Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 0.0e+00 1194.5 658 100.0
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 3.7e-240 835.1 716 64.8
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.6e-230 803.1 720 62.8
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 1.2e-214 750.4 716 61.3
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 6.6e-213 744.6 714 61.2
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 3.0e-205 719.2 714 61.8
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.4e-202 709.5 715 57.6
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 2.0e-201 706.4 713 58.9
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 3.4e-201 705.7 716 58.4
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 5.4e-199 698.4 695 59.0
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.2e-198 697.2 714 56.7
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 7.8e-198 694.5 713 57.1
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 3.9e-197 692.2 713 56.5
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 1.9e-196 689.9 699 60.8
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 4.3e-196 688.7 714 57.6
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 9.0e-194 681.0 714 56.7
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 2.2e-192 676.4 714 55.9
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 2.4e-191 672.9 715 55.9
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 9.3e-191 671.0 716 56.7
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 4.6e-190 668.7 725 55.3
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 6.0e-190 668.3 727 55.6
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 3.0e-189 666.0 715 56.1
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 3.0e-189 666.0 713 55.7
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 8.7e-189 664.5 731 54.9
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.1e-188 664.1 716 56.0
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 1.1e-188 664.1 715 54.8
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.3e-188 662.5 716 56.1
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 9.6e-188 661.0 714 55.0
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 3.6e-187 659.1 713 54.7
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.1e-186 657.5 716 56.4
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 1.8e-186 656.8 739 54.8
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 3.1e-186 656.0 702 58.3
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.0e-186 655.6 716 55.7
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 1.5e-185 653.7 731 54.0
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.5e-185 653.7 709 54.6
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 9.9e-185 651.0 717 54.8
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 4.9e-184 648.7 713 55.1
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.9e-183 646.7 708 56.2
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 3.0e-181 639.4 701 55.8
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 2.5e-180 636.3 715 53.1
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 1.3e-179 634.0 714 52.7
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 8.1e-179 631.3 716 53.6
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 1.8e-178 630.2 690 58.0
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 5.3e-178 628.6 715 51.9
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 6.9e-178 628.2 731 51.8
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 2.6e-177 626.3 713 52.3
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 7.6e-177 624.8 703 55.3
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 1.0e-176 624.4 697 53.2
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.0e-176 624.4 714 52.4
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.7e-176 623.6 698 53.2
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 1.4e-175 620.5 714 52.7
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 1.9e-175 620.2 718 52.1
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 1.2e-174 617.5 717 53.0
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 1.2e-174 617.5 714 52.9
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 4.6e-174 615.5 712 53.8
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 1.8e-173 613.6 711 52.0
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 8.7e-173 611.3 711 51.6
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.1e-172 610.9 687 53.0
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 1.1e-172 610.9 716 54.9
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 2.5e-172 609.8 723 52.3
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 5.7e-172 608.6 685 52.6
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 1.3e-171 607.4 715 51.7
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 4.8e-171 605.5 713 52.5
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 1.5e-169 600.5 716 52.4
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 3.4e-169 599.4 713 51.1
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 7.6e-169 598.2 716 51.0
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.6e-169 598.2 713 52.2
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 1.7e-168 597.0 716 51.3
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 2.2e-168 596.7 712 51.5
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 6.5e-168 595.1 719 51.3
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 3.2e-167 592.8 724 52.3
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 1.6e-166 590.5 712 50.1
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 2.7e-166 589.7 717 50.3
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 2.7e-166 589.7 690 51.0
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 1.3e-165 587.4 719 50.1
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 4.3e-164 582.4 731 50.1
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 9.7e-164 581.3 727 50.3
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 1.6e-163 580.5 733 49.8
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 6.3e-163 578.6 712 49.9
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 8.2e-163 578.2 712 49.4
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.1e-162 577.8 718 49.3
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 9.4e-159 564.7 714 48.7
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 1.6e-158 563.9 715 48.5
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 3.6e-158 562.8 714 49.3
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 3.6e-158 562.8 725 48.8
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 7.9e-158 561.6 713 50.4
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 8.2e-155 551.6 712 49.4
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 3.1e-154 549.7 871 42.6
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 6.9e-154 548.5 726 48.5
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 1.2e-153 547.7 715 48.7
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 3.4e-153 546.2 715 47.0
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 5.9e-153 545.4 717 47.8
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 7.7e-153 545.0 679 49.5
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.7e-152 543.9 672 50.3
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 8.5e-152 541.6 719 48.7
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 1.9e-151 540.4 721 48.0
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 4.2e-151 539.3 720 48.5
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 1.6e-150 537.3 721 48.0
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 3.6e-150 536.2 719 48.0
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 1.8e-149 533.9 719 47.7
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 1.1e-148 531.2 715 47.7
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 1.5e-148 530.8 715 48.1
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 1.5e-148 530.8 320 86.2
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 3.3e-148 529.6 722 45.8
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 4.4e-148 529.3 714 48.0
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 5.7e-148 528.9 719 48.1
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 2.2e-147 526.9 719 47.7
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 2.2e-147 526.9 719 47.7
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 4.8e-147 525.8 719 47.7
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 8.2e-147 525.0 720 48.1
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 1.1e-146 524.6 719 47.4
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.8e-146 523.9 720 46.9
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 6.5e-144 515.4 706 47.6
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 6.5e-144 515.4 722 47.6
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 1.1e-143 514.6 724 46.5
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 6.1e-142 508.8 718 46.0
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 1.4e-141 507.7 721 47.6
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 4.0e-141 506.1 646 49.5
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 9.1e-138 495.0 714 46.4
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.0e-136 491.5 721 45.4
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 5.0e-136 489.2 697 46.8
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 7.2e-135 485.3 732 45.2
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 7.2e-135 485.3 711 44.9
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 1.4e-133 481.1 711 46.6
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 6.8e-133 478.8 715 46.3
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 5.9e-129 465.7 325 75.1
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 8.8e-125 451.8 323 75.2
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.5e-116 422.2 322 70.8
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 9.2e-114 415.2 729 40.1
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 3.3e-111 406.8 322 66.5
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 3.3e-111 406.8 322 66.5
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 6.4e-99 365.9 583 42.5
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 1.9e-87 327.8 753 37.1
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 9.6e-87 325.5 549 42.8
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 2.8e-86 323.9 579 40.1
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 7.6e-76 289.3 734 34.2
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 4.2e-74 283.5 580 38.1
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 1.0e-72 278.9 776 32.9
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 2.8e-62 244.2 363 42.1
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.4e-58 231.9 151 80.1
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 3.2e-58 230.7 496 40.7
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 9.3e-58 229.2 379 44.6
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 1.5e-55 221.9 374 39.8
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.3e-54 218.8 352 49.1
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 8.5e-51 206.1 343 41.1
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 1.3e-48 198.7 363 38.6
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 5.1e-48 196.8 383 35.5
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 7.7e-44 183.0 245 45.3
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.5e-42 177.9 287 45.3
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 2.7e-41 174.5 152 56.6
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 3.6e-41 174.1 362 35.1
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.2e-38 164.9 351 35.6
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 5.0e-35 153.7 163 54.6
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 8.5e-27 126.3 69 89.9
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 7.2e-26 123.2 69 85.5
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 1.2e-25 122.5 252 32.9
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 2.8e-22 111.3 159 40.3
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.4e-21 109.0 62 87.1
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.4e-21 108.2 57 94.7
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 7.7e-20 103.2 78 67.9
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 3.8e-19 100.9 177 39.0
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.1e-18 99.4 76 59.2
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.5e-18 97.1 111 48.6
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 1.2e-17 95.9 59 79.7
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 1.0e-16 92.8 59 78.0
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.0e-16 92.8 111 46.8
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 7.5e-15 86.7 162 37.0
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 1.6e-12 79.0 317 26.2
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.8e-09 68.2 51 66.7
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 2.8e-09 68.2 101 47.5
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 3.0e-08 64.7 106 36.8


User provided reference genes

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