Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03656 Nelumbo nucifera HOM05D006314 ORTHO05D007970 7.8e-145 517.3 300 100.0
Aqoxy5G01372 Aquilegia oxysepala HOM05D006314 ORTHO05D007970 3.7e-86 322.4 261 75.1
Manes.14G141100 Manihot esculenta HOM05D006314 ORTHO05D007970 4.7e-81 305.4 241 74.7
CiPaw.09G086300 Carya illinoinensis HOM05D006314 ORTHO05D007970 6.1e-81 305.1 266 64.3
GSVIVG01012621001 Vitis vinifera HOM05D006314 ORTHO05D007970 3.0e-80 302.8 261 64.4
Potri.004G039400 Populus trichocarpa HOM05D006314 ORTHO05D007970 5.2e-80 302.0 245 71.8
CiPaw.09G085200 Carya illinoinensis HOM05D006314 ORTHO05D007970 2.6e-79 299.7 250 66.4
EL10Ac8g19905 Beta vulgaris HOM05D006314 ORTHO05D007970 7.5e-79 298.1 241 71.8
Cfa021643 Carpinus fangiana HOM05D006314 ORTHO05D007970 3.7e-78 295.8 297 63.6
ECA236G4636 Erigeron canadensis HOM05D006314 ORTHO05D007970 1.1e-77 294.3 233 71.7
Prupe.4G027100 Prunus persica HOM05D006314 ORTHO05D007970 3.1e-77 292.7 240 68.8
Ah.14g088200 Amaranthus hybridus HOM05D006314 ORTHO05D007970 5.3e-77 292.0 229 72.1
Hund21374 Selenicereus undatus HOM05D006314 ORTHO05D007970 5.3e-77 292.0 226 70.8
CANSAT56G1066 Cannabis sativa HOM05D006314 ORTHO05D007970 2.7e-76 289.7 240 77.5
Sabra04G0024200 Salix brachista HOM05D006314 ORTHO05D007970 2.7e-76 289.7 304 54.9
AL6G48810 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 8.5e-75 284.6 277 55.6
Solyc03g031560.4 Solanum lycopersicum HOM05D006314 ORTHO05D007970 1.5e-74 283.9 247 69.6
ATR0618G448 Amborella trichopoda HOM05D006314 ORTHO05D007970 2.5e-74 283.1 223 78.0
QL05p075316 Quercus lobata HOM05D006314 ORTHO05D007970 3.2e-74 282.7 299 57.9
Gorai.010G176200 Gossypium raimondii HOM05D006314 ORTHO05D007970 1.2e-73 280.8 256 61.3
SGA_v2.0_scaffold7G03887 Striga asiatica HOM05D006314 ORTHO05D007970 1.2e-73 280.8 233 68.7
Ciclev10018286m.g Citrus clementina HOM05D006314 ORTHO05D007970 2.7e-73 279.6 222 79.7
PGR031G0385 Punica granatum HOM05D006314 ORTHO05D007970 2.7e-73 279.6 297 65.7
SalBow8G4748 Salvia bowleyana HOM05D006314 ORTHO05D007970 3.6e-73 279.3 234 68.4
COL.COLO4_31719 Corchorus olitorius HOM05D006314 ORTHO05D007970 1.0e-72 277.7 259 62.5
CAN.G404.73 Capsicum annuum HOM05D006314 ORTHO05D007970 1.4e-72 277.3 241 65.6
AT4G05210 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 3.0e-72 276.2 270 63.3
AL7G32880 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 4.0e-72 275.8 230 70.4
Gohir.A06G145000 Gossypium hirsutum HOM05D006314 ORTHO05D007970 4.0e-72 275.8 256 56.2
A09p25520 Brassica napus HOM05D006314 ORTHO05D007970 6.8e-72 275.0 275 63.3
Lsat_1_v5_gn_7_17861 Lactuca sativa HOM05D006314 ORTHO05D007970 6.8e-72 275.0 294 60.5
BcaB01g01893 Brassica carinata HOM05D006314 ORTHO05D007970 8.8e-72 274.6 230 71.3
CDE05G2602 Ceratophyllum demersum HOM05D006314 ORTHO05D007970 1.2e-71 274.2 232 70.7
MD05G1340500 Malus domestica HOM05D006314 ORTHO05D007970 1.2e-71 274.2 238 67.2
BcaC04g21385 Brassica carinata HOM05D006314 ORTHO05D007970 2.0e-71 273.5 269 63.9
C09p32430 Brassica napus HOM05D006314 ORTHO05D007970 2.0e-71 273.5 269 63.9
BolC9t56088H Brassica oleracea HOM05D006314 ORTHO05D007970 2.0e-71 273.5 269 63.9
Carub.0007s2019 Capsella rubella HOM05D006314 ORTHO05D007970 2.6e-71 273.1 251 66.9
AT4G21220 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 4.4e-71 272.3 221 72.4
BraA09t38127Z Brassica rapa HOM05D006314 ORTHO05D007970 1.3e-70 270.8 269 63.6
HanXRQChr05g0130041 Helianthus annuus HOM05D006314 ORTHO05D007970 1.7e-70 270.4 253 64.4
Migut.M01276 Erythranthe guttata HOM05D006314 ORTHO05D007970 1.8e-69 266.9 244 65.2
Actinidia26953 Actinidia chinensis HOM05D006314 ORTHO05D007970 2.4e-69 266.5 169 79.3
SEGI_37493 Sequoiadendron giganteum HOM05D006314 ORTHO05D007970 9.1e-69 264.6 241 58.1
Actinidia05538 Actinidia chinensis HOM05D006314 ORTHO05D007970 1.2e-68 264.2 228 75.0
HPP92_009390 Vanilla planifolia HOM05D006314 ORTHO05D007970 1.2e-68 264.2 229 70.3
Haze_06726 Corylus avellana HOM05D006314 ORTHO05D007970 1.6e-68 263.8 358 45.5
HPP92_009395 Vanilla planifolia HOM05D006314 ORTHO05D007970 1.6e-68 263.8 229 72.5
PSO541G6217 Papaver somniferum HOM05D006314 ORTHO05D007970 1.0e-67 261.2 284 54.9
Duzib235G0913 Durio zibethinus HOM05D006314 ORTHO05D007970 2.2e-67 260.0 240 56.7
PSO675G3227 Papaver somniferum HOM05D006314 ORTHO05D007970 6.5e-67 258.5 284 54.6
CARHR227820 Cardamine hirsuta HOM05D006314 ORTHO05D007970 1.5e-66 257.3 248 69.8
CsaV3_6G049280 Cucumis sativus L. HOM05D006314 ORTHO05D007970 2.5e-66 256.5 255 60.4
FAN21G1433 Fragaria x ananassa HOM05D006314 ORTHO05D007970 1.6e-65 253.8 250 61.2
Eucgr.D00832 Eucalyptus grandis HOM05D006314 ORTHO05D007970 2.1e-65 253.4 292 61.6
Haze_06729 Corylus avellana HOM05D006314 ORTHO05D007970 3.6e-65 252.7 173 74.0
Sopen03g005440 Solanum pennellii HOM05D006314 ORTHO05D007970 1.0e-64 251.1 239 71.1
DCAR_004187 Daucus carota HOM05D006314 ORTHO05D007970 1.4e-64 250.8 243 66.7
Thhalv10025838m.g Eutrema salsugineum HOM05D006314 ORTHO05D007970 1.4e-64 250.8 225 69.3
FvH4_3g02730 Fragaria vesca HOM05D006314 ORTHO05D007970 1.4e-64 250.8 230 69.1
MBI02_g34312_MAGBIO Magnolia biondii HOM05D006314 ORTHO05D007970 1.4e-64 250.8 251 65.3
Oeu002711.1 Olea europaea HOM05D006314 ORTHO05D007970 5.2e-64 248.8 238 66.4
Cpa.g.sc81.24 Carica papaya HOM05D006314 ORTHO05D007970 8.8e-64 248.1 244 61.9
Aa31LG9G9230 Aethionema arabicum HOM05D006314 ORTHO05D007970 1.5e-63 247.3 245 64.1
Mapoly0013s0096 Marchantia polymorpha HOM05D006314 ORTHO05D007970 5.7e-63 245.4 234 62.4
RcHm_v2.0_Chr5g0004131 Rosa chinensis HOM05D006314 ORTHO05D007970 3.7e-62 242.7 230 66.5
Cc00_g17320 Coffea canephora HOM05D006314 ORTHO05D007970 1.6e-60 237.3 242 67.8
ClCG01G022220 Citrullus lanatus HOM05D006314 ORTHO05D007970 4.5e-60 235.7 238 67.6
Lj1A1224T36 Lonicera japonica HOM05D006314 ORTHO05D007970 4.5e-60 235.7 222 68.5
THA.LOC104812945 Tarenaya hassleriana HOM05D006314 ORTHO05D007970 4.5e-60 235.7 259 63.3
MELO3C007369.2 Cucumis melo HOM05D006314 ORTHO05D007970 7.7e-60 235.0 241 61.4
Lj1g0010466 Lotus japonicus HOM05D006314 ORTHO05D007970 7.7e-60 235.0 241 58.9
Rhsim13G0158200 Rhododendron simsii HOM05D006314 ORTHO05D007970 1.7e-59 233.8 274 56.9
FAN25G2977 Fragaria x ananassa HOM05D006314 ORTHO05D007970 3.8e-59 232.6 274 56.2
Glyma.01G240700 Glycine max HOM05D006314 ORTHO05D007970 3.8e-59 232.6 289 52.6
Gohir.D06G151200 Gossypium hirsutum HOM05D006314 ORTHO05D007970 2.5e-58 229.9 192 57.8
Medtr7g047630 Medicago truncatula HOM05D006314 ORTHO05D007970 1.2e-57 227.6 234 61.1
Medtr7g451810 Medicago truncatula HOM05D006314 ORTHO05D007970 1.2e-57 227.6 234 61.1
TPR.G10185 Trifolium pratense HOM05D006314 ORTHO05D007970 3.0e-56 223.0 234 61.1
Phvul.002G049200 Phaseolus vulgaris HOM05D006314 ORTHO05D007970 4.0e-56 222.6 234 59.4
Zm00001eb306890 Zea mays HOM05D006314 ORTHO05D007970 5.2e-56 222.2 231 68.8
AagrBONN_evm.TU.Sc2ySwM_228.2540 Anthoceros agrestis HOM05D006314 ORTHO05D007970 4.4e-55 219.2 260 58.5
Thecc.06G213300 Theobroma cacao HOM05D006314 ORTHO05D007970 7.5e-55 218.4 229 57.6
vmacro03713 Vaccinium macrocarpon HOM05D006314 ORTHO05D007970 9.8e-55 218.0 210 64.3
VMungo1215G0781 Vigna mungo HOM05D006314 ORTHO05D007970 9.8e-55 218.0 241 56.8
Lalb_Chr16g0376341 Lupinus albus HOM05D006314 ORTHO05D007970 4.1e-53 212.6 225 66.2
Dinv17838 Davidia involucrata HOM05D006314 ORTHO05D007970 5.4e-53 212.2 178 76.4
Sp6g03780 Schrenkiella parvula HOM05D006314 ORTHO05D007970 2.0e-52 210.3 247 61.9
Ca_07429_v3 Cicer arietinum L. HOM05D006314 ORTHO05D007970 5.9e-52 208.8 227 59.0
Nitab4.5_0004428g0040 Nicotiana tabacum HOM05D006314 ORTHO05D007970 1.7e-51 207.2 266 44.7
TWI38G0264 Tripterygium wilfordii HOM05D006314 ORTHO05D007970 1.1e-50 204.5 240 55.4
CBR_g20160 Chara braunii HOM05D006314 ORTHO05D007970 2.1e-49 200.3 222 62.2
AUR62012635 Chenopodium quinoa HOM05D006314 ORTHO05D007970 4.0e-48 196.1 248 53.6
Hma1.2p1_0729F.1_g209630 Hydrangea macrophylla HOM05D006314 ORTHO05D007970 2.6e-47 193.4 190 51.1
PGSC0003DMG400005049 Solanum tuberosum HOM05D006314 ORTHO05D007970 3.4e-47 193.0 185 69.7
Psat3g152680 Pisum sativum HOM05D006314 ORTHO05D007970 2.9e-46 189.9 197 65.0
Nn5g27983 Nelumbo nucifera HOM05D006314 ORTHO05D007970 3.7e-46 189.5 122 73.8
Pp3c4_25780 Physcomitrium patens HOM05D006314 ORTHO05D007970 2.4e-45 186.8 226 61.1
arahy.Tifrunner.gnm1.ann1.937J55 Arachis hypogaea HOM05D006314 ORTHO05D007970 4.1e-45 186.0 230 59.1
arahy.Tifrunner.gnm1.ann1.PEH28W Arachis hypogaea HOM05D006314 ORTHO05D007970 7.0e-45 185.3 244 56.6
AUR62022021 Chenopodium quinoa HOM05D006314 ORTHO05D007970 7.0e-45 185.3 243 51.4
Nitab4.5_0000900g0100 Nicotiana tabacum HOM05D006314 ORTHO05D007970 9.2e-45 184.9 292 42.1
Sc05g0008810 Simmondsia chinensis HOM05D006314 ORTHO05D007970 4.6e-44 182.6 245 51.0
TAR627G0699 Trochodendron aralioides HOM05D006314 ORTHO05D007970 7.8e-44 181.8 109 89.9
Glyma.11G002900 Glycine max HOM05D006314 ORTHO05D007970 6.6e-43 178.7 163 57.7
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 3.1e-40 169.9 154 57.8
CSS0045332 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 2.6e-39 166.8 127 73.2
PRCOL_00005452 Prasinoderma coloniale HOM05D006314 ORTHO05D007970 2.3e-35 153.7 228 53.1
Sed0025568 Sechium edule HOM05D006314 ORTHO05D007970 2.6e-31 140.2 243 49.4
SMO004G0010 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 9.9e-31 138.3 237 39.7
Peaxi162Scf00781g00047 Petunia axillaris HOM05D006314 ORTHO05D007970 9.2e-29 131.7 158 53.8
MSTRG.16127 Avicennia marina HOM05D006314 ORTHO05D007970 1.6e-20 104.4 113 44.2
CSS0018641 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 1.3e-19 101.3 113 72.6
SMO361G0013 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 1.9e-18 97.4 219 35.6
Os07g0134400 Oryza sativa ssp. japonica HOM05D006314 ORTHO05D007970 2.0e-15 87.4 113 63.7
FAN25G3594 Fragaria x ananassa HOM05D006314 ORTHO05D007970 1.9e-13 80.9 43 83.7
FvH4_3g02750 Fragaria vesca HOM05D006314 ORTHO05D007970 1.7e-06 57.8 43 67.4


User provided reference genes

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