Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07419 Nelumbo nucifera HOM05D001529 ORTHO05D036607 4.4e-20 100.1 44 100.0
Ah.06g192740 Amaranthus hybridus HOM05D001529 ORTHO05D007595 4.2e-15 83.6 43 86.0
AUR62000956 Chenopodium quinoa HOM05D001529 ORTHO05D007595 4.2e-15 83.6 43 86.0
AUR62005012 Chenopodium quinoa HOM05D001529 ORTHO05D007595 4.2e-15 83.6 43 86.0
Nn1g03283 Nelumbo nucifera HOM05D001529 ORTHO05D007595 4.2e-15 83.6 43 86.0
Phvul.009G238000 Phaseolus vulgaris HOM05D001529 ORTHO05D007595 4.2e-15 83.6 43 86.0
Hund24142 Selenicereus undatus HOM05D001529 ORTHO05D007595 4.2e-15 83.6 43 86.0
EL10Ac4g09205 Beta vulgaris HOM05D001529 ORTHO05D007595 5.5e-15 83.2 43 83.7
Ca_16364_v3 Cicer arietinum L. HOM05D001529 ORTHO05D007595 7.2e-15 82.8 43 83.7
Eucgr.A01064 Eucalyptus grandis HOM05D001529 ORTHO05D007595 9.4e-15 82.4 43 83.7
Eucgr.A01066 Eucalyptus grandis HOM05D001529 ORTHO05D007595 9.4e-15 82.4 43 83.7
Hma1.2p1_0405F.1_g145710 Hydrangea macrophylla HOM05D001529 ORTHO05D007595 1.2e-14 82.0 43 83.7
Hma1.2p1_0405F.1_g145720 Hydrangea macrophylla HOM05D001529 ORTHO05D007595 1.2e-14 82.0 43 83.7
Glyma.19G191200 Glycine max HOM05D001529 ORTHO05D007595 1.6e-14 81.6 43 83.7
Lj6g0006977 Lotus japonicus HOM05D001529 ORTHO05D007595 1.6e-14 81.6 43 83.7
Os02g0538000 Oryza sativa ssp. japonica HOM05D001529 ORTHO05D007595 1.6e-14 81.6 43 83.7
VMungo1080G0307 Vigna mungo HOM05D001529 ORTHO05D007595 1.6e-14 81.6 43 83.7
Duzib138G1061 Durio zibethinus HOM05D001529 ORTHO05D007595 2.1e-14 81.3 43 83.7
Gohir.A07G167800 Gossypium hirsutum HOM05D001529 ORTHO05D007595 2.1e-14 81.3 43 83.7
Gohir.D07G173400 Gossypium hirsutum HOM05D001529 ORTHO05D007595 2.1e-14 81.3 43 83.7
Gorai.001G193700 Gossypium raimondii HOM05D001529 ORTHO05D007595 2.1e-14 81.3 43 83.7
TAR626G0907 Trochodendron aralioides HOM05D001529 ORTHO05D007595 2.1e-14 81.3 43 83.7
CiPaw.03G277800 Carya illinoinensis HOM05D001529 ORTHO05D007595 2.7e-14 80.9 43 83.7
Haze_12706 Corylus avellana HOM05D001529 ORTHO05D007595 2.7e-14 80.9 43 83.7
Lj1C790T8 Lonicera japonica HOM05D001529 ORTHO05D007595 2.7e-14 80.9 43 83.7
QL08p028982 Quercus lobata HOM05D001529 ORTHO05D007595 2.7e-14 80.9 43 83.7
QL93p0116_0063 Quercus lobata HOM05D001529 ORTHO05D007595 2.7e-14 80.9 43 83.7
Zm00001eb325920 Zea mays HOM05D001529 ORTHO05D007595 2.7e-14 80.9 43 81.4
CANSAT64G0296 Cannabis sativa HOM05D001529 ORTHO05D007595 3.6e-14 80.5 43 81.4
DCAR_021112 Daucus carota HOM05D001529 ORTHO05D007595 3.6e-14 80.5 43 81.4
Lsat_1_v5_gn_5_123180 Lactuca sativa HOM05D001529 ORTHO05D007595 3.6e-14 80.5 43 81.4
Lalb_Chr14g0362561 Lupinus albus HOM05D001529 ORTHO05D007595 3.6e-14 80.5 43 81.4
PGR042G1774 Punica granatum HOM05D001529 ORTHO05D007595 3.6e-14 80.5 43 81.4
MBI19_g06153_MAGBIO Magnolia biondii HOM05D001529 ORTHO05D007595 4.7e-14 80.1 43 81.4
Psat5g104480 Pisum sativum HOM05D001529 ORTHO05D007595 4.7e-14 80.1 43 83.7
TPR.G19324 Trifolium pratense HOM05D001529 ORTHO05D007595 4.7e-14 80.1 43 81.4
CSS0012949 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 6.1e-14 79.7 43 81.4
CSS0013229 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 6.1e-14 79.7 43 81.4
CDE07G1746 Ceratophyllum demersum HOM05D001529 ORTHO05D007595 6.1e-14 79.7 43 81.4
Cc00_g04140 Coffea canephora HOM05D001529 ORTHO05D007595 6.1e-14 79.7 43 81.4
Dinv07847 Davidia involucrata HOM05D001529 ORTHO05D007595 6.1e-14 79.7 43 81.4
Glyma.U010902 Glycine max HOM05D001529 ORTHO05D007595 6.1e-14 79.7 43 81.4
HanXRQChr10g0306381 Helianthus annuus HOM05D001529 ORTHO05D007595 6.1e-14 79.7 43 81.4
Oeu064362.2 Olea europaea HOM05D001529 ORTHO05D007595 6.1e-14 79.7 43 81.4
Rhsim04G0043200 Rhododendron simsii HOM05D001529 ORTHO05D007595 6.1e-14 79.7 43 81.4
vmacro09386 Vaccinium macrocarpon HOM05D001529 ORTHO05D007595 6.1e-14 79.7 43 81.4
Actinidia21451 Actinidia chinensis HOM05D001529 ORTHO05D007595 8.0e-14 79.3 43 79.1
Aqoxy4G02192 Aquilegia oxysepala HOM05D001529 ORTHO05D007595 8.0e-14 79.3 43 79.1
GSVIVG01030033001 Vitis vinifera HOM05D001529 ORTHO05D007595 8.0e-14 79.3 43 79.1
Ciclev10018290m.g Citrus clementina HOM05D001529 ORTHO05D007595 1.0e-13 79.0 43 81.4
Prupe.3G203100 Prunus persica HOM05D001529 ORTHO05D007595 1.0e-13 79.0 43 79.1
MSTRG.12244 Avicennia marina HOM05D001529 ORTHO05D007595 1.4e-13 78.6 43 81.4
Migut.H01288 Erythranthe guttata HOM05D001529 ORTHO05D007595 1.4e-13 78.6 43 81.4
MD09G1120400 Malus domestica HOM05D001529 ORTHO05D007595 1.4e-13 78.6 43 81.4
Thecc.01G188800 Theobroma cacao HOM05D001529 ORTHO05D007595 1.4e-13 78.6 43 81.4
arahy.Tifrunner.gnm1.ann1.TVN328 Arachis hypogaea HOM05D001529 ORTHO05D007595 1.8e-13 78.2 43 79.1
ECA234G3620 Erigeron canadensis HOM05D001529 ORTHO05D007595 1.8e-13 78.2 43 79.1
Nitab4.5_0004215g0030 Nicotiana tabacum HOM05D001529 ORTHO05D007595 2.3e-13 77.8 43 76.7
Atru.chr6.3341 Acer truncatum HOM05D001529 ORTHO05D007595 3.0e-13 77.4 43 81.4
FAN09G0877 Fragaria x ananassa HOM05D001529 ORTHO05D007595 3.0e-13 77.4 43 76.7
Medtr3g083180 Medicago truncatula HOM05D001529 ORTHO05D007595 3.0e-13 77.4 43 79.1
Peaxi162Scf02035g00017 Petunia axillaris HOM05D001529 ORTHO05D007595 3.0e-13 77.4 43 74.4
TWI36G1606 Tripterygium wilfordii HOM05D001529 ORTHO05D007595 3.0e-13 77.4 43 79.1
MD00G1047100 Malus domestica HOM05D001529 ORTHO05D007595 4.0e-13 77.0 43 79.1
Nitab4.5_0004358g0030 Nicotiana tabacum HOM05D001529 ORTHO05D007595 4.0e-13 77.0 43 76.7
unitig_62.g23257 Utricularia gibba HOM05D001529 ORTHO05D007595 4.0e-13 77.0 43 79.1
FvH4_6g41340 Fragaria vesca HOM05D001529 ORTHO05D007595 5.2e-13 76.6 43 76.7
FAN02G4258 Fragaria x ananassa HOM05D001529 ORTHO05D007595 5.2e-13 76.6 43 76.7
FAN05G0710 Fragaria x ananassa HOM05D001529 ORTHO05D007595 5.2e-13 76.6 43 76.7
FAN14G1621 Fragaria x ananassa HOM05D001529 ORTHO05D007595 5.2e-13 76.6 43 76.7
RcHm_v2.0_Chr2g0156891 Rosa chinensis HOM05D001529 ORTHO05D007595 5.2e-13 76.6 43 76.7
SGA_v2.0_scaffold49G18408 Striga asiatica HOM05D001529 ORTHO05D007595 5.2e-13 76.6 43 79.1
CAN.G897.4 Capsicum annuum HOM05D001529 ORTHO05D007595 6.8e-13 76.3 43 74.4
MD17G1111100 Malus domestica HOM05D001529 ORTHO05D007595 6.8e-13 76.3 43 79.1
Manes.12G062800 Manihot esculenta HOM05D001529 ORTHO05D007595 8.8e-13 75.9 43 79.1
Solyc07g048080.4 Solanum lycopersicum HOM05D001529 ORTHO05D007595 8.8e-13 75.9 43 72.1
Sopen07g024500 Solanum pennellii HOM05D001529 ORTHO05D007595 8.8e-13 75.9 43 72.1
PGSC0003DMG400006139 Solanum tuberosum HOM05D001529 ORTHO05D007595 8.8e-13 75.9 43 72.1
MD15G1401600 Malus domestica HOM05D001529 ORTHO05D036607 1.2e-12 75.5 43 76.7
Sc20g0003910 Simmondsia chinensis HOM05D001529 ORTHO05D007595 1.2e-12 75.5 43 76.7
Potri.014G162200 Populus trichocarpa HOM05D001529 ORTHO05D007595 1.5e-12 75.1 43 76.7
Sabra14G0123900 Salix brachista HOM05D001529 ORTHO05D007595 1.5e-12 75.1 43 76.7
ATR0712G164 Amborella trichopoda HOM05D001529 ORTHO05D007595 3.4e-12 73.9 43 74.4
arahy.Tifrunner.gnm1.ann1.6FNM9R Arachis hypogaea HOM05D001529 ORTHO05D007595 4.4e-12 73.6 43 74.4
arahy.Tifrunner.gnm1.ann1.9BA4YH Arachis hypogaea HOM05D001529 ORTHO05D007595 4.4e-12 73.6 43 74.4
PSO541G2760 Papaver somniferum HOM05D001529 ORTHO05D007595 4.4e-12 73.6 43 76.7
PSO675G8054 Papaver somniferum HOM05D001529 ORTHO05D007595 4.4e-12 73.6 43 76.7
Cpa.g.sc136.10 Carica papaya HOM05D001529 ORTHO05D007595 5.7e-12 73.2 43 74.4
ClCG02G002590 Citrullus lanatus HOM05D001529 ORTHO05D007595 5.7e-12 73.2 43 74.4
Sed0023062 Sechium edule HOM05D001529 ORTHO05D007595 9.8e-12 72.4 43 72.1
HPP92_022799 Vanilla planifolia HOM05D001529 ORTHO05D007595 9.8e-12 72.4 43 74.4
Aa31sc53G50 Aethionema arabicum HOM05D001529 ORTHO05D007595 1.7e-11 71.6 43 74.4
AL3G42430 Arabidopsis lyrata HOM05D001529 ORTHO05D007595 1.7e-11 71.6 43 74.4
AT2G04842 Arabidopsis thaliana HOM05D001529 ORTHO05D007595 1.7e-11 71.6 43 74.4
A03p44470 Brassica napus HOM05D001529 ORTHO05D007595 1.7e-11 71.6 43 74.4
C03p55280 Brassica napus HOM05D001529 ORTHO05D007595 1.7e-11 71.6 43 74.4
BolC3t17800H Brassica oleracea HOM05D001529 ORTHO05D007595 1.7e-11 71.6 43 74.4
BraA03t13580Z Brassica rapa HOM05D001529 ORTHO05D007595 1.7e-11 71.6 43 74.4
Carub.0003s2643 Capsella rubella HOM05D001529 ORTHO05D007595 1.7e-11 71.6 43 74.4
Thhalv10002438m.g Eutrema salsugineum HOM05D001529 ORTHO05D007595 1.7e-11 71.6 43 74.4
Sp3g23420 Schrenkiella parvula HOM05D001529 ORTHO05D007595 1.7e-11 71.6 43 74.4
THA.LOC104826614 Tarenaya hassleriana HOM05D001529 ORTHO05D007595 1.7e-11 71.6 43 69.8
CARHR102830 Cardamine hirsuta HOM05D001529 ORTHO05D007595 2.2e-11 71.2 43 72.1
MELO3C024216.2 Cucumis melo HOM05D001529 ORTHO05D007595 2.2e-11 71.2 43 72.1
CsaV3_7G002750 Cucumis sativus L. HOM05D001529 ORTHO05D007595 2.2e-11 71.2 43 72.1
MD00G1024100 Malus domestica HOM05D001529 ORTHO05D036607 2.2e-11 71.2 43 72.1
THA.LOC104815352 Tarenaya hassleriana HOM05D001529 ORTHO05D007595 2.2e-11 71.2 43 72.1
SEGI_09505 Sequoiadendron giganteum HOM05D001529 ORTHO05D007595 2.8e-11 70.9 43 72.1
Cre10.g421600 Chlamydomonas reinhardtii HOM05D001529 ORTHO05D007595 2.0e-09 64.7 43 62.8
Pp3c14_20630 Physcomitrium patens HOM05D001529 ORTHO05D007595 2.0e-09 64.7 43 62.8
Mapoly0096s0034 Marchantia polymorpha HOM05D001529 ORTHO05D007595 2.7e-09 64.3 43 65.1
Pp3c2_11130 Physcomitrium patens HOM05D001529 ORTHO05D007595 2.7e-09 64.3 43 62.8
CBR_g3851 Chara braunii HOM05D001529 ORTHO05D007595 3.5e-09 63.9 43 65.1
MD05G1333900 Malus domestica HOM05D001529 ORTHO05D007595 5.0e-08 60.1 33 78.8
MCO11G246 Micromonas commoda HOM05D001529 ORTHO05D007595 5.0e-08 60.1 43 58.1
PRCOL_00005026 Prasinoderma coloniale HOM05D001529 ORTHO05D007595 6.5e-08 59.7 43 58.1
SMO145G0032 Selaginella moellendorffii HOM05D001529 ORTHO05D007595 8.0e-06 52.8 39 53.8


User provided reference genes

Program Settings