Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 5.7e-83 310.8 155 100.0
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 8.6e-71 270.4 155 82.6
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 3.3e-70 268.5 155 84.5
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 9.5e-70 266.9 155 83.2
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 2.1e-69 265.8 155 81.9
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 4.7e-69 264.6 155 81.3
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 6.2e-69 264.2 155 81.3
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 8.0e-69 263.8 155 81.9
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.1e-68 263.5 155 80.6
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 1.4e-68 263.1 155 80.6
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.4e-68 263.1 155 81.3
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.8e-68 262.7 155 81.3
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 3.1e-68 261.9 155 80.0
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 5.2e-68 261.2 155 82.6
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 5.2e-68 261.2 155 80.6
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 5.2e-68 261.2 154 80.5
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 1.2e-67 260.0 155 79.4
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 2.0e-67 259.2 155 78.7
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 5.8e-67 257.7 155 81.3
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 5.8e-67 257.7 155 81.9
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 1.7e-66 256.1 155 80.0
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 1.4e-65 253.1 155 76.1
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.4e-65 253.1 155 76.1
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 1.9e-65 252.7 155 80.0
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 2.4e-65 252.3 155 79.4
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 2.4e-65 252.3 155 78.7
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 3.2e-65 251.9 155 75.5
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.1e-65 251.5 155 76.1
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 4.1e-65 251.5 155 75.5
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 2.1e-64 249.2 155 77.4
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 2.1e-64 249.2 155 80.0
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 3.5e-64 248.4 145 81.4
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 4.6e-64 248.1 155 74.8
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 4.6e-64 248.1 155 75.5
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 76.1
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 72.3
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 74.2
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 75.5
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 1.7e-63 246.1 155 75.5
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 1.7e-63 246.1 155 75.5
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 2.3e-63 245.7 155 74.8
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 3.0e-63 245.4 155 77.4
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 5.1e-63 244.6 155 74.2
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 6.6e-63 244.2 155 71.6
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 1.5e-62 243.0 155 73.5
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 73.5
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 9.5e-62 240.4 155 73.5
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.2e-61 240.0 156 75.0
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.2e-61 240.0 156 75.0
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 1.6e-61 239.6 155 73.5
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 72.3
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 4.7e-61 238.0 155 74.2
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.7e-61 238.0 155 74.2
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 6.2e-61 237.7 155 72.3
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 71.0
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 72.3
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 4.0e-60 235.0 152 73.7
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 8.9e-60 233.8 155 72.3
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 71.0
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 2.6e-59 232.3 153 74.5
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.4e-59 231.5 150 76.7
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 4.4e-59 231.5 155 72.3
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.8e-59 231.1 155 69.7
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.8e-59 231.1 155 69.7
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 5.8e-59 231.1 174 64.9
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 7.5e-59 230.7 155 72.3
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 9.9e-59 230.3 155 71.0
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.3e-58 229.9 155 70.3
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 69.7
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 70.3
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 72.3
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 69.7
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 71.0
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 69.0
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 71.6
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 6.4e-58 227.6 155 71.0
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 6.4e-58 227.6 155 69.0
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 8.3e-58 227.3 150 76.0
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 1.9e-57 226.1 155 69.7
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 3.2e-57 225.3 152 71.7
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 4.1e-57 224.9 154 68.8
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 2.1e-56 222.6 155 67.1
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 3.5e-56 221.9 151 70.9
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 4.6e-56 221.5 155 67.7
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 6.0e-56 221.1 214 55.1
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 1.0e-55 220.3 147 70.7
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 1.0e-55 220.3 155 66.5
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 1.3e-55 219.9 155 67.7
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.3e-55 219.9 152 69.1
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 3.9e-55 218.4 155 69.7
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 6.6e-55 217.6 156 67.9
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 6.6e-55 217.6 155 68.4
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 6.6e-55 217.6 145 71.0
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 1.1e-54 216.9 156 67.3
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 1.9e-54 216.1 155 66.5
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 1.9e-54 216.1 153 68.0
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 3.3e-54 215.3 156 67.3
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 7.3e-54 214.2 147 70.7
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 7.3e-54 214.2 147 68.7
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 6.2e-53 211.1 131 78.6
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 5.2e-52 208.0 156 65.4
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 8.9e-52 207.2 156 63.5
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 8.9e-52 207.2 131 74.8
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 1.2e-51 206.8 146 71.9
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 1.2e-51 206.8 156 66.0
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 3.8e-50 201.8 152 64.5
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 4.9e-50 201.4 188 56.4
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 6.4e-50 201.1 155 65.8
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 8.4e-50 200.7 127 74.8
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 1.4e-49 199.9 155 63.9
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.2e-48 196.8 148 62.8
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 2.1e-48 196.1 152 59.9
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 3.5e-48 195.3 162 60.5
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 3.9e-47 191.8 154 58.4
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 3.9e-47 191.8 154 59.1
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 5.1e-47 191.4 154 59.1
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 5.1e-47 191.4 154 59.1
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 6.6e-47 191.0 153 59.5
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 8.1e-45 184.1 153 58.8
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 2.4e-44 182.6 128 66.4
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.1e-41 173.7 114 74.6
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 1.2e-40 170.2 146 58.9
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 2.8e-37 159.1 99 76.8
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 1.1e-36 157.1 144 51.4
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 3.1e-36 155.6 109 67.0
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 4.0e-36 155.2 109 67.9
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 4.0e-36 155.2 103 71.8
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 9.0e-36 154.1 90 81.1
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.5e-35 153.3 104 69.2
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.4e-33 146.7 147 55.1
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 8.7e-31 137.5 156 46.8
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 7.4e-30 134.4 83 74.7
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 3.7e-29 132.1 109 60.6
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 5.3e-28 128.3 128 52.3
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 7.1e-25 117.9 152 44.7
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 2.4e-20 102.8 153 37.3
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 1.0e-18 97.4 130 43.8
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.8e-18 95.5 61 72.1
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.8e-18 95.5 61 72.1
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.2e-17 92.0 68 63.2
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.0e-15 87.4 50 78.0
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 6.7e-15 84.7 139 34.5
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.1e-14 84.0 68 60.3
Hund09752 Selenicereus undatus HOM05D005446 ORTHO05D006597 7.2e-09 64.7 40 70.0


User provided reference genes

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