Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.2e-150 535.0 269 100.0
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.2e-150 535.0 269 100.0
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.3e-77 293.9 206 76.2
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 2.1e-72 276.6 196 75.0
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 2.1e-72 276.6 166 86.1
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 3.6e-72 275.8 197 75.6
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 4.6e-72 275.4 193 77.2
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 4.6e-72 275.4 193 77.2
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 7.9e-72 274.6 193 77.2
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 7.9e-72 274.6 193 76.7
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 1.8e-71 273.5 193 76.7
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 2.3e-71 273.1 196 74.5
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 3.0e-71 272.7 193 76.7
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 3.9e-71 272.3 169 85.2
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 3.9e-71 272.3 169 85.2
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 3.9e-71 272.3 169 85.2
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 3.9e-71 272.3 169 85.2
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 3.9e-71 272.3 169 85.2
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 3.9e-71 272.3 169 85.2
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 3.9e-71 272.3 169 85.2
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 3.9e-71 272.3 169 85.2
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 3.9e-71 272.3 169 85.2
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 3.9e-71 272.3 169 85.2
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 5.1e-71 271.9 178 82.6
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 5.1e-71 271.9 191 75.9
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 8.7e-71 271.2 196 74.0
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.1e-70 270.8 193 76.7
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 1.5e-70 270.4 196 75.0
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 1.5e-70 270.4 169 84.0
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 1.9e-70 270.0 186 78.0
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 1.9e-70 270.0 186 78.0
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 2.5e-70 269.6 196 75.0
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 6.3e-69 265.0 165 84.8
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 6.3e-69 265.0 189 76.2
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 8.2e-69 264.6 185 77.3
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 9.1e-68 261.2 163 84.0
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 5.9e-67 258.5 196 71.4
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 5.9e-67 258.5 196 71.4
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 5.9e-67 258.5 196 71.4
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 5.9e-67 258.5 196 71.4
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 5.9e-67 258.5 196 71.4
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 5.9e-67 258.5 196 71.4
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 5.9e-67 258.5 196 71.4
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 1.0e-66 257.7 208 68.3
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.1e-65 254.2 196 71.4
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 1.1e-65 254.2 197 71.1
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 1.1e-65 254.2 196 71.4
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 1.4e-65 253.8 169 76.9
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 1.9e-65 253.4 193 68.9
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 4.2e-65 252.3 166 77.7
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 1.6e-64 250.4 244 59.0
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 1.6e-64 250.4 244 59.0
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 1.6e-64 250.4 196 69.9
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 3.0e-63 246.1 249 58.2
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 6.3e-61 238.4 169 72.2
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 1.4e-60 237.3 153 80.4
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 3.1e-60 236.1 169 72.2
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 4.1e-60 235.7 145 83.4
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 5.9e-59 231.9 169 77.5
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 9.1e-52 208.0 223 55.6
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 1.6e-51 207.2 196 62.2
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 6.5e-42 175.3 123 78.9
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 3.6e-40 169.5 126 70.6
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.6e-40 169.5 126 69.8
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 4.7e-40 169.1 126 70.6
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 6.1e-40 168.7 126 69.8
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 6.1e-40 168.7 126 69.8
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 6.1e-40 168.7 126 69.8
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 6.1e-40 168.7 126 69.8
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 6.1e-40 168.7 126 69.8
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 8.0e-40 168.3 126 70.6
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 6.8e-39 165.2 126 69.0
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 4.8e-37 159.1 126 66.7
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 8.3e-37 158.3 107 80.4
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 1.6e-35 154.1 123 66.7
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 1.9e-33 147.1 151 57.6
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 2.8e-32 143.3 93 81.7
Sed0022989 Sechium edule HOM05D004291 ORTHO05D005620 9.8e-30 134.8 90 77.8
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 4.9e-29 132.5 80 86.2
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 4.9e-29 132.5 80 86.2
unitig_87.g27941 Utricularia gibba HOM05D004291 ORTHO05D005620 2.4e-28 130.2 91 75.8
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 5.0e-26 122.5 110 65.5
Nn1g09996 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.5e-25 120.9 91 70.3
Nn1g10097 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.5e-25 120.9 91 70.3
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 4.3e-25 119.4 85 76.5
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 3.6e-24 116.3 73 84.9
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.8e-23 114.0 103 61.2
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.8e-23 114.0 103 61.2
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 1.8e-23 114.0 103 61.2
SHI09335 Sapria himalayana HOM05D004291 ORTHO05D005620 3.0e-23 113.2 75 78.7
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 5.2e-23 112.5 135 50.4
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 6.4e-21 105.5 58 89.7
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.2e-20 103.2 121 50.4
ATR0461G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 7.0e-20 102.1 62 82.3
PGSC0003DMG400013864 Solanum tuberosum HOM05D004291 ORTHO05D005620 7.0e-20 102.1 75 70.7
PGSC0003DMG401031302 Solanum tuberosum HOM05D004291 ORTHO05D005620 1.0e-18 98.2 69 72.5
AUR62042348 Chenopodium quinoa HOM05D004291 ORTHO05D005620 2.3e-18 97.1 59 83.1
AUR62001625 Chenopodium quinoa HOM05D004291 ORTHO05D005620 1.1e-17 94.7 59 81.4
HanXRQMTg0579451 Helianthus annuus HOM05D004291 ORTHO05D005620 2.5e-17 93.6 59 81.4
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 4.3e-17 92.8 100 41.0
TAR022G0001 Trochodendron aralioides HOM05D004291 ORTHO05D005620 2.8e-16 90.1 90 53.3
Haze_27535 Corylus avellana HOM05D004291 ORTHO05D005620 4.7e-16 89.4 172 31.4
Psat0s4951g0120 Pisum sativum HOM05D004291 ORTHO05D005620 4.7e-16 89.4 66 75.8
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.7e-16 89.4 58 77.6
Lsat_1_v5_gn_6_95160 Lactuca sativa HOM05D004291 ORTHO05D005620 6.2e-16 89.0 88 59.1
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 6.2e-16 89.0 52 84.6
Sabra01G0004500 Salix brachista HOM05D000521 ORTHO05D006286 1.5e-14 84.3 76 61.8
Hma1.2p1_0716F.1_g208040 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 3.7e-13 79.7 74 56.8
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.7e-13 79.7 50 84.0
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 1.1e-12 78.2 48 83.3
CDE02G1233 Ceratophyllum demersum HOM05D004291 ORTHO05D005620 1.4e-12 77.8 59 69.5
Nitab4.5_0000280g0210 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.9e-12 77.4 82 51.2
HanXRQChr00c0192g0572351 Helianthus annuus HOM05D004291 ORTHO05D005620 9.2e-12 75.1 43 88.4
Nitab4.5_0001819g0010 Nicotiana tabacum HOM05D004291 ORTHO05D005620 2.0e-11 73.9 50 74.0
BolSC28t60391H Brassica oleracea HOM05D004291 ORTHO05D005620 6.0e-11 72.4 47 78.7
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 6.0e-11 72.4 126 38.1
SGA_v2.0_scaffold420G51405 Striga asiatica HOM05D004291 ORTHO05D005620 6.0e-11 72.4 75 57.3
Solyc02g021365.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 7.8e-11 72.0 59 61.0
Oeu042472.1 Olea europaea HOM05D004291 ORTHO05D005620 1.0e-10 71.6 73 50.7
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 1.0e-10 71.6 49 73.5
BraSC177t45746Z Brassica rapa HOM05D004291 ORTHO05D005620 1.1e-09 68.2 105 42.9
BraSC77t46631Z Brassica rapa HOM05D004291 ORTHO05D005620 1.1e-09 68.2 74 50.0
SHI33022 Sapria himalayana HOM05D004291 ORTHO05D005620 1.1e-09 68.2 50 76.0
Lalb_Chr24g0400601 Lupinus albus HOM05D004291 ORTHO05D005620 1.2e-08 64.7 44 72.7
Ca_16076_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 2.1e-08 63.9 45 71.1
SHI06816 Sapria himalayana HOM05D004291 ORTHO05D005620 4.7e-08 62.8 65 50.8
Nitab4.5_0007876g0040 Nicotiana tabacum HOM05D004291 ORTHO05D005620 6.2e-08 62.4 75 50.7
Mapoly0007s0023 Marchantia polymorpha HOM05D004291 ORTHO05D005620 1.1e-07 61.6 49 63.3
CAN.G184.83 Capsicum annuum HOM05D004291 ORTHO05D005620 1.4e-07 61.2 54 59.3
SMO053G0010 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 2.3e-07 60.5 87 43.7
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 4.0e-07 59.7 56 53.6
CAN.G1897.5 Capsicum annuum HOM05D004291 ORTHO05D005620 1.2e-06 58.2 45 66.7
SMO053G0014 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 1.5e-06 57.8 63 46.0
ATR0461G002 Amborella trichopoda HOM05D004291 ORTHO05D005620 2.6e-06 57.0 36 77.8
Sc08g0004800 Simmondsia chinensis HOM05D004291 ORTHO05D005620 2.6e-06 57.0 47 63.8
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 4.4e-06 56.2 48 56.2


User provided reference genes

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