Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 0.0e+00 1634.8 816 100.0
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 7.0e-305 1050.4 853 65.9
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 6.6e-279 964.1 802 64.7
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.6e-238 828.2 851 54.5
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.8e-234 815.5 783 56.3
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 9.3e-217 757.7 851 51.0
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 8.8e-207 724.5 827 49.1
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 1.7e-205 720.3 845 50.1
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 4.2e-201 705.7 844 49.4
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 6.1e-200 701.8 812 50.6
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 3.1e-188 662.9 848 46.5
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 5.0e-186 655.6 857 46.4
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 4.1e-180 636.0 837 45.5
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.7e-179 633.3 792 46.0
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 8.0e-176 621.7 828 44.7
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 1.4e-172 610.9 846 43.5
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 4.1e-172 609.4 828 43.5
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 5.4e-172 609.0 828 43.7
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 3.5e-171 606.3 842 44.1
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.6e-168 597.4 828 43.2
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 2.3e-167 593.6 795 44.8
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 5.2e-167 592.4 827 43.3
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 8.9e-167 591.7 839 43.0
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 4.4e-166 589.3 850 43.2
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 8.6e-162 575.1 931 39.8
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.8e-160 570.1 824 43.0
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 2.0e-158 563.9 821 41.0
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 3.4e-158 563.1 839 41.2
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 9.2e-156 555.1 858 42.1
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 2.7e-155 553.5 821 40.7
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 2.3e-154 550.4 871 41.4
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 8.6e-154 548.5 818 42.4
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.1e-153 548.1 819 42.1
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 7.3e-153 545.4 834 39.7
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 9.5e-153 545.0 809 41.4
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 1.6e-152 544.3 971 37.5
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.8e-152 543.5 914 38.7
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 6.2e-152 542.3 839 42.1
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 8.1e-152 542.0 837 39.8
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 4.0e-151 539.7 1000 36.6
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 3.7e-149 533.1 796 43.0
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 5.1e-146 522.7 827 39.1
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.9e-145 520.8 848 38.3
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.5e-145 520.4 834 39.0
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 8.1e-144 515.4 1039 35.4
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 4.0e-143 513.1 838 38.8
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 4.0e-143 513.1 828 40.1
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 5.2e-143 512.7 844 37.9
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 2.6e-142 510.4 841 39.4
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 4.4e-142 509.6 864 38.3
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 4.4e-142 509.6 834 38.4
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 9.9e-142 508.4 833 39.3
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 2.2e-141 507.3 946 37.9
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 6.4e-141 505.8 767 42.2
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.4e-140 504.6 969 36.5
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.9e-140 504.2 816 39.8
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 5.4e-140 502.7 824 39.2
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 2.7e-139 500.4 864 37.3
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 3.5e-139 500.0 841 38.0
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 4.6e-139 499.6 789 39.0
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 6.0e-139 499.2 838 38.5
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 1.7e-138 497.7 803 38.6
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 3.0e-138 496.9 838 38.5
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 3.9e-138 496.5 802 38.8
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 3.3e-137 493.4 822 38.4
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 3.3e-137 493.4 831 39.1
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 1.2e-136 491.5 832 38.1
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 2.1e-136 490.7 806 37.2
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 2.8e-136 490.3 837 38.2
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 8.1e-136 488.8 861 36.6
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 5.8e-134 482.6 850 37.1
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 1.7e-133 481.1 815 38.3
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 4.9e-133 479.6 834 37.9
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 3.2e-132 476.9 827 37.8
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 4.6e-131 473.0 557 47.4
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 9.6e-129 465.3 872 37.0
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 4.0e-127 459.9 663 40.4
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 1.2e-126 458.4 812 37.3
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 2.0e-126 457.6 825 36.7
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 9.9e-126 455.3 818 36.2
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 2.7e-123 447.2 829 37.8
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 7.9e-123 445.7 909 35.1
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 3.7e-120 436.8 805 35.5
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.1e-119 435.3 808 34.7
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.4e-118 430.3 803 35.4
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 1.1e-116 425.2 735 40.1
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 3.2e-116 423.7 816 35.3
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 1.8e-114 417.9 849 35.0
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 8.2e-112 409.1 818 35.6
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.1e-111 408.7 843 35.6
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.4e-111 407.5 864 34.7
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.5e-110 404.8 722 38.6
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 1.1e-108 398.7 783 35.8
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.4e-108 398.3 857 33.5
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.8e-104 384.0 816 32.7
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 2.8e-104 384.0 798 32.7
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 3.7e-104 383.6 734 37.7
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.7e-101 374.8 801 33.3
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 4.2e-100 370.2 791 35.3
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 9.4e-100 369.0 553 41.6
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 3.6e-99 367.1 827 32.3
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 4.1e-95 353.6 492 42.9
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 6.1e-91 339.7 471 45.6
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 2.0e-89 334.7 790 33.0
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.1e-84 318.9 562 36.1
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 1.6e-83 315.1 805 30.3
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 2.0e-81 308.1 604 35.6
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.5e-76 292.0 514 38.9
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 3.2e-76 290.8 518 37.3
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 5.2e-74 283.5 485 37.7
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 8.8e-74 282.7 456 41.4
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 2.6e-73 281.2 538 36.1
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 1.1e-71 275.8 516 33.9
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.4e-71 275.4 457 37.6
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 2.4e-71 274.6 440 41.1
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 3.1e-71 274.2 457 37.9
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 9.1e-71 272.7 463 40.0
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.7e-70 271.2 441 38.5
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 7.7e-70 269.6 466 38.2
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.2e-69 268.1 442 38.0
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.8e-69 267.3 465 38.1
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 6.5e-69 266.5 466 38.2
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 6.5e-69 266.5 454 40.1
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 8.5e-69 266.2 495 37.6
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 8.5e-69 266.2 495 37.6
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.2e-68 264.2 518 34.6
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 7.2e-68 263.1 520 36.3
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 7.2e-68 263.1 519 36.2
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 7.2e-68 263.1 520 36.3
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 7.2e-68 263.1 787 28.7
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.6e-67 261.9 489 37.6
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 2.1e-67 261.5 505 36.4
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 3.6e-67 260.8 827 27.6
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 6.8e-66 256.5 446 38.3
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 1.5e-65 255.4 437 38.0
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 3.4e-65 254.2 442 37.3
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 7.0e-63 246.5 453 37.5
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 4.0e-58 230.7 353 39.1
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 4.4e-57 227.3 281 51.6
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 8.3e-56 223.0 532 30.1
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 3.3e-52 211.1 385 39.7
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.1e-50 204.5 784 27.8
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.7e-48 197.6 468 30.8
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 8.3e-48 196.4 417 36.5
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 4.1e-47 194.1 414 36.5
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 4.4e-41 174.1 814 24.0
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 1.1e-36 159.5 267 41.6
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 7.3e-36 156.8 100 68.0
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 3.6e-35 154.5 154 45.5
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 4.6e-30 137.5 103 58.3
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 4.3e-28 131.0 716 22.9
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 8.1e-27 126.7 130 52.3
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 8.1e-27 126.7 90 67.8
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.9e-23 115.5 159 37.7
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.5e-22 111.3 190 41.1
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 1.9e-15 89.0 70 75.7
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.1e-14 85.5 72 45.8
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.1e-14 85.5 69 52.2
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 1.7e-13 82.4 82 52.4
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.4e-10 72.0 71 36.6
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-09 67.8 106 34.9
Nn7g37184 Nelumbo nucifera HOM05D007667 ORTHO05D001109 7.6e-09 67.0 37 78.4
Nn1g05401 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.7e-08 65.9 37 86.5
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 1.6e-06 59.3 62 37.1
AagrBONN_evm.TU.Sc2ySwM_228.4205 Anthoceros agrestis HOM05D000465 ORTHO05D000301 2.1e-06 58.9 76 40.8
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 2.1e-06 58.9 51 56.9
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 2.1e-06 58.9 51 56.9
AagrBONN_evm.TU.Sc2ySwM_228.5868 Anthoceros agrestis HOM05D000465 ORTHO05D000301 2.7e-06 58.5 76 40.8
Pp3c1_860 Physcomitrium patens HOM05D003353 ORTHO05D003751 4.6e-06 57.8 95 33.7
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 6.0e-06 57.4 62 40.3
AagrBONN_evm.TU.Sc2ySwM_228.3868 Anthoceros agrestis HOM05D000465 ORTHO05D000301 7.9e-06 57.0 62 46.8


User provided reference genes

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