Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1434.9 710 100.0
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1278.1 711 88.0
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1193.7 711 81.9
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1170.2 706 81.2
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1153.3 706 79.0
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 0.0e+00 1146.7 700 79.9
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1132.9 711 77.4
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1128.6 705 77.3
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1119.8 707 76.8
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1119.0 711 76.8
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1118.2 706 75.8
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1114.8 706 77.2
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1113.6 712 75.8
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1110.9 712 76.4
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1108.6 703 76.1
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1107.4 712 76.3
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1107.0 711 76.2
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1105.9 714 75.6
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 0.0e+00 1102.8 697 76.9
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1099.7 702 76.4
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1099.3 712 75.7
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 0.0e+00 1098.6 716 76.5
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 0.0e+00 1096.6 711 75.4
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1096.6 708 75.4
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1095.9 706 75.6
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1089.3 700 75.6
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 0.0e+00 1089.3 716 75.8
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1083.6 700 76.0
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 0.0e+00 1077.4 694 73.9
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 0.0e+00 1076.6 714 73.1
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 0.0e+00 1075.1 703 73.4
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 4.9e-312 1073.9 706 75.4
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 4.9e-312 1073.5 704 73.2
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 9.7e-312 1072.8 706 75.4
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 2.4e-311 1071.6 705 74.5
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 7.3e-311 1070.1 703 73.8
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 2.1e-310 1068.5 706 74.4
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 3.7e-310 1067.8 706 72.9
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.8e-309 1065.4 704 75.0
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 4.1e-309 1064.3 703 72.7
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 1.2e-308 1062.8 703 73.8
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 2.0e-308 1062.0 706 73.9
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 2.6e-308 1061.6 711 73.1
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 5.9e-308 1060.4 707 73.6
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 1.0e-307 1059.7 705 73.0
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 1.3e-307 1059.3 788 68.0
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 6.5e-307 1057.0 716 73.2
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 8.5e-307 1056.6 708 73.3
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 7.2e-306 1053.5 701 74.0
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 1.6e-305 1052.4 712 72.5
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 2.1e-305 1052.0 740 71.2
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 2.1e-305 1052.0 708 73.2
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 6.1e-305 1050.4 712 72.5
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 6.1e-305 1050.4 711 72.3
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 6.1e-305 1050.4 705 73.9
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 7.9e-305 1050.0 705 73.6
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 1.0e-304 1049.7 711 72.6
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 1.8e-304 1048.9 712 73.3
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 8.8e-304 1046.6 728 72.7
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 2.2e-302 1042.0 705 72.9
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 4.8e-302 1040.8 724 70.2
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 2.2e-299 1031.9 708 71.9
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 3.8e-299 1031.2 708 72.0
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 3.2e-298 1028.1 698 72.5
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 7.2e-298 1026.9 708 71.5
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 6.7e-296 1020.4 713 69.4
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 8.2e-294 1013.4 657 74.1
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.2e-292 1009.6 716 71.2
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 3.8e-291 1004.6 707 69.3
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 3.2e-290 1001.5 706 69.0
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 7.2e-290 1000.3 706 69.1
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 9.4e-290 1000.0 701 69.9
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 1.2e-289 999.6 706 69.0
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 1.2e-289 999.6 703 69.7
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 1.6e-289 999.2 697 70.2
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 2.1e-289 998.8 708 68.8
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 3.6e-289 998.0 709 69.0
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 3.6e-289 998.0 691 70.5
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 4.7e-289 997.7 710 68.5
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 4.0e-288 994.6 701 69.2
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 2.2e-286 988.8 709 68.4
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 2.8e-286 988.4 706 68.7
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 1.2e-284 983.0 701 68.9
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 8.5e-283 976.9 778 64.3
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 7.7e-276 953.7 760 63.0
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 3.4e-271 938.3 702 66.7
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 3.7e-270 934.9 562 80.2
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 2.3e-267 925.6 705 66.2
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 5.0e-267 924.5 712 66.2
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 5.6e-266 921.0 591 75.1
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 2.3e-264 915.6 702 67.4
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 5.2e-264 914.4 598 73.7
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 4.1e-261 904.8 681 65.3
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 3.9e-259 898.3 712 65.3
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 5.0e-259 897.9 716 62.7
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 2.9e-246 855.5 712 62.2
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 2.3e-243 845.9 540 75.2
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 2.8e-233 812.4 519 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 2.7e-212 742.7 696 54.3
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 1.5e-210 736.9 693 54.4
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 7.4e-202 708.0 734 55.2
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 8.7e-195 684.5 699 51.2
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 2.6e-186 656.4 878 43.7
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.7e-182 643.7 452 68.6
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 1.0e-174 617.8 842 43.5
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 8.8e-171 604.7 690 48.3
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 5.7e-170 602.1 388 73.7
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 2.2e-161 573.5 488 58.2
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 1.9e-149 533.9 740 43.9
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 5.7e-146 522.3 757 42.4
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 3.2e-136 490.0 746 41.2
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 7.3e-133 478.8 811 37.5
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 2.3e-126 457.2 721 37.7
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 3.0e-118 430.3 333 67.9
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 7.3e-117 425.6 303 71.6
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 7.1e-112 409.1 355 59.4
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.0e-81 308.9 201 73.6
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 1.7e-76 291.6 269 54.3
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 2.5e-64 251.1 164 73.2
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 5.5e-64 250.0 196 67.9
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 1.1e-51 209.1 138 73.2
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 2.9e-41 174.5 112 78.6
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 9.8e-37 159.5 102 75.5
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 8.6e-33 146.4 175 50.3
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 7.3e-32 143.3 115 58.3
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.0e-30 139.4 100 68.0
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 3.0e-25 121.3 109 56.9
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 4.4e-21 107.5 158 43.7
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 1.3e-20 105.9 61 82.0
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 7.8e-18 96.7 62 71.0
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 6.2e-15 87.0 59 71.2
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 2.9e-12 78.2 62 59.7
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 1.6e-10 72.4 45 75.6
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 1.3e-09 69.3 46 63.0
SHI28556 Sapria himalayana HOM05D005873 ORTHO05D007582 2.3e-09 68.6 49 53.1
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 2.4e-06 58.5 39 74.4


User provided reference genes

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