D000528 ORTHO05D000999 3.2e-43 178.3 110 82.7
ATR0810G017 Amborella trichopoda HOM05D000528 ORTHO05D000999 7.0e-43 177.2 108 81.5
TPR.G21736 Trifolium pratense HOM05D000528 ORTHO05D000999 7.0e-43 177.2 110 84.5
CiPaw.02G166800 Carya illinoinensis HOM05D000528 ORTHO05D000999 1.2e-42 176.4 108 79.6
Ca_23846_v3 Cicer arietinum L. HOM05D000528 ORTHO05D000999 1.2e-42 176.4 110 83.6
Lj3g0007955 Lotus japonicus HOM05D000528 ORTHO05D000999 1.2e-42 176.4 110 83.6
RcHm_v2.0_Chr1g0350731 Rosa chinensis HOM05D000528 ORTHO05D000999 1.2e-42 176.4 108 81.5
VMungo0331G0143 Vigna mungo HOM05D000528 ORTHO05D000999 1.6e-42 176.0 110 82.7
Actinidia12265 Actinidia chinensis HOM05D000528 ORTHO05D000999 2.0e-42 175.6 109 81.7
Sabra02G0117900 Salix brachista HOM05D000528 ORTHO05D000999 2.7e-42 175.3 111 82.9
SHI13520 Sapria himalayana HOM05D000528 ORTHO05D000999 3.5e-42 174.9 108 80.6
Potri.014G070600 Populus trichocarpa HOM05D000528 ORTHO05D000999 4.6e-42 174.5 111 81.1
Dinv32382 Davidia involucrata HOM05D000528 ORTHO05D000999 6.0e-42 174.1 111 81.1
FvH4_7g12020 Fragaria vesca HOM05D000528 ORTHO05D000999 6.0e-42 174.1 108 81.5
FAN06G3409 Fragaria x ananassa HOM05D000528 ORTHO05D000999 6.0e-42 174.1 108 81.5
FAN06G3597 Fragaria x ananassa HOM05D000528 ORTHO05D000999 6.0e-42 174.1 108 81.5
FAN10G0017 Fragaria x ananassa HOM05D000528 ORTHO05D000999 6.0e-42 174.1 108 81.5
FAN10G3426 Fragaria x ananassa HOM05D000528 ORTHO05D000999 6.0e-42 174.1 108 81.5
Potri.002G149200 Populus trichocarpa HOM05D000528 ORTHO05D000999 6.0e-42 174.1 111 82.0
FAN01G0475 Fragaria x ananassa HOM05D000528 ORTHO05D000999 7.8e-42 173.7 108 80.6
FAN03G2295 Fragaria x ananassa HOM05D000528 ORTHO05D000999 7.8e-42 173.7 108 80.6
MD07G1123200 Malus domestica HOM05D000528 ORTHO05D000999 7.8e-42 173.7 108 81.5
Hma1.2p1_0719F.1_g208520 Hydrangea macrophylla HOM05D000528 ORTHO05D000999 1.0e-41 173.3 109 80.7
Medtr8g036080 Medicago truncatula HOM05D000528 ORTHO05D000999 1.0e-41 173.3 110 80.9
CDE02G2972 Ceratophyllum demersum HOM05D000528 ORTHO05D000999 3.0e-41 171.8 108 79.6
CDE04G0269 Ceratophyllum demersum HOM05D000528 ORTHO05D000999 5.0e-41 171.0 108 79.6
CAN.G388.2 Capsicum annuum HOM05D000528 ORTHO05D000999 8.6e-41 170.2 112 78.6
Nitab4.5_0000457g0380 Nicotiana tabacum HOM05D000528 ORTHO05D000999 8.6e-41 170.2 112 78.6
Nitab4.5_0002993g0060 Nicotiana tabacum HOM05D000528 ORTHO05D000999 8.6e-41 170.2 112 78.6
PGSC0003DMG400012771 Solanum tuberosum HOM05D000528 ORTHO05D000999 8.6e-41 170.2 112 78.6
Ca_07825_v3 Cicer arietinum L. HOM05D000528 ORTHO05D000999 1.1e-40 169.9 110 80.9
Solyc01g091460.3 Solanum lycopersicum HOM05D000528 ORTHO05D000999 1.5e-40 169.5 112 78.6
Sopen01g037200 Solanum pennellii HOM05D000528 ORTHO05D000999 1.5e-40 169.5 112 78.6
unitig_22.g5379 Utricularia gibba HOM05D000528 ORTHO05D000999 1.9e-40 169.1 113 79.6
Cc02_g36590 Coffea canephora HOM05D000528 ORTHO05D000999 2.5e-40 168.7 112 78.6
Carub.0008s0950 Capsella rubella HOM05D000528 ORTHO05D000999 3.3e-40 168.3 108 78.7
Peaxi162Scf00021g01518 Petunia axillaris HOM05D000528 ORTHO05D000999 3.3e-40 168.3 112 77.7
arahy.Tifrunner.gnm1.ann1.RG5BSU Arachis hypogaea HOM05D000528 ORTHO05D000999 4.3e-40 167.9 113 77.9
arahy.Tifrunner.gnm1.ann1.V729I7 Arachis hypogaea HOM05D000528 ORTHO05D000999 4.3e-40 167.9 113 77.9
Sp5g02390 Schrenkiella parvula HOM05D000528 ORTHO05D000999 5.6e-40 167.5 108 78.7
AL5G43180 Arabidopsis lyrata HOM05D000528 ORTHO05D000999 7.3e-40 167.2 111 75.7
AT3G60860 Arabidopsis thaliana HOM05D000528 ORTHO05D000999 7.3e-40 167.2 111 76.6
Dinv43721 Davidia involucrata HOM05D000528 ORTHO05D000999 7.3e-40 167.2 111 78.4
Phvul.008G075600 Phaseolus vulgaris HOM05D000528 ORTHO05D000999 9.5e-40 166.8 111 79.3
Aa31LG10G15090 Aethionema arabicum HOM05D000528 ORTHO05D000999 1.2e-39 166.4 109 78.9
Ciclev10018463m.g Citrus clementina HOM05D000528 ORTHO05D000999 1.2e-39 166.4 108 77.8
Medtr7g075030 Medicago truncatula HOM05D000528 ORTHO05D000999 1.2e-39 166.4 110 79.1
Psat3g115480 Pisum sativum HOM05D000528 ORTHO05D000999 1.2e-39 166.4 110 80.0
MSTRG.20755 Avicennia marina HOM05D000528 ORTHO05D000999 1.6e-39 166.0 112 78.6
Migut.B01644 Erythranthe guttata HOM05D000528 ORTHO05D000999 1.6e-39 166.0 113 78.8
Oeu037910.1 Olea europaea HOM05D000528 ORTHO05D000999 1.6e-39 166.0 113 76.1
SalBow5G0378 Salvia bowleyana HOM05D000528 ORTHO05D000999 1.6e-39 166.0 113 78.8
SalBow5G4354 Salvia bowleyana HOM05D000528 ORTHO05D000999 1.6e-39 166.0 113 78.8
DCAR_006872 Daucus carota HOM05D000528 ORTHO05D000999 2.1e-39 165.6 110 75.5
THA.LOC104814085 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 2.1e-39 165.6 108 78.7
Lj1g0015849 Lotus japonicus HOM05D000528 ORTHO05D000999 6.2e-39 164.1 111 81.1
CARHR171250 Cardamine hirsuta HOM05D000528 ORTHO05D000999 8.0e-39 163.7 108 75.9
CSS0048094 Camellia sinensis var. sinensis HOM05D000528 ORTHO05D000999 1.1e-38 163.3 103 80.6
CARHR000390 Cardamine hirsuta HOM05D000528 ORTHO05D000999 1.1e-38 163.3 108 78.7
BraA09t42272Z Brassica rapa HOM05D000528 ORTHO05D000999 1.4e-38 162.9 109 77.1
Thhalv10005735m.g Eutrema salsugineum HOM05D000528 ORTHO05D000999 1.4e-38 162.9 108 75.9
Lalb_Chr19g0127291 Lupinus albus HOM05D000528 ORTHO05D000999 1.8e-38 162.5 107 77.6
Sp1g00340 Schrenkiella parvula HOM05D000528 ORTHO05D000999 1.8e-38 162.5 108 77.8
VMungo1383G1426 Vigna mungo HOM05D000528 ORTHO05D000999 1.8e-38 162.5 110 78.2
arahy.Tifrunner.gnm1.ann1.W1RKBH Arachis hypogaea HOM05D000528 ORTHO05D000999 4.0e-38 161.4 111 78.4
BcaC07g42347 Brassica carinata HOM05D000528 ORTHO05D000999 4.0e-38 161.4 109 76.1
C08p53970 Brassica napus HOM05D000528 ORTHO05D000999 4.0e-38 161.4 109 76.1
BolC8t52910H Brassica oleracea HOM05D000528 ORTHO05D000999 4.0e-38 161.4 109 76.1
A04p01370 Brassica napus HOM05D000528 ORTHO05D000999 5.2e-38 161.0 108 75.9
BraA04t15857Z Brassica rapa HOM05D000528 ORTHO05D000999 5.2e-38 161.0 108 75.9
Aa31LG1G11290 Aethionema arabicum HOM05D000528 ORTHO05D000999 8.9e-38 160.2 108 76.9
AL1G10360 Arabidopsis lyrata HOM05D000528 ORTHO05D000999 8.9e-38 160.2 108 76.9
AT1G01960 Arabidopsis thaliana HOM05D000528 ORTHO05D000999 8.9e-38 160.2 108 76.9
MSTRG.17200 Avicennia marina HOM05D000528 ORTHO05D000999 8.9e-38 160.2 112 73.2
Cpa.g.sc18.121 Carica papaya HOM05D000528 ORTHO05D000999 8.9e-38 160.2 90 85.6
Carub.0001s0028 Capsella rubella HOM05D000528 ORTHO05D000999 1.2e-37 159.8 108 76.9
Thhalv10006576m.g Eutrema salsugineum HOM05D000528 ORTHO05D000999 1.2e-37 159.8 108 76.9
SGA_v2.0_scaffold153G37022 Striga asiatica HOM05D000528 ORTHO05D000999 1.5e-37 159.5 113 74.3
Glyma.09G268400 Glycine max HOM05D000528 ORTHO05D000999 2.6e-37 158.7 110 75.5
Hund17011 Selenicereus undatus HOM05D000528 ORTHO05D000999 4.4e-37 157.9 114 75.4
Lalb_Chr03g0039411 Lupinus albus HOM05D000528 ORTHO05D000999 1.7e-36 156.0 108 75.0
BcaC02g10193 Brassica carinata HOM05D000528 ORTHO05D000999 2.2e-36 155.6 108 74.1
C04p31720 Brassica napus HOM05D000528 ORTHO05D000999 2.2e-36 155.6 108 74.1
BolC4t24721H Brassica oleracea HOM05D000528 ORTHO05D000999 2.2e-36 155.6 108 74.1
vmacro13391 Vaccinium macrocarpon HOM05D000528 ORTHO05D000999 2.2e-36 155.6 109 73.4
Rhsim07G0026500 Rhododendron simsii HOM05D000528 ORTHO05D000999 2.9e-36 155.2 111 74.8
HanXRQChr04g0122311 Helianthus annuus HOM05D000528 ORTHO05D000999 1.4e-35 152.9 113 74.3
ECA236G3024 Erigeron canadensis HOM05D000528 ORTHO05D000999 2.4e-35 152.1 112 70.5
ECA234G1681 Erigeron canadensis HOM05D000528 ORTHO05D000999 3.2e-35 151.8 112 72.3
Hund27352 Selenicereus undatus HOM05D000528 ORTHO05D000999 9.2e-35 150.2 114 71.9
Lsat_1_v5_gn_7_7460 Lactuca sativa HOM05D000528 ORTHO05D000999 2.7e-34 148.7 111 70.3
Mapoly0030s0155 Marchantia polymorpha HOM05D000528 ORTHO05D000999 3.5e-34 148.3 107 68.2
Lj7C527G9 Lonicera japonica HOM05D000528 ORTHO05D000999 4.6e-34 147.9 96 78.1
HanXRQChr13g0425191 Helianthus annuus HOM05D000528 ORTHO05D000999 6.0e-34 147.5 114 69.3
Sc02g0002530 Simmondsia chinensis HOM05D000528 ORTHO05D000999 7.8e-34 147.1 119 68.9
CSS0038336 Camellia sinensis var. sinensis HOM05D000528 ORTHO05D000999 1.3e-33 146.4 108 70.4
Lj9C571G3 Lonicera japonica HOM05D000528 ORTHO05D000999 1.7e-33 146.0 110 70.9
Lsat_1_v5_gn_4_38961 Lactuca sativa HOM05D000528 ORTHO05D000999 3.0e-33 145.2 111 69.4
AUR62013623 Chenopodium quinoa HOM05D000528 ORTHO05D000999 5.0e-33 144.4 117 68.4
Lsat_1_v5_gn_3_132520 Lactuca sativa HOM05D000528 ORTHO05D000999 5.0e-33 144.4 114 67.5
EL10Ac1g00906 Beta vulgaris HOM05D000528 ORTHO05D000999 6.6e-33 144.1 117 68.4
AUR62004225 Chenopodium quinoa HOM05D000528 ORTHO05D000999 1.9e-32 142.5 117 67.5
HanXRQChr16g0521611 Helianthus annuus HOM05D000528 ORTHO05D000999 9.5e-32 140.2 114 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2536 Anthoceros agrestis HOM05D000528 ORTHO05D000999 2.3e-30 135.6 110 60.9
HPP92_020666 Vanilla planifolia HOM05D000528 ORTHO05D000999 8.9e-30 133.7 110 66.4
SMO144G0125 Selaginella moellendorffii HOM05D000528 ORTHO05D000999 3.4e-29 131.7 109 60.6
HPP92_001571 Vanilla planifolia HOM05D000528 ORTHO05D000999 5.8e-29 131.0 109 64.2
Pp3c11_12270 Physcomitrium patens HOM05D000528 ORTHO05D000999 9.2e-27 123.6 112 58.0
Pp3c7_14180 Physcomitrium patens HOM05D000528 ORTHO05D000999 9.2e-27 123.6 109 57.8
Zm00001eb010810 Zea mays HOM05D000528 ORTHO05D000999 6.0e-26 120.9 116 61.2
Os03g0246800 Oryza sativa ssp. japonica HOM05D000528 ORTHO05D000999 1.5e-24 116.3 117 56.4
CBR_g8287 Chara braunii HOM05D000528 ORTHO05D000999 5.6e-24 114.4 108 54.6
ECA240G2217 Erigeron canadensis HOM05D000528 ORTHO05D000999 4.0e-22 108.2 111 57.7
HPP92_001579 Vanilla planifolia HOM05D000528 ORTHO05D000999 6.4e-20 100.9 73 67.1
CAN.G79.1 Capsicum annuum HOM05D000528 ORTHO05D000999 1.2e-18 96.7 73 69.9
SHI09191 Sapria himalayana HOM05D000528 ORTHO05D030544 1.0e-17 93.6 109 49.5
CAN.G243.14 Capsicum annuum HOM05D000528 ORTHO05D000999 1.7e-17 92.8 79 65.8
SEGI_22051 Sequoiadendron giganteum HOM05D000528 ORTHO05D000999 5.6e-16 87.8 111 48.6
TPR.G26932 Trifolium pratense HOM05D000528 ORTHO05D000999 2.2e-12 75.9 49 77.6
SMO197G0082 Selaginella moellendorffii HOM05D000528 ORTHO05D000999 2.4e-11 72.4 96 44.8
CAN.G488.20 Capsicum annuum HOM05D000528 ORTHO05D000999 3.0e-09 65.5 43 74.4


User provided reference genes

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