Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 1.1e-259 899.4 452 100.0
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 1.2e-226 789.6 453 87.0
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 4.4e-216 754.6 451 81.6
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 7.5e-216 753.8 454 80.2
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 7.5e-216 753.8 454 80.2
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 2.2e-215 752.3 451 82.7
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 2.8e-215 751.9 454 81.5
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 7.0e-214 747.3 466 80.0
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 1.2e-213 746.5 451 82.0
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 2.0e-213 745.7 453 80.1
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 1.0e-212 743.4 455 80.2
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 8.6e-212 740.3 451 82.0
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 1.1e-211 740.0 451 80.5
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 1.5e-211 739.6 451 79.2
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 2.5e-211 738.8 454 78.9
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 4.2e-211 738.0 451 80.3
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 1.6e-210 736.1 453 78.8
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 2.8e-210 735.3 452 81.0
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 4.7e-210 734.6 456 80.9
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 1.4e-209 733.0 452 80.3
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 3.0e-209 731.9 455 80.4
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 4.0e-209 731.5 451 79.6
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 5.2e-209 731.1 465 79.4
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 1.2e-208 729.9 453 80.1
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 4.9e-207 724.5 451 78.7
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 2.4e-206 722.2 453 79.2
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 2.4e-206 722.2 453 76.8
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 3.1e-206 721.8 451 78.3
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 4.1e-206 721.5 450 78.4
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 4.1e-206 721.5 453 77.0
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 4.1e-206 721.5 453 77.3
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 4.1e-206 721.5 453 76.8
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 7.0e-206 720.7 451 79.4
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 2.7e-205 718.8 487 74.9
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 3.5e-205 718.4 451 79.2
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 3.5e-205 718.4 452 77.9
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 4.5e-205 718.0 456 77.2
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 4.5e-205 718.0 451 78.7
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 4.5e-205 718.0 456 79.2
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 5.9e-205 717.6 452 77.7
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 1.0e-204 716.8 454 77.5
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.0e-204 716.8 459 78.4
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 3.8e-204 714.9 451 78.3
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 5.0e-204 714.5 453 76.6
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 8.6e-204 713.8 458 78.4
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 8.6e-204 713.8 453 75.7
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 1.9e-203 712.6 455 78.0
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 1.2e-202 709.9 453 75.7
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 6.1e-202 707.6 453 76.2
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 8.0e-202 707.2 452 76.3
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 1.0e-201 706.8 451 76.9
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 1.8e-201 706.1 452 76.5
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 2.3e-201 705.7 451 75.8
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 3.0e-201 705.3 451 75.6
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 4.0e-201 704.9 450 75.1
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 4.0e-201 704.9 454 77.1
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 6.8e-201 704.1 454 77.3
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 8.9e-201 703.7 451 75.8
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 1.5e-200 703.0 451 77.4
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 5.7e-200 701.0 469 73.6
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 1.3e-199 699.9 484 73.6
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 1.1e-198 696.8 481 73.4
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 1.1e-198 696.8 448 75.0
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 1.8e-198 696.0 444 75.0
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 7.0e-198 694.1 451 75.6
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 2.7e-197 692.2 475 71.8
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 1.7e-196 689.5 451 73.6
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 8.0e-194 680.6 461 74.2
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 8.0e-194 680.6 414 81.9
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 2.9e-191 672.2 473 72.1
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 3.2e-190 668.7 488 69.5
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 7.8e-189 664.1 454 74.0
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 1.3e-188 663.3 451 74.7
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 1.8e-185 652.9 407 79.4
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 1.8e-185 652.9 467 70.2
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 3.1e-185 652.1 460 72.4
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 2.6e-184 649.0 451 73.2
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 1.3e-183 646.7 451 73.2
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 2.9e-183 645.6 441 73.5
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 3.7e-183 645.2 481 68.0
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 1.8e-177 626.3 493 66.9
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 8.9e-177 624.0 453 72.2
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 2.6e-176 622.5 555 61.4
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 3.4e-176 622.1 513 63.4
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 2.7e-173 612.5 403 76.2
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 1.5e-171 606.7 451 68.7
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 5.6e-171 604.7 514 63.0
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 1.6e-170 603.2 384 76.6
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 1.8e-169 599.7 398 73.6
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 9.9e-168 594.0 452 67.5
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 1.7e-167 593.2 450 68.7
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 3.5e-165 585.5 494 63.6
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 1.5e-163 580.1 355 81.7
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 2.2e-159 566.2 485 61.9
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 4.2e-158 562.0 340 81.2
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 2.1e-154 549.7 432 66.9
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 1.9e-150 536.6 325 79.7
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 3.1e-145 519.2 455 54.7
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 1.3e-138 497.3 455 53.0
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 4.1e-137 492.3 416 62.3
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 5.0e-135 485.3 296 81.4
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 1.5e-128 463.8 296 77.7
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 4.5e-128 462.2 505 51.7
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 1.8e-124 450.3 454 49.6
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 9.4e-118 427.9 342 67.5
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 1.4e-116 424.1 447 48.3
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 4.1e-113 412.5 445 46.3
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 1.0e-111 407.9 268 75.7
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 5.0e-103 379.0 230 83.5
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 6.1e-101 372.1 432 49.5
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 4.4e-99 365.9 276 67.8
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 4.2e-94 349.4 205 83.9
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 2.4e-81 307.0 258 64.3
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 3.9e-71 273.1 182 74.2
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 6.6e-71 272.3 282 53.9
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 9.5e-70 268.5 238 60.9
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 9.2e-65 251.9 224 54.9
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 2.7e-64 250.4 148 79.1
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 6.6e-63 245.7 174 70.7
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 2.8e-61 240.4 461 33.0
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 5.8e-59 232.6 325 45.8
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 1.3e-58 231.5 522 32.0
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 1.7e-58 231.1 458 31.7
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 7.3e-54 215.7 553 28.0
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 3.5e-48 196.8 130 73.8
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 5.1e-39 166.4 97 77.3
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 1.3e-34 151.8 111 73.9
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.3e-34 151.8 100 67.0
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.3e-34 151.8 100 67.0
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 8.4e-34 149.1 118 66.1
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 5.3e-28 129.8 96 60.4
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 3.9e-23 113.6 70 81.4
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 5.1e-23 113.2 58 93.1
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 1.6e-21 108.2 69 78.3
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.2e-21 107.8 69 78.3
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.4e-20 104.4 81 60.5
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 5.9e-19 99.8 186 39.2
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 1.9e-17 94.7 55 80.0
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 1.6e-16 91.7 64 67.2
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 2.3e-15 87.8 60 66.7
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.3e-14 83.6 58 63.8
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 5.7e-14 83.2 52 73.1
FvH4_5g20991 Fragaria vesca HOM05D005098 ORTHO05D031290 1.5e-11 75.1 103 44.7
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.6e-11 74.3 51 72.5
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 3.8e-10 70.5 69 56.5
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.0e-07 62.4 38 76.3
Glyma.13G152440 Glycine max HOM05D005098 ORTHO05D046693 5.1e-07 60.1 52 65.4


User provided reference genes

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