Gene: AT5G40390

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G40390
  • Transcript Identifier AT5G40390.1
  • Gene Type Coding gene
  • Location Chr5 : 16161720-16165085 : positive

Gene Family Information

  • ID HOM05D000527
  • #Genes/#Species 1034/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G40390.1
  • symbol SIP1
  • Alias RS5,raffinose synthase 5
  • full_name seed imbibition 1-like
  • uniprot Q9FND9

Descriptions

  • Description Raffinose synthase family protein
  • Computational description seed imbibition 1-like (SIP1); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, galactinol-sucrose galactosyltransferase activity; INVOLVED IN: mannitol biosynthetic process, raffinose family oligosaccharide biosynthetic process, response to water deprivation, sucrose biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: Raffinose synthase family protein (TAIR:AT5G20250.4); Has 508 Blast hits to 470 proteins in 135 species: Archae - 27; Bacteria - 74; Metazoa - 0; Fungi - 82; Plants - 317; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009414
IEP
Gene Ontologyresponse to water deprivation1
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process
GO:0009737
IDA
GOA Databaseresponse to abscisic acid
GO:0006979
IEP
Gene Ontologyresponse to oxidative stress2
GO:0019593
IMP
Gene Ontologymannitol biosynthetic process
GO:0010325
IMP
Gene Ontologyraffinose family oligosaccharide biosynthetic process
GO:0005986
IMP
Gene Ontologysucrose biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
InterProcatalytic activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016757
IEA
GOA Databaseglycosyltransferase activity
GO:0047274
IEA
GOA Databasegalactinol-sucrose galactosyltransferase activity
GO:0047274
ISS, IBA
Gene Ontologygalactinol-sucrose galactosyltransferase activity3 4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IDA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast5
GO:0005634
ISM
Gene Ontologynucleus
GO:0005737
ISM
Gene Ontologycytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017853 Glycoside hydrolase superfamily
IPR008811 Glycosyl hydrolases 36
IPR013785 Aldolase-type TIM barrel
Mapman id Description
3.4.2 Carbohydrate metabolism.oligosaccharide metabolism.raffinose synthase