Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 4.4e-169 598.2 383 100.0
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 3.5e-65 253.1 426 46.0
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 4.3e-63 246.1 450 53.8
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 6.8e-61 238.8 425 45.2
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 9.3e-58 228.4 452 40.9
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 1.2e-57 228.0 426 47.4
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 7.8e-57 225.3 418 44.0
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 2.3e-56 223.8 452 39.6
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 8.7e-56 221.9 422 48.3
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 3.3e-55 219.9 427 43.1
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 4.3e-55 219.5 405 42.7
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 1.6e-54 217.6 449 46.8
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 1.8e-53 214.2 424 44.6
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 9.0e-53 211.8 422 43.8
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 1.2e-52 211.5 397 46.1
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 1.5e-52 211.1 414 44.7
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 2.6e-52 210.3 436 43.6
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 3.4e-52 209.9 438 47.3
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 2.2e-51 207.2 404 44.1
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 3.8e-51 206.5 398 44.0
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 6.4e-51 205.7 443 46.0
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 8.4e-51 205.3 422 48.3
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 5.4e-50 202.6 485 45.4
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 1.2e-49 201.4 415 41.2
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 1.2e-49 201.4 385 44.9
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 2.1e-49 200.7 483 46.0
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 3.5e-49 199.9 460 39.8
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 6.0e-49 199.1 418 48.8
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 2.3e-48 197.2 476 41.4
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 3.0e-48 196.8 487 42.1
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 3.0e-48 196.8 427 44.3
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 3.9e-48 196.4 508 35.2
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 5.1e-48 196.1 419 48.0
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 8.7e-48 195.3 420 47.6
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 1.9e-47 194.1 435 46.4
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 3.3e-47 193.4 469 40.5
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 3.3e-47 193.4 477 40.3
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 4.3e-47 193.0 434 42.4
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 4.3e-47 193.0 434 42.4
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 9.6e-47 191.8 407 46.7
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 1.3e-46 191.4 426 46.7
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 8.1e-46 188.7 459 41.2
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 1.1e-45 188.3 457 37.0
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.4e-45 188.0 444 47.7
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 3.1e-45 186.8 421 46.1
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 6.9e-45 185.7 541 41.0
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 6.9e-45 185.7 461 43.2
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 9.0e-45 185.3 485 40.0
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 1.2e-44 184.9 507 42.4
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 5.8e-44 182.6 401 42.4
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 1.3e-43 181.4 404 42.3
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 1.7e-43 181.0 413 44.1
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 4.9e-43 179.5 428 41.4
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 4.9e-43 179.5 506 42.1
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 4.9e-43 179.5 461 37.1
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 4.9e-43 179.5 461 37.1
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 8.4e-43 178.7 427 44.7
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 1.6e-41 174.5 570 35.6
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 1.0e-40 171.8 425 44.7
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 3.0e-40 170.2 559 32.0
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 3.0e-40 170.2 419 45.3
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 9.6e-39 165.2 571 33.6
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 2.1e-38 164.1 93 91.4
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 3.7e-38 163.3 461 39.9
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 4.8e-38 162.9 461 36.2
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 4.8e-38 162.9 440 35.2
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 8.1e-38 162.2 498 33.9
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 3.1e-37 160.2 108 84.3
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 9.0e-37 158.7 434 39.9
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 9.0e-37 158.7 602 33.6
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 1.5e-36 157.9 463 40.2
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 1.5e-36 157.9 105 80.0
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 1.5e-36 157.9 539 35.4
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 3.4e-36 156.8 485 39.2
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 4.5e-36 156.4 528 39.4
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 5.8e-36 156.0 457 35.9
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 1.7e-35 154.5 457 35.2
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 2.2e-35 154.1 441 41.0
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 2.2e-35 154.1 108 79.6
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 2.9e-35 153.7 441 41.3
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 3.8e-35 153.3 532 33.1
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 4.9e-35 152.9 452 34.5
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 4.9e-35 152.9 541 39.7
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 8.4e-35 152.1 447 34.5
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 8.4e-35 152.1 512 39.8
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.1e-34 151.8 95 83.2
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 5.5e-34 149.4 482 35.9
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 1.6e-33 147.9 486 38.7
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 4.6e-33 146.4 507 35.3
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 4.6e-33 146.4 82 92.7
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 6.0e-33 146.0 512 33.8
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 1.0e-32 145.2 402 40.5
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 3.9e-32 143.3 511 38.4
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 3.3e-31 140.2 114 70.2
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 5.7e-31 139.4 80 88.8
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 4.8e-30 136.3 588 36.2
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 6.3e-30 136.0 562 32.2
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 8.2e-30 135.6 128 62.5
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 9.0e-29 132.1 543 31.5
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.0e-28 131.0 409 39.1
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 5.0e-27 126.3 536 33.8
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.9e-26 124.4 625 29.1
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.9e-26 124.4 629 28.8
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 2.5e-26 124.0 630 29.0
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.5e-26 124.0 630 29.0
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 4.2e-26 123.2 619 31.8
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 9.3e-26 122.1 108 66.7
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 1.0e-24 118.6 519 32.4
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 2.3e-24 117.5 469 38.4
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 2.5e-23 114.0 75 77.3
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 1.8e-21 107.8 477 30.2
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 1.2e-20 105.1 155 49.0
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 1.2e-20 105.1 106 56.6
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 1.5e-20 104.8 81 69.1
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.0e-20 104.4 111 60.4
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.4e-18 98.2 63 81.0
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 3.6e-17 93.6 219 45.2
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 4.6e-17 93.2 105 57.1
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 7.9e-17 92.4 53 88.7
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.0e-16 92.0 113 47.8
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 8.8e-16 89.0 373 30.0
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 2.6e-15 87.4 59 76.3
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 1.3e-14 85.1 194 37.6
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 8.2e-14 82.4 48 85.4
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 1.8e-13 81.3 146 44.5
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 5.9e-12 76.3 74 55.4
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.9e-08 63.5 95 38.9
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 4.4e-07 60.1 342 26.0
Potri.016G000501 Populus trichocarpa HOM05D005328 ORTHO05D006049 5.7e-07 59.7 62 64.5
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 2.8e-06 57.4 78 44.9


User provided reference genes

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