Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 1.3e-120 436.4 226 100.0
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.8e-69 266.5 226 66.8
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 4.5e-68 261.9 227 65.6
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 7.6e-68 261.2 227 66.5
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 3.8e-67 258.8 227 65.2
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 8.4e-67 257.7 230 65.2
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 8.4e-67 257.7 230 65.2
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 3.2e-66 255.8 227 64.3
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 7.1e-66 254.6 226 61.5
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 1.2e-65 253.8 228 66.2
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 2.1e-65 253.1 226 62.8
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 2.7e-65 252.7 226 61.1
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 3.5e-65 252.3 226 62.4
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 6.0e-65 251.5 229 63.8
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 7.9e-65 251.1 227 63.0
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.0e-64 250.8 226 61.9
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 1.3e-64 250.4 230 60.9
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.8e-64 250.0 228 64.5
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.3e-64 249.6 226 62.8
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 3.0e-64 249.2 226 61.9
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.0e-64 249.2 226 61.9
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.0e-64 249.2 226 61.9
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 3.0e-64 249.2 226 62.8
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 5.1e-64 248.4 228 63.6
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 6.7e-64 248.1 226 61.1
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 8.7e-64 247.7 226 61.5
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 1.1e-63 247.3 217 65.4
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 1.5e-63 246.9 227 63.4
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.5e-63 246.9 226 61.5
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.5e-63 246.9 225 61.3
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.5e-63 246.1 229 62.0
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.3e-63 245.4 229 62.0
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 4.3e-63 245.4 227 62.6
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 5.6e-63 245.0 222 63.5
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 7.4e-63 244.6 226 61.5
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 2.1e-62 243.0 229 62.4
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 2.1e-62 243.0 230 60.4
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 2.8e-62 242.7 231 62.3
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 4.8e-62 241.9 224 62.9
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 8.1e-62 241.1 229 62.0
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.1e-61 240.7 228 61.0
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 1.4e-61 240.4 229 62.0
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 1.4e-61 240.4 231 64.1
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 1.4e-61 240.4 231 64.1
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 1.4e-61 240.4 228 60.5
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 1.8e-61 240.0 228 62.3
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 1.8e-61 240.0 225 63.1
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 1.8e-61 240.0 228 62.7
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 3.1e-61 239.2 227 61.7
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 3.1e-61 239.2 228 60.5
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 4.0e-61 238.8 227 60.8
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 5.3e-61 238.4 229 61.6
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 5.3e-61 238.4 225 59.1
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 9.0e-61 237.7 230 62.6
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 1.5e-60 236.9 229 61.1
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 1.5e-60 236.9 225 59.1
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 2.6e-60 236.1 229 61.1
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 2.6e-60 236.1 230 62.2
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 2.6e-60 236.1 230 62.2
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 2.6e-60 236.1 230 62.2
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 2.6e-60 236.1 226 58.4
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 2.6e-60 236.1 229 61.1
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 7.6e-60 234.6 243 57.6
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 7.6e-60 234.6 227 60.8
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.3e-59 233.8 225 62.7
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 1.7e-59 233.4 225 62.2
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.2e-59 233.0 225 62.7
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 2.2e-59 233.0 224 61.2
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 3.8e-59 232.3 229 60.3
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 3.8e-59 232.3 208 64.4
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 6.5e-59 231.5 227 59.9
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 8.4e-59 231.1 216 58.3
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 1.4e-58 230.3 225 58.2
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 1.9e-58 229.9 226 61.1
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 2.5e-58 229.6 227 57.7
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 4.2e-58 228.8 199 65.3
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 5.5e-58 228.4 226 60.6
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 5.5e-58 228.4 232 61.2
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 7.1e-58 228.0 232 60.8
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 9.3e-58 227.6 254 55.5
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 9.3e-58 227.6 225 61.8
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 9.3e-58 227.6 227 59.5
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.2e-57 227.3 227 57.3
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.6e-57 226.9 225 59.1
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.5e-57 225.7 226 58.0
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 3.5e-57 225.7 227 59.0
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 7.9e-57 224.6 225 58.7
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 7.9e-57 224.6 233 56.7
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 3.9e-56 222.2 225 59.6
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 6.7e-56 221.5 215 60.5
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 8.7e-56 221.1 240 57.9
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 8.7e-56 221.1 225 56.0
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 2.5e-55 219.5 208 61.5
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 9.6e-55 217.6 225 59.1
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 9.6e-55 217.6 228 55.7
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 2.1e-54 216.5 225 55.6
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 2.1e-54 216.5 224 57.1
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 4.8e-54 215.3 231 58.0
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 4.8e-54 215.3 224 56.2
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 6.3e-54 214.9 229 59.4
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 6.3e-54 214.9 228 55.7
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 1.8e-53 213.4 228 55.3
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 3.1e-53 212.6 226 54.4
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.1e-53 212.2 157 70.1
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 5.3e-53 211.8 196 63.3
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 5.3e-53 211.8 196 63.3
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 2.0e-52 209.9 227 60.4
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 2.6e-52 209.5 223 57.0
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.4e-52 209.1 218 57.3
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.0e-51 207.6 199 62.8
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 5.0e-51 205.3 231 56.7
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 1.4e-50 203.8 221 55.2
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 7.2e-50 201.4 225 56.9
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 7.2e-50 201.4 206 59.2
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 1.6e-49 200.3 244 51.6
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 4.6e-49 198.7 165 67.3
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 4.6e-49 198.7 231 55.0
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 6.1e-49 198.4 164 67.7
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 7.9e-49 198.0 152 70.4
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 7.9e-49 198.0 255 48.6
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 1.0e-48 197.6 162 67.3
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 1.8e-48 196.8 236 52.5
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 2.3e-48 196.4 164 67.7
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 3.0e-48 196.1 238 53.8
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.9e-47 193.4 227 52.0
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 4.3e-47 192.2 236 54.7
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 7.4e-47 191.4 217 53.9
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 2.2e-46 189.9 163 64.4
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 2.2e-46 189.9 224 50.9
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 8.2e-46 188.0 139 69.1
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.4e-45 187.2 226 51.8
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 2.4e-45 186.4 173 61.8
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 6.9e-45 184.9 224 49.6
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 1.5e-44 183.7 156 66.7
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 2.6e-44 183.0 156 66.0
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 5.9e-44 181.8 183 59.0
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.0e-43 181.0 202 53.0
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 1.7e-43 180.3 170 58.8
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 2.9e-43 179.5 184 58.7
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 2.9e-43 179.5 165 60.6
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 5.0e-43 178.7 184 58.7
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 6.5e-43 178.3 184 58.7
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 4.2e-42 175.6 239 50.2
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.5e-36 157.1 162 53.1
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.4e-34 150.6 138 58.0
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.2e-34 149.4 175 49.1
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 7.2e-34 148.3 95 82.1
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.2e-33 147.5 154 59.1
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 6.1e-33 145.2 227 45.4
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 2.3e-32 143.3 162 51.2
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.5e-31 140.6 232 43.5
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 3.3e-31 139.4 227 44.1
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 3.3e-31 139.4 162 48.8
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 4.4e-31 139.0 228 43.0
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.3e-30 137.5 88 80.7
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.8e-30 136.3 112 63.4
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.1e-29 134.4 177 46.3
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 1.1e-29 134.4 123 63.4
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 1.8e-29 133.7 163 47.2
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 5.3e-29 132.1 160 49.4
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 1.2e-28 131.0 184 44.0
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.7e-22 110.5 128 56.2
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 2.8e-22 109.8 128 56.2
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.9e-19 99.8 107 56.1
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 3.2e-18 96.3 69 69.6
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.2e-17 94.4 55 81.8
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 2.1e-17 93.6 52 84.6
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 2.7e-17 93.2 67 73.1
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 4.7e-17 92.4 106 53.8
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 6.1e-17 92.0 67 71.6
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.8e-16 90.5 106 52.8
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 1.3e-14 84.3 139 43.2
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 6.5e-11 72.0 163 31.9
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 3.6e-09 66.2 85 48.2
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 1.8e-08 63.9 38 78.9
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 8.8e-08 61.6 34 88.2
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 1.2e-07 61.2 37 75.7
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 2.0e-07 60.5 37 75.7
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 1.3e-06 57.8 37 73.0
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 3.7e-06 56.2 80 40.0


User provided reference genes

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