Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02419 Nelumbo nucifera HOM05D000527 ORTHO05D018152 5.8e-22 106.7 55 100.0
Nn2g14617 Nelumbo nucifera HOM05D000527 ORTHO05D018152 6.9e-15 83.2 55 83.6
Nn1g06759 Nelumbo nucifera HOM05D000527 ORTHO05D018152 1.7e-13 78.6 47 89.4
Nn4g22662 Nelumbo nucifera HOM05D000527 ORTHO05D000559 2.9e-13 77.8 52 75.0
Oeu057058.1 Olea europaea HOM05D000527 ORTHO05D000559 7.9e-11 69.7 52 71.2
Glyma.06G179200 Glycine max HOM05D000527 ORTHO05D000559 1.0e-10 69.3 53 67.9
PSO832G3060 Papaver somniferum HOM05D000527 ORTHO05D000559 2.3e-10 68.2 52 65.4
Atru.chr6.2360 Acer truncatum HOM05D000527 ORTHO05D000559 3.0e-10 67.8 51 68.6
Atru.chr6.2362 Acer truncatum HOM05D000527 ORTHO05D018152 3.0e-10 67.8 51 68.6
Potri.T124908 Populus trichocarpa HOM05D000527 ORTHO05D000559 3.0e-10 67.8 52 69.2
Cfa019178 Carpinus fangiana HOM05D000527 ORTHO05D000559 3.9e-10 67.4 53 69.8
Haze_07556 Corylus avellana HOM05D000527 ORTHO05D000559 3.9e-10 67.4 53 69.8
PSO063G0204 Papaver somniferum HOM05D000527 ORTHO05D000559 3.9e-10 67.4 52 63.5
Prupe.5G169000 Prunus persica HOM05D000527 ORTHO05D000559 3.9e-10 67.4 53 67.9
TAR629G3000 Trochodendron aralioides HOM05D000527 ORTHO05D000559 3.9e-10 67.4 52 71.2
CiPaw.11G022300 Carya illinoinensis HOM05D000527 ORTHO05D000559 5.1e-10 67.0 51 72.5
FAN04G1684 Fragaria x ananassa HOM05D000527 ORTHO05D000559 5.1e-10 67.0 53 64.2
FAN08G2485 Fragaria x ananassa HOM05D000527 ORTHO05D000559 5.1e-10 67.0 53 66.0
FAN18G0080 Fragaria x ananassa HOM05D000527 ORTHO05D000559 5.1e-10 67.0 53 64.2
Psat0s2597g0160 Pisum sativum HOM05D000527 ORTHO05D000559 5.1e-10 67.0 53 60.4
PGSC0003DMG400000513 Solanum tuberosum HOM05D000527 ORTHO05D000559 5.1e-10 67.0 53 62.3
COL.COLO4_30129 Corchorus olitorius HOM05D000527 ORTHO05D000559 6.7e-10 66.6 55 63.6
Dinv20617 Davidia involucrata HOM05D000527 ORTHO05D000559 6.7e-10 66.6 52 67.3
Phvul.009G175400 Phaseolus vulgaris HOM05D000527 ORTHO05D000559 6.7e-10 66.6 53 67.9
Sopen02g031260 Solanum pennellii HOM05D000527 ORTHO05D000559 6.7e-10 66.6 53 62.3
Thecc.03G023500 Theobroma cacao HOM05D000527 ORTHO05D000559 8.7e-10 66.2 52 65.4
CANSAT64G2129 Cannabis sativa HOM05D000527 ORTHO05D000559 1.1e-09 65.9 48 70.8
FvH4_5g05860 Fragaria vesca HOM05D000527 ORTHO05D000559 1.1e-09 65.9 53 64.2
Potri.017G036700 Populus trichocarpa HOM05D000527 ORTHO05D000559 1.1e-09 65.9 51 66.7
Actinidia25102 Actinidia chinensis HOM05D000527 ORTHO05D000111 1.5e-09 65.5 51 60.8
CAN.G473.1 Capsicum annuum HOM05D000527 ORTHO05D000559 1.5e-09 65.5 47 70.2
MBI16_g23857_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.5e-09 65.5 53 64.2
MD06G1169800 Malus domestica HOM05D000527 ORTHO05D000559 1.5e-09 65.5 53 66.0
DCAR_011247 Daucus carota HOM05D000527 ORTHO05D000559 1.9e-09 65.1 52 65.4
Potri.007G123400 Populus trichocarpa HOM05D000527 ORTHO05D000559 1.9e-09 65.1 51 64.7
Solyc02g086530.4 Solanum lycopersicum HOM05D000527 ORTHO05D000559 1.9e-09 65.1 53 58.5
TAR374G0713 Trochodendron aralioides HOM05D000527 ORTHO05D000559 1.9e-09 65.1 52 65.4
Ciclev10014333m.g Citrus clementina HOM05D000527 ORTHO05D000559 2.5e-09 64.7 54 64.8
Ciclev10018941m.g Citrus clementina HOM05D000527 ORTHO05D000559 2.5e-09 64.7 52 63.5
Eucgr.K02813 Eucalyptus grandis HOM05D000527 ORTHO05D000559 2.5e-09 64.7 52 65.4
Sabra07G0099900 Salix brachista HOM05D000527 ORTHO05D000559 2.5e-09 64.7 51 62.7
MSTRG.24032 Avicennia marina HOM05D000527 ORTHO05D000559 3.3e-09 64.3 47 68.1
Duzib147G0050 Durio zibethinus HOM05D000527 ORTHO05D000559 3.3e-09 64.3 51 64.7
Phvul.004G007100 Phaseolus vulgaris HOM05D000527 ORTHO05D000559 3.3e-09 64.3 45 73.3
Rhsim12G0166700 Rhododendron simsii HOM05D000527 ORTHO05D000559 3.3e-09 64.3 53 60.4
RcHm_v2.0_Chr7g0192961 Rosa chinensis HOM05D000527 ORTHO05D000559 3.3e-09 64.3 53 60.4
Sabra15G0105300 Salix brachista HOM05D000527 ORTHO05D000559 3.3e-09 64.3 52 63.5
vmacro16633 Vaccinium macrocarpon HOM05D000527 ORTHO05D000559 3.3e-09 64.3 53 62.3
CSS0021637 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 4.3e-09 63.9 51 64.7
CSS0050491 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 4.3e-09 63.9 51 64.7
Ca_16150_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 4.3e-09 63.9 53 56.6
Gohir.A07G062600 Gossypium hirsutum HOM05D000527 ORTHO05D000559 4.3e-09 63.9 54 61.1
Lj1g0025492 Lotus japonicus HOM05D000527 ORTHO05D000559 4.3e-09 63.9 53 60.4
MD14G1175300 Malus domestica HOM05D000527 ORTHO05D000559 4.3e-09 63.9 53 62.3
Nitab4.5_0005432g0030 Nicotiana tabacum HOM05D000527 ORTHO05D000559 4.3e-09 63.9 52 61.5
TWI39G0007 Tripterygium wilfordii HOM05D000527 ORTHO05D000559 4.3e-09 63.9 53 62.3
VMungo0464G0830 Vigna mungo HOM05D000527 ORTHO05D000559 4.3e-09 63.9 45 71.1
Cfa007383 Carpinus fangiana HOM05D000527 ORTHO05D000559 5.7e-09 63.5 51 64.7
COL.COLO4_30132 Corchorus olitorius HOM05D000527 ORTHO05D000559 5.7e-09 63.5 52 63.5
Haze_14725 Corylus avellana HOM05D000527 ORTHO05D000559 5.7e-09 63.5 51 64.7
Lalb_Chr08g0236651 Lupinus albus HOM05D000527 ORTHO05D000559 5.7e-09 63.5 53 66.0
Oeu024711.1 Olea europaea HOM05D000527 ORTHO05D000559 5.7e-09 63.5 52 59.6
Potri.004G207900 Populus trichocarpa HOM05D000527 ORTHO05D000559 5.7e-09 63.5 51 62.7
Thecc.04G015400 Theobroma cacao HOM05D000527 ORTHO05D000559 5.7e-09 63.5 51 64.7
Aqoxy108s001 Aquilegia oxysepala HOM05D000527 ORTHO05D000559 7.4e-09 63.2 54 61.1
Aqoxy3G01065 Aquilegia oxysepala HOM05D000527 ORTHO05D000559 7.4e-09 63.2 54 61.1
ECA246G4686 Erigeron canadensis HOM05D000527 ORTHO05D000559 7.4e-09 63.2 52 59.6
Gorai.001G070800 Gossypium raimondii HOM05D000527 ORTHO05D000559 7.4e-09 63.2 53 62.3
Manes.06G108300 Manihot esculenta HOM05D000527 ORTHO05D000559 7.4e-09 63.2 52 63.5
QL02p075137 Quercus lobata HOM05D000527 ORTHO05D000559 7.4e-09 63.2 51 62.7
Sabra17G0024100 Salix brachista HOM05D000527 ORTHO05D000559 7.4e-09 63.2 51 62.7
MBI10_g00727_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 9.7e-09 62.8 53 58.5
Nitab4.5_0002682g0060 Nicotiana tabacum HOM05D000527 ORTHO05D000559 9.7e-09 62.8 52 59.6
PGR142G3965 Punica granatum HOM05D000527 ORTHO05D000559 9.7e-09 62.8 53 60.4
QL11p046642 Quercus lobata HOM05D000527 ORTHO05D000559 9.7e-09 62.8 51 62.7
QL11p046744 Quercus lobata HOM05D000527 ORTHO05D000559 9.7e-09 62.8 51 62.7
TWI56G0365 Tripterygium wilfordii HOM05D000527 ORTHO05D000559 9.7e-09 62.8 51 62.7
Atru.chr9.2542 Acer truncatum HOM05D000527 ORTHO05D000559 1.3e-08 62.4 53 56.6
Ah.02g110790 Amaranthus hybridus HOM05D000527 ORTHO05D000559 1.3e-08 62.4 52 65.4
CSS0025347 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 1.3e-08 62.4 52 63.5
CSS0032677 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 1.3e-08 62.4 52 63.5
Migut.H00086 Erythranthe guttata HOM05D000527 ORTHO05D000559 1.3e-08 62.4 44 70.5
FvH4_6g51380 Fragaria vesca HOM05D000527 ORTHO05D000559 1.3e-08 62.4 51 62.7
FAN05G0436 Fragaria x ananassa HOM05D000527 ORTHO05D000559 1.3e-08 62.4 51 62.7
FAN09G3763 Fragaria x ananassa HOM05D000527 ORTHO05D000559 1.3e-08 62.4 51 62.7
Manes.17G115500 Manihot esculenta HOM05D000527 ORTHO05D000559 1.3e-08 62.4 51 64.7
Medtr3g077280 Medicago truncatula HOM05D000527 ORTHO05D000559 1.3e-08 62.4 53 56.6
Oeu063469.1 Olea europaea HOM05D000527 ORTHO05D000559 1.3e-08 62.4 51 60.8
TPR.G33607 Trifolium pratense HOM05D000527 ORTHO05D000559 1.3e-08 62.4 53 56.6
Actinidia06005 Actinidia chinensis HOM05D000527 ORTHO05D000559 1.6e-08 62.0 51 56.9
ATR1152G070 Amborella trichopoda HOM05D000527 ORTHO05D000559 1.6e-08 62.0 54 61.1
Eucgr.J02233 Eucalyptus grandis HOM05D000527 ORTHO05D000559 1.6e-08 62.0 51 64.7
Glyma.05G003900 Glycine max HOM05D000527 ORTHO05D000559 1.6e-08 62.0 50 64.0
Gohir.A05G357500 Gossypium hirsutum HOM05D000527 ORTHO05D000559 1.6e-08 62.0 51 62.7
Lj7C597T15 Lonicera japonica HOM05D000527 ORTHO05D000559 1.6e-08 62.0 51 56.9
RcHm_v2.0_Chr2g0173061 Rosa chinensis HOM05D000527 ORTHO05D000559 1.6e-08 62.0 51 62.7
VMungo1309G1870 Vigna mungo HOM05D000527 ORTHO05D000559 1.6e-08 62.0 53 60.4
Ca_21950_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 2.2e-08 61.6 53 60.4
Gohir.D07G067200 Gossypium hirsutum HOM05D000527 ORTHO05D000559 2.2e-08 61.6 53 60.4
Oeu054617.1 Olea europaea HOM05D000527 ORTHO05D000559 2.2e-08 61.6 52 61.5
Thecc.03G023700 Theobroma cacao HOM05D000527 ORTHO05D000559 2.2e-08 61.6 52 59.6
COL.COLO4_02745 Corchorus olitorius HOM05D000527 ORTHO05D000559 2.8e-08 61.2 48 64.6
Lalb_Chr06g0175831 Lupinus albus HOM05D000527 ORTHO05D000559 2.8e-08 61.2 49 67.3
Medtr4g105250 Medicago truncatula HOM05D000527 ORTHO05D000559 2.8e-08 61.2 53 58.5
Peaxi162Scf00089g01521 Petunia axillaris HOM05D000527 ORTHO05D000559 2.8e-08 61.2 52 59.6
Prupe.3G289900 Prunus persica HOM05D000527 ORTHO05D000559 2.8e-08 61.2 51 60.8
Migut.K01390 Erythranthe guttata HOM05D000527 ORTHO05D000559 3.7e-08 60.8 46 65.2
Lj2g0002756 Lotus japonicus HOM05D000527 ORTHO05D000559 3.7e-08 60.8 48 64.6
QL10p008476 Quercus lobata HOM05D000527 ORTHO05D000559 3.7e-08 60.8 53 64.2
Sc16g0003230 Simmondsia chinensis HOM05D000527 ORTHO05D000559 3.7e-08 60.8 55 58.2
unitig_0.g1602 Utricularia gibba HOM05D000527 ORTHO05D000559 3.7e-08 60.8 47 66.0
arahy.Tifrunner.gnm1.ann1.SCX26U Arachis hypogaea HOM05D000527 ORTHO05D000559 4.8e-08 60.5 60 51.7
EL10Ac5g10688 Beta vulgaris HOM05D000527 ORTHO05D000559 4.8e-08 60.5 52 59.6
Cpa.g.sc108.53 Carica papaya HOM05D000527 ORTHO05D000559 4.8e-08 60.5 50 60.0
CsaV3_3G042690 Cucumis sativus L. HOM05D000527 ORTHO05D000559 4.8e-08 60.5 52 55.8
Glyma.05G040300 Glycine max HOM05D000527 ORTHO05D000559 4.8e-08 60.5 53 62.3
Lsat_1_v5_gn_0_32100 Lactuca sativa HOM05D000527 ORTHO05D000559 4.8e-08 60.5 52 57.7
SHI22297 Sapria himalayana HOM05D000527 ORTHO05D000559 4.8e-08 60.5 52 61.5
Aqoxy6G01015 Aquilegia oxysepala HOM05D000527 ORTHO05D000559 6.3e-08 60.1 53 60.4
arahy.Tifrunner.gnm1.ann1.1YYJ7Z Arachis hypogaea HOM05D000527 ORTHO05D000559 6.3e-08 60.1 53 60.4
arahy.Tifrunner.gnm1.ann1.DBZB80 Arachis hypogaea HOM05D000527 ORTHO05D000559 6.3e-08 60.1 53 60.4
arahy.Tifrunner.gnm1.ann1.WB441U Arachis hypogaea HOM05D000527 ORTHO05D000559 6.3e-08 60.1 53 60.4
CiPaw.03G042100 Carya illinoinensis HOM05D000527 ORTHO05D000559 6.3e-08 60.1 51 60.8
FAN14G1351 Fragaria x ananassa HOM05D000527 ORTHO05D000559 6.3e-08 60.1 51 60.8
FAN14G4154 Fragaria x ananassa HOM05D000527 ORTHO05D000559 6.3e-08 60.1 51 60.8
Lalb_Chr12g0201771 Lupinus albus HOM05D000527 ORTHO05D000559 6.3e-08 60.1 53 58.5
MD17G1030100 Malus domestica HOM05D000527 ORTHO05D000559 6.3e-08 60.1 51 60.8
Medtr6g004880 Medicago truncatula HOM05D000527 ORTHO05D000559 6.3e-08 60.1 46 67.4
Peaxi162Scf00198g00212 Petunia axillaris HOM05D000527 ORTHO05D000559 6.3e-08 60.1 51 60.8
Psat1g055560 Pisum sativum HOM05D000527 ORTHO05D000559 6.3e-08 60.1 46 67.4
Rhsim10G0018300 Rhododendron simsii HOM05D000527 ORTHO05D000559 6.3e-08 60.1 47 61.7
Solyc03g112500.4 Solanum lycopersicum HOM05D000527 ORTHO05D000559 6.3e-08 60.1 52 59.6
Actinidia19120 Actinidia chinensis HOM05D000527 ORTHO05D000559 8.2e-08 59.7 52 59.6
TPR.G37482 Trifolium pratense HOM05D000527 ORTHO05D000559 8.2e-08 59.7 53 60.4
GSVIVG01032425001 Vitis vinifera HOM05D000527 ORTHO05D000559 8.2e-08 59.7 51 58.8
BcaB06g27499 Brassica carinata HOM05D000527 ORTHO05D000559 1.1e-07 59.3 48 62.5
A04p13430 Brassica napus HOM05D000527 ORTHO05D000559 1.1e-07 59.3 48 62.5
BraA04t17001Z Brassica rapa HOM05D000527 ORTHO05D000559 1.1e-07 59.3 48 62.5
Cc07_g01840 Coffea canephora HOM05D000527 ORTHO05D000559 1.1e-07 59.3 51 56.9
Gohir.D04G056600 Gossypium hirsutum HOM05D000527 ORTHO05D000559 1.1e-07 59.3 51 60.8
Gorai.012G063500 Gossypium raimondii HOM05D000527 ORTHO05D000559 1.1e-07 59.3 51 60.8
HanXRQChr17g0548561 Helianthus annuus HOM05D000527 ORTHO05D000559 1.1e-07 59.3 51 54.9
TPR.G14072 Trifolium pratense HOM05D000527 ORTHO05D000559 1.1e-07 59.3 46 67.4
arahy.Tifrunner.gnm1.ann1.B3XDAM Arachis hypogaea HOM05D000527 ORTHO05D000559 1.4e-07 58.9 53 58.5
Duzib264G1194 Durio zibethinus HOM05D000527 ORTHO05D000559 1.4e-07 58.9 51 58.8
Manes.14G062500 Manihot esculenta HOM05D000527 ORTHO05D000559 1.4e-07 58.9 52 59.6
GSVIVG01007681001 Vitis vinifera HOM05D000527 ORTHO05D000559 1.4e-07 58.9 56 55.4
SalBow1G0522 Salvia bowleyana HOM05D000527 ORTHO05D000559 1.8e-07 58.5 46 60.9
vmacro05855 Vaccinium macrocarpon HOM05D000527 ORTHO05D000559 1.8e-07 58.5 47 59.6
CAN.G338.10 Capsicum annuum HOM05D000527 ORTHO05D000559 2.4e-07 58.2 52 55.8
Eucgr.I01755 Eucalyptus grandis HOM05D000527 ORTHO05D000559 2.4e-07 58.2 55 56.4
Glyma.19G004400 Glycine max HOM05D000527 ORTHO05D018152 2.4e-07 58.2 50 62.0
Nn6g34167 Nelumbo nucifera HOM05D067045 ORTHO05D018152 2.4e-07 58.2 33 90.9
C04p47160 Brassica napus HOM05D000527 ORTHO05D000559 3.1e-07 57.8 48 58.3
BolC4t26314H Brassica oleracea HOM05D000527 ORTHO05D000559 3.1e-07 57.8 48 58.3
CDE06G2306 Ceratophyllum demersum HOM05D000527 ORTHO05D000559 3.1e-07 57.8 53 58.5
Ca_04158_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 3.1e-07 57.8 46 63.0
ClCG01G013370 Citrullus lanatus HOM05D000527 ORTHO05D000559 3.1e-07 57.8 53 54.7
CDE04G1544 Ceratophyllum demersum HOM05D000527 ORTHO05D000559 4.1e-07 57.4 53 56.6
Cc00_g10830 Coffea canephora HOM05D000527 ORTHO05D000559 4.1e-07 57.4 52 55.8
Lj4g0007069 Lotus japonicus HOM05D000527 ORTHO05D000559 4.1e-07 57.4 53 58.5
PGSC0003DMG400037864 Solanum tuberosum HOM05D000527 ORTHO05D018152 5.3e-07 57.0 52 55.8
Eucgr.I01757 Eucalyptus grandis HOM05D000527 ORTHO05D000559 6.9e-07 56.6 54 55.6
Eucgr.L02707 Eucalyptus grandis HOM05D000527 ORTHO05D000559 6.9e-07 56.6 54 55.6
Thhalv10027649m.g Eutrema salsugineum HOM05D000527 ORTHO05D000559 6.9e-07 56.6 49 55.1
MELO3C002287.2 Cucumis melo HOM05D000527 ORTHO05D000559 9.0e-07 56.2 53 54.7
vmacro05458 Vaccinium macrocarpon HOM05D000527 ORTHO05D018152 9.0e-07 56.2 45 60.0
HPP92_000305 Vanilla planifolia HOM05D000527 ORTHO05D000559 9.0e-07 56.2 53 52.8
AL7G49480 Arabidopsis lyrata HOM05D000527 ORTHO05D000559 1.2e-06 55.8 48 56.2
AT5G40390 Arabidopsis thaliana HOM05D000527 ORTHO05D000559 1.2e-06 55.8 48 56.2
ClCG10G013980 Citrullus lanatus HOM05D000527 ORTHO05D000559 1.2e-06 55.8 52 51.9
MELO3C009979.2 Cucumis melo HOM05D000527 ORTHO05D000559 1.2e-06 55.8 52 51.9
Carub.0007s3521 Capsella rubella HOM05D000527 ORTHO05D000559 1.5e-06 55.5 48 56.2
Sp7g01530 Schrenkiella parvula HOM05D000527 ORTHO05D000559 2.0e-06 55.1 48 54.2
Sopen03g031560 Solanum pennellii HOM05D000527 ORTHO05D000559 2.0e-06 55.1 52 55.8
Sed0014979 Sechium edule HOM05D000527 ORTHO05D000559 2.6e-06 54.7 52 50.0
Gohir.D09G028250 Gossypium hirsutum HOM05D000527 ORTHO05D000559 3.4e-06 54.3 51 54.9
CsaV3_1G008720 Cucumis sativus L. HOM05D000527 ORTHO05D000559 4.5e-06 53.9 53 52.8
Gohir.A09G028700 Gossypium hirsutum HOM05D000527 ORTHO05D000559 5.9e-06 53.5 51 54.9
Gorai.006G032900 Gossypium raimondii HOM05D000527 ORTHO05D000559 7.7e-06 53.1 51 52.9
THA.LOC104805378 Tarenaya hassleriana HOM05D000527 ORTHO05D000559 7.7e-06 53.1 48 56.2
EL10Ac1g01521 Beta vulgaris HOM05D000527 ORTHO05D000559 1.0e-05 52.8 47 55.3
CARHR261630 Cardamine hirsuta HOM05D000527 ORTHO05D000559 1.0e-05 52.8 48 54.2


User provided reference genes

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