Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 1.5e-295 1018.8 532 100.0
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 2.3e-155 553.1 539 60.1
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 1.9e-154 550.1 536 60.4
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 1.9e-149 533.5 524 56.5
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 1.3e-147 527.3 556 57.9
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 8.7e-147 524.6 526 58.9
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 1.6e-145 520.4 540 56.3
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 2.8e-145 519.6 525 57.0
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 3.6e-145 519.2 535 57.6
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 4.0e-144 515.8 538 56.5
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 1.3e-142 510.8 523 56.2
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 1.1e-141 507.7 525 56.6
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 1.1e-141 507.7 538 55.2
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 5.5e-141 505.4 544 55.9
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 1.6e-140 503.8 509 57.2
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.0e-139 501.1 535 57.6
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 1.0e-139 501.1 537 55.9
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 3.9e-139 499.2 540 55.4
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 1.9e-138 496.9 526 54.6
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 1.4e-136 490.7 514 56.2
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 3.1e-136 489.6 483 59.2
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 4.0e-136 489.2 540 53.7
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 6.9e-136 488.4 524 56.3
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 9.0e-136 488.0 534 54.9
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 4.5e-135 485.7 554 51.8
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 8.4e-134 481.5 538 53.5
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 8.4e-134 481.5 538 53.5
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 2.7e-132 476.5 540 53.1
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 6.0e-132 475.3 530 55.1
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 7.9e-132 474.9 546 52.9
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 3.0e-131 473.0 522 54.8
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 5.1e-131 472.2 526 54.2
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.1e-130 471.1 536 54.1
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 7.4e-130 468.4 529 54.1
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 4.1e-128 462.6 566 50.7
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 2.0e-127 460.3 545 51.4
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 2.9e-126 456.4 526 53.8
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 3.8e-126 456.1 405 63.0
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.1e-125 454.5 488 54.5
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.2e-124 451.1 539 51.0
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.6e-124 450.7 420 61.4
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 3.5e-124 449.5 542 50.9
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 4.6e-124 449.1 554 51.3
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 1.3e-123 447.6 333 73.0
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.8e-123 447.2 479 55.9
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 1.8e-123 447.2 525 53.7
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 5.1e-123 445.7 531 49.7
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 5.1e-123 445.7 473 55.2
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 1.9e-122 443.7 478 55.9
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 2.5e-122 443.4 527 53.7
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 9.7e-122 441.4 366 63.1
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 1.6e-121 440.7 549 48.1
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 1.6e-121 440.7 485 52.8
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 4.8e-121 439.1 570 49.6
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 6.3e-121 438.7 537 49.3
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.0e-119 433.7 353 65.4
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 7.7e-119 431.8 527 50.3
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.9e-117 427.2 518 50.6
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 5.5e-117 425.6 519 48.4
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 2.1e-116 423.7 586 46.8
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 2.7e-116 423.3 434 56.5
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 3.6e-116 422.9 482 52.5
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 1.8e-115 420.6 409 56.5
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 8.8e-115 418.3 527 49.5
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 4.3e-114 416.0 474 51.5
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 5.7e-114 415.6 523 48.2
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.3e-113 414.5 361 60.9
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.7e-113 414.1 529 48.2
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 2.8e-113 413.3 531 47.3
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 2.6e-111 406.8 512 49.0
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 1.4e-109 401.0 540 47.4
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.1e-108 397.1 359 59.9
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 6.7e-107 392.1 494 50.6
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 1.1e-106 391.3 364 59.1
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 2.0e-106 390.6 338 62.1
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 9.7e-106 388.3 403 53.6
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 2.2e-105 387.1 489 45.2
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 2.8e-105 386.7 459 53.4
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 3.7e-105 386.3 355 58.9
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 4.8e-105 386.0 355 59.7
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 1.4e-104 384.4 386 56.5
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 1.4e-104 384.4 324 65.7
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 2.2e-102 377.1 355 59.2
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.5e-101 374.4 379 57.0
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 2.5e-101 373.6 439 52.2
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 3.2e-101 373.2 589 42.8
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 6.3e-97 359.0 442 48.2
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.2e-97 358.6 382 57.1
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 2.0e-90 337.4 402 51.5
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.0e-86 325.1 304 63.5
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 9.8e-82 308.5 372 47.6
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.4e-80 304.7 349 51.3
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.8e-80 304.3 401 50.1
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 5.4e-80 302.8 532 41.0
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 3.5e-79 300.1 407 49.4
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.3e-78 298.1 434 45.9
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 3.8e-78 296.6 307 54.7
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 5.0e-78 296.2 338 50.9
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 6.1e-76 289.3 218 70.6
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 1.4e-75 288.1 404 41.6
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 2.9e-73 280.4 188 75.5
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 2.8e-68 263.8 231 64.5
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.8e-67 259.2 289 52.6
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 9.8e-66 255.4 295 50.2
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 2.8e-60 237.3 450 37.3
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 1.4e-59 235.0 278 49.6
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.0e-58 231.1 269 50.9
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 7.5e-58 229.2 198 58.1
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 1.3e-57 228.4 186 65.1
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 4.9e-57 226.5 278 46.0
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.1e-56 225.3 277 45.8
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 1.0e-54 218.8 154 75.3
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 1.0e-54 218.8 278 45.7
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 1.3e-54 218.4 322 41.9
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 4.7e-52 209.9 143 72.7
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 6.8e-51 206.1 311 42.1
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 5.8e-50 203.0 311 41.8
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 5.8e-50 203.0 168 62.5
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 7.6e-50 202.6 289 42.9
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 9.9e-50 202.2 280 45.0
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 3.2e-48 197.2 169 61.5
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 1.6e-47 194.9 202 57.4
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 1.6e-47 194.9 168 61.3
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 2.7e-47 194.1 168 61.3
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 3.9e-46 190.3 279 42.3
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 7.3e-45 186.0 315 42.9
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 6.2e-44 183.0 303 37.0
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 2.6e-42 177.6 187 50.3
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.9e-37 161.4 181 49.2
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 4.3e-37 160.2 122 65.6
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 9.0e-35 152.5 293 33.4
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 4.6e-31 140.2 186 42.5
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 6.0e-31 139.8 213 44.1
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 7.9e-31 139.4 115 64.3
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 3.0e-30 137.5 382 29.3
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 3.9e-30 137.1 99 75.8
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 5.6e-29 133.3 143 53.8
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 2.1e-28 131.3 186 43.5
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.8e-25 120.6 222 38.3
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 1.8e-19 101.7 284 32.7
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 9.0e-19 99.4 90 52.2
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 4.5e-18 97.1 95 50.5
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 1.3e-17 95.5 94 50.0
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 1.7e-17 95.1 215 30.7
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.2e-15 89.0 63 66.7
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 2.1e-15 88.2 133 42.9
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.3e-14 85.5 132 42.4
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 2.3e-14 84.7 66 57.6
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 8.7e-14 82.8 51 68.6
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 3.7e-12 77.4 97 51.5
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 3.7e-12 77.4 187 35.3
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.4e-11 75.5 41 87.8
SHI11060 Sapria himalayana HOM05D001353 ORTHO05D005187 9.3e-08 62.8 79 53.2
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 1.6e-07 62.0 54 63.0
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 1.8e-06 58.5 30 86.7


User provided reference genes

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