Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00005 Nelumbo nucifera HOM05D005653 ORTHO05D007013 4.9e-27 123.6 59 100.0
Nn1g02921 Nelumbo nucifera HOM05D005653 ORTHO05D007013 4.9e-27 123.6 59 100.0
Nn4g22260 Nelumbo nucifera HOM05D005653 ORTHO05D007013 3.2e-26 120.9 58 98.3
Potri.003G168800 Populus trichocarpa HOM05D005653 ORTHO05D007013 6.0e-25 116.7 58 93.1
Sabra03G0123700 Salix brachista HOM05D005653 ORTHO05D007013 6.0e-25 116.7 58 93.1
Haze_12446 Corylus avellana HOM05D005653 ORTHO05D007013 2.3e-24 114.8 59 91.5
PSO017G4941 Papaver somniferum HOM05D005653 ORTHO05D007013 6.7e-24 113.2 58 89.7
Cfa009387 Carpinus fangiana HOM05D005653 ORTHO05D007013 8.7e-24 112.8 58 91.4
MBI11_g05337_MAGBIO Magnolia biondii HOM05D005653 ORTHO05D007013 8.7e-24 112.8 58 87.9
TAR374G1158 Trochodendron aralioides HOM05D005653 ORTHO05D007013 8.7e-24 112.8 58 87.9
CSS0037525 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 3.3e-23 110.9 58 87.9
CSS0048785 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 3.3e-23 110.9 58 87.9
Dinv17587 Davidia involucrata HOM05D005653 ORTHO05D007013 3.3e-23 110.9 58 89.7
PSO478G2696 Papaver somniferum HOM05D005653 ORTHO05D007013 3.3e-23 110.9 58 87.9
Sabra01G0042500 Salix brachista HOM05D005653 ORTHO05D007013 3.3e-23 110.9 58 87.9
Cc11_g17180 Coffea canephora HOM05D005653 ORTHO05D007013 4.3e-23 110.5 58 87.9
RcHm_v2.0_Chr4g0429841 Rosa chinensis HOM05D005653 ORTHO05D007013 4.3e-23 110.5 58 84.5
QL03p051746 Quercus lobata HOM05D005653 ORTHO05D007013 5.7e-23 110.2 58 87.9
CiPaw.05G107200 Carya illinoinensis HOM05D005653 ORTHO05D007013 7.4e-23 109.8 58 86.2
Manes.12G008600 Manihot esculenta HOM05D005653 ORTHO05D007013 9.7e-23 109.4 58 86.2
Prupe.1G222900 Prunus persica HOM05D005653 ORTHO05D007013 1.3e-22 109.0 58 84.5
SalBow2G0115 Salvia bowleyana HOM05D005653 ORTHO05D007013 1.3e-22 109.0 58 81.0
DCAR_024662 Daucus carota HOM05D005653 ORTHO05D007013 1.6e-22 108.6 58 82.8
Migut.K01002 Erythranthe guttata HOM05D005653 ORTHO05D007013 1.6e-22 108.6 58 81.0
FvH4_4g23470 Fragaria vesca HOM05D005653 ORTHO05D007013 1.6e-22 108.6 58 82.8
FAN07G0042 Fragaria x ananassa HOM05D005653 ORTHO05D007013 1.6e-22 108.6 58 82.8
FAN12G1333 Fragaria x ananassa HOM05D005653 ORTHO05D007013 1.6e-22 108.6 58 82.8
MD13G1122300 Malus domestica HOM05D005653 ORTHO05D007013 1.6e-22 108.6 58 84.5
GSVIVG01010526001 Vitis vinifera HOM05D005653 ORTHO05D007013 1.6e-22 108.6 58 82.8
Lj3A1072T24 Lonicera japonica HOM05D005653 ORTHO05D007013 2.8e-22 107.8 58 86.2
CANSAT01G0083 Cannabis sativa HOM05D005653 ORTHO05D007013 3.7e-22 107.5 58 84.5
Medtr7g022310 Medicago truncatula HOM05D005653 ORTHO05D007013 3.7e-22 107.5 58 82.8
Aqoxy5G03294 Aquilegia oxysepala HOM05D005653 ORTHO05D007013 4.8e-22 107.1 58 81.0
Eucgr.B03521 Eucalyptus grandis HOM05D005653 ORTHO05D007013 4.8e-22 107.1 58 81.0
vmacro16096 Vaccinium macrocarpon HOM05D005653 ORTHO05D007013 4.8e-22 107.1 58 82.8
AUR62005648 Chenopodium quinoa HOM05D005653 ORTHO05D007013 6.3e-22 106.7 58 77.6
Ciclev10031168m.g Citrus clementina HOM05D005653 ORTHO05D007013 6.3e-22 106.7 58 86.2
HanXRQChr08g0209891 Helianthus annuus HOM05D005653 ORTHO05D007013 6.3e-22 106.7 58 81.0
Lalb_Chr10g0092041 Lupinus albus HOM05D005653 ORTHO05D007013 6.3e-22 106.7 58 84.5
PGSC0003DMG400019810 Solanum tuberosum HOM05D005653 ORTHO05D007013 8.2e-22 106.3 58 81.0
Peaxi162Scf00128g01533 Petunia axillaris HOM05D005653 ORTHO05D007013 1.1e-21 105.9 58 79.3
Sopen05g011500 Solanum pennellii HOM05D005653 ORTHO05D007013 1.1e-21 105.9 58 79.3
TWI18G0855 Tripterygium wilfordii HOM05D005653 ORTHO05D007013 1.1e-21 105.9 58 79.3
HanXRQChr08g0209781 Helianthus annuus HOM05D005653 ORTHO05D007013 1.4e-21 105.5 58 81.0
Lsat_1_v5_gn_8_147520 Lactuca sativa HOM05D005653 ORTHO05D007013 1.4e-21 105.5 58 77.6
Rhsim12G0094700 Rhododendron simsii HOM05D005653 ORTHO05D007013 1.4e-21 105.5 58 82.8
CDE05G3552 Ceratophyllum demersum HOM05D005653 ORTHO05D007013 1.8e-21 105.1 58 77.6
Duzib268G1459 Durio zibethinus HOM05D005653 ORTHO05D007013 1.8e-21 105.1 58 84.5
Actinidia39799 Actinidia chinensis HOM05D005653 ORTHO05D007013 2.4e-21 104.8 58 81.0
CAN.G789.3 Capsicum annuum HOM05D005653 ORTHO05D007013 2.4e-21 104.8 58 77.6
Sed0008245 Sechium edule HOM05D005653 ORTHO05D007013 2.4e-21 104.8 58 79.3
Solyc05g015860.4 Solanum lycopersicum HOM05D005653 ORTHO05D007013 2.4e-21 104.8 58 77.6
Gohir.A01G153900 Gossypium hirsutum HOM05D005653 ORTHO05D007013 3.1e-21 104.4 58 84.5
Gohir.D01G100300 Gossypium hirsutum HOM05D005653 ORTHO05D007013 3.1e-21 104.4 58 84.5
Gorai.002G181300 Gossypium raimondii HOM05D005653 ORTHO05D007013 3.1e-21 104.4 58 84.5
Psat3g188000 Pisum sativum HOM05D005653 ORTHO05D007013 3.1e-21 104.4 58 82.8
Atru.BG.292.p Acer truncatum HOM05D005653 ORTHO05D007013 4.1e-21 104.0 58 82.8
Ca_07130_v3 Cicer arietinum L. HOM05D005653 ORTHO05D007013 4.1e-21 104.0 58 82.8
Os01g0100900 Oryza sativa ssp. japonica HOM05D005653 ORTHO05D007013 4.1e-21 104.0 58 77.6
Thecc.02G202100 Theobroma cacao HOM05D005653 ORTHO05D007013 4.1e-21 104.0 58 84.5
arahy.Tifrunner.gnm1.ann1.8E8WMD Arachis hypogaea HOM05D005653 ORTHO05D007013 5.3e-21 103.6 58 77.6
arahy.Tifrunner.gnm1.ann1.K5AHSV Arachis hypogaea HOM05D005653 ORTHO05D007013 5.3e-21 103.6 58 77.6
MELO3C022321.2 Cucumis melo HOM05D005653 ORTHO05D007013 5.3e-21 103.6 58 79.3
CsaV3_6G008140 Cucumis sativus L. HOM05D005653 ORTHO05D007013 5.3e-21 103.6 58 79.3
Nitab4.5_0000340g0070 Nicotiana tabacum HOM05D005653 ORTHO05D007013 6.9e-21 103.2 58 77.6
Lj1g0002640 Lotus japonicus HOM05D005653 ORTHO05D007013 9.0e-21 102.8 58 81.0
Hund06105 Selenicereus undatus HOM05D005653 ORTHO05D007013 9.0e-21 102.8 58 77.6
SEGI_37890 Sequoiadendron giganteum HOM05D005653 ORTHO05D007013 9.0e-21 102.8 58 74.1
unitig_26.g10407 Utricularia gibba HOM05D005653 ORTHO05D007013 9.0e-21 102.8 58 79.3
ClCG06G002070 Citrullus lanatus HOM05D005653 ORTHO05D007013 1.2e-20 102.4 58 75.9
HPP92_006272 Vanilla planifolia HOM05D005653 ORTHO05D007013 1.2e-20 102.4 58 75.9
THA.LOC104820527 Tarenaya hassleriana HOM05D005653 ORTHO05D007013 1.5e-20 102.1 58 74.1
AUR62028902 Chenopodium quinoa HOM05D005653 ORTHO05D007013 2.0e-20 101.7 58 77.6
COL.COLO4_05009 Corchorus olitorius HOM05D005653 ORTHO05D007013 2.0e-20 101.7 58 81.0
Glyma.02G097200 Glycine max HOM05D005653 ORTHO05D007013 2.0e-20 101.7 58 79.3
Zm00001eb334070 Zea mays HOM05D005653 ORTHO05D007013 2.0e-20 101.7 58 77.6
Ah.03g135980 Amaranthus hybridus HOM05D005653 ORTHO05D007013 2.6e-20 101.3 58 77.6
ATR0561G080 Amborella trichopoda HOM05D005653 ORTHO05D007013 2.6e-20 101.3 58 77.6
AL1G41470 Arabidopsis lyrata HOM05D005653 ORTHO05D007013 2.6e-20 101.3 58 75.9
AT1G27980 Arabidopsis thaliana HOM05D005653 ORTHO05D007013 2.6e-20 101.3 58 75.9
Carub.0001s2643 Capsella rubella HOM05D005653 ORTHO05D007013 2.6e-20 101.3 58 75.9
ECA233G0831 Erigeron canadensis HOM05D005653 ORTHO05D007013 2.6e-20 101.3 58 77.6
Glyma.18G284300 Glycine max HOM05D005653 ORTHO05D007013 2.6e-20 101.3 58 77.6
PGR102G3026 Punica granatum HOM05D005653 ORTHO05D007013 3.4e-20 100.9 58 72.4
Thhalv10009378m.g Eutrema salsugineum HOM05D005653 ORTHO05D007013 4.5e-20 100.5 58 72.4
CARHR027410 Cardamine hirsuta HOM05D005653 ORTHO05D007013 5.9e-20 100.1 58 72.4
Phvul.008G017200 Phaseolus vulgaris HOM05D005653 ORTHO05D007013 5.9e-20 100.1 58 77.6
VMungo1383G3612 Vigna mungo HOM05D005653 ORTHO05D007013 7.7e-20 99.8 58 77.6
A08p25960 Brassica napus HOM05D005653 ORTHO05D007013 1.0e-19 99.4 58 72.4
C03p74690 Brassica napus HOM05D005653 ORTHO05D007013 1.0e-19 99.4 58 72.4
BraA08t34547Z Brassica rapa HOM05D005653 ORTHO05D007013 1.0e-19 99.4 58 72.4
BolC3t19717H Brassica oleracea HOM05D005653 ORTHO05D007013 1.7e-19 98.6 58 72.4
Sp1g24170 Schrenkiella parvula HOM05D005653 ORTHO05D007013 1.7e-19 98.6 58 74.1
Aa31sc146G110 Aethionema arabicum HOM05D005653 ORTHO05D007013 3.8e-19 97.4 58 72.4
SGA_v2.0_scaffold46G17390 Striga asiatica HOM05D005653 ORTHO05D007013 5.0e-19 97.1 69 69.6
EL10Ac6g13536 Beta vulgaris HOM05D005653 ORTHO05D007013 6.1e-17 90.1 48 83.3
SMO117G0322 Selaginella moellendorffii HOM05D005653 ORTHO05D007013 1.4e-16 89.0 58 65.5
Mapoly0064s0066 Marchantia polymorpha HOM05D005653 ORTHO05D007013 6.7e-16 86.7 57 63.2
SHI17985 Sapria himalayana HOM05D005653 ORTHO05D007013 2.8e-14 81.3 48 72.9
MELO3C032670.2 Cucumis melo HOM05D011747 ORTHO05D007013 6.9e-13 76.6 48 72.9
MELO3C031393.2 Cucumis melo HOM05D005653 ORTHO05D005467 2.0e-12 75.1 47 72.3
Pp3c25_6390 Physcomitrium patens HOM05D005653 ORTHO05D007013 1.7e-11 72.0 58 48.3
CBR_g49954 Chara braunii HOM05D005653 ORTHO05D007013 5.5e-10 67.0 57 50.9
PRCOL_00004852 Prasinoderma coloniale HOM05D005653 ORTHO05D007013 5.5e-10 67.0 61 50.8
Potri.001G059001 Populus trichocarpa HOM05D005653 ORTHO05D007013 2.7e-09 64.7 34 82.4
Cfa025335 Carpinus fangiana HOM05D005653 ORTHO05D007013 2.0e-07 58.5 58 44.8
Actinidia35048 Actinidia chinensis HOM05D000945 ORTHO05D056219 2.8e-06 54.7 50 62.0
MCO01G158 Micromonas commoda HOM05D005653 ORTHO05D007013 4.8e-06 53.9 56 46.4


User provided reference genes

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