Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 0.0e+00 2441.4 1228 100.0
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 0.0e+00 1269.6 1203 59.5
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 2.0e-287 993.0 1204 50.3
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 3.4e-287 992.3 1217 50.0
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.2e-204 718.0 1228 40.2
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 4.0e-187 659.8 1231 39.3
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 1.6e-180 637.9 1182 37.5
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 1.0e-174 618.6 1178 37.2
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 2.3e-174 617.5 1176 37.0
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 7.6e-170 602.4 1180 37.1
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 8.4e-169 599.0 1188 36.9
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.6e-167 594.7 1185 37.0
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.7e-167 594.0 1182 37.1
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.1e-160 572.0 1187 35.5
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.2e-159 568.5 1197 35.3
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 2.1e-159 567.8 1187 35.3
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 3.5e-159 567.0 1181 35.2
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.1e-155 555.4 1183 34.8
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 1.4e-155 555.1 1188 36.3
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 1.2e-154 552.0 1186 35.7
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 3.8e-153 547.0 1202 35.1
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 5.1e-150 536.6 1182 36.2
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 8.7e-150 535.8 1158 35.5
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 5.3e-147 526.6 1145 34.7
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 1.4e-144 518.5 1202 34.0
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 7.9e-143 512.7 1185 34.6
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 3.7e-140 503.8 1186 34.4
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 3.4e-138 497.3 1183 33.4
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.4e-136 491.9 1175 33.0
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 9.3e-136 489.2 1179 33.9
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 5.7e-133 479.9 1183 33.7
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 2.0e-130 471.5 1142 32.7
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 6.5e-129 466.5 1151 32.3
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 1.0e-126 459.1 1184 32.8
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.5e-125 455.3 1180 31.9
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 5.3e-123 446.8 1184 31.5
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 4.5e-122 443.7 1168 31.6
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 2.5e-120 438.0 1180 31.6
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 1.4e-118 432.2 1188 31.2
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.8e-118 431.8 1194 31.7
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.8e-118 431.8 1186 31.7
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 1.5e-117 428.7 1193 31.6
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 1.5e-117 428.7 1187 31.8
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 2.0e-117 428.3 1186 32.0
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 2.0e-117 428.3 1175 31.4
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 1.3e-116 425.6 1193 31.6
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 2.2e-116 424.9 1150 31.3
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.4e-115 422.2 1173 31.0
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 5.3e-115 420.2 1184 30.9
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 3.8e-113 414.1 1148 31.9
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.2e-112 410.6 1177 30.8
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 1.2e-111 409.1 1178 31.4
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.6e-111 407.5 1205 30.7
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 2.3e-110 404.8 1191 30.7
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 4.8e-108 397.1 1136 31.2
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 4.8e-108 397.1 1155 31.0
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 1.6e-106 392.1 1184 29.7
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 3.8e-105 387.5 905 34.8
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 3.6e-103 380.9 1174 29.9
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 3.0e-102 377.9 1179 29.6
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 2.0e-101 375.2 1169 30.4
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 2.6e-101 374.8 571 41.7
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 3.1e-99 367.9 1147 29.6
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.2e-96 357.8 925 31.9
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 7.2e-96 356.7 1192 30.9
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.1e-95 355.1 1183 28.9
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 4.7e-95 354.0 1185 28.4
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 2.0e-93 348.6 1179 28.6
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 5.7e-93 347.1 1172 29.0
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 7.5e-93 346.7 1184 28.2
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 8.6e-89 333.2 1178 28.7
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.5e-88 332.4 1172 28.5
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 1.8e-86 325.5 1139 29.1
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.0e-86 324.7 1171 28.8
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.5e-85 322.4 1207 27.6
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 8.3e-84 316.6 935 31.0
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.6e-82 312.4 1180 26.9
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 2.2e-76 292.0 791 32.4
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 5.4e-75 287.3 1199 27.5
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 2.1e-71 275.4 765 31.2
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.4e-70 272.7 1166 27.1
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 8.9e-70 270.0 814 31.2
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 2.6e-69 268.5 1153 26.3
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 4.4e-69 267.7 889 29.6
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 9.2e-67 260.0 733 33.6
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 4.3e-64 251.1 981 27.9
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 9.5e-64 250.0 765 28.6
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 3.4e-61 241.5 788 28.2
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 4.9e-60 237.7 776 28.4
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 2.1e-58 232.3 882 27.4
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 2.1e-58 232.3 776 28.2
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 3.5e-58 231.5 882 27.2
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 4.6e-58 231.1 882 27.2
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 8.6e-57 226.9 435 36.1
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 1.8e-54 219.2 234 52.6
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.4e-46 192.2 588 31.1
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.0e-46 191.4 372 34.4
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 1.5e-45 189.5 550 31.1
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 4.4e-45 188.0 394 33.5
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 3.9e-41 174.9 690 27.5
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 8.7e-41 173.7 839 27.3
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.5e-40 172.9 456 33.8
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 5.6e-40 171.0 172 50.6
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 1.6e-39 169.5 1054 23.4
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 1.8e-38 166.0 346 30.3
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 8.4e-36 157.1 505 28.5
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 1.9e-35 156.0 831 26.8
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 2.7e-34 152.1 383 30.0
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.0e-34 151.0 552 28.4
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 1.3e-33 149.8 432 27.8
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 1.9e-32 146.0 147 51.7
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.3e-32 144.8 411 32.8
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 4.3e-32 144.8 161 48.4
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 7.4e-32 144.1 148 50.7
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.8e-31 142.1 156 50.0
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 4.0e-30 138.3 161 49.7
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 4.5e-29 134.8 138 47.8
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.3e-28 133.3 1179 23.0
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.1e-27 130.2 820 25.0
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 9.3e-27 127.1 832 24.8
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 9.3e-27 127.1 817 26.4
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 2.1e-26 125.9 157 42.7
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.0e-25 123.6 294 31.0
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 1.1e-24 120.2 1111 23.8
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 7.4e-24 117.5 141 45.4
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 4.8e-23 114.8 113 50.4
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 4.8e-23 114.8 129 45.0
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 6.2e-23 114.4 336 27.1
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 3.1e-22 112.1 130 46.9
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 3.1e-22 112.1 329 27.4
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 5.8e-21 107.8 351 26.5
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 1.7e-20 106.3 823 25.4
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 8.4e-20 104.0 92 57.6
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 1.6e-18 99.8 477 27.9
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 3.9e-17 95.1 798 22.2
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 3.7e-15 88.6 129 40.3
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 1.5e-13 83.2 63 60.3
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 1.0e-12 80.5 486 26.5
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 7.9e-10 70.9 85 44.7
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 1.1e-08 67.0 60 51.7
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.5e-08 66.6 82 41.5
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 4.8e-07 61.6 81 39.5
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 5.3e-06 58.2 70 47.1


User provided reference genes

Program Settings