Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 2288.5 1176 100.0
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1568.5 1182 70.8
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1405.2 1248 63.0
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1400.6 1182 64.0
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1389.0 1261 61.6
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1388.2 1187 63.5
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1373.6 1229 60.9
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1365.9 1188 62.9
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1363.6 1188 62.8
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1362.1 1181 62.8
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1361.3 1226 60.9
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1357.8 1183 62.4
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1353.2 1167 63.1
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1339.3 1081 64.9
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1332.4 1207 61.4
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1331.2 1163 62.3
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1317.4 1180 60.5
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1313.5 1182 61.6
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1308.5 1180 60.3
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1306.6 1224 59.9
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1303.9 1237 59.2
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1300.8 953 70.4
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1300.4 1239 58.4
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1299.3 1389 55.7
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1298.1 1191 60.5
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1293.1 1184 60.2
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1287.7 1181 60.0
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1280.4 1191 59.9
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1280.4 1189 59.0
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1280.0 1190 59.1
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1279.6 1164 60.2
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1278.5 1169 60.3
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1277.7 1190 60.3
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1276.9 1209 59.6
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1273.1 1191 59.8
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1266.5 1191 58.9
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1266.1 1178 59.0
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1266.1 1248 56.6
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1261.9 1184 59.5
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1259.2 1184 59.4
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1257.7 1176 59.4
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1256.9 1178 59.8
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1256.5 1190 59.2
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1256.5 1361 53.7
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1254.2 1104 62.2
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1249.6 1186 59.6
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1249.6 1030 64.7
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1246.9 1176 58.9
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1243.8 1211 58.2
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1243.8 1056 63.8
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1241.1 1095 62.2
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1240.7 875 71.9
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1236.5 1243 56.8
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 0.0e+00 1224.9 1212 58.3
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 0.0e+00 1223.4 1296 55.5
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1221.5 1239 55.6
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1219.1 918 68.1
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1218.0 946 66.9
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1206.0 1225 57.0
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 0.0e+00 1206.0 1114 58.9
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1200.7 1178 58.0
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 0.0e+00 1195.3 1112 59.7
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1187.9 1184 58.0
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1186.8 1201 57.0
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1186.8 1260 54.8
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1184.9 1119 59.1
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 0.0e+00 1178.7 1207 56.6
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 0.0e+00 1177.9 1226 55.9
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1177.5 1211 55.0
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1174.1 1208 56.5
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1171.8 1113 58.2
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 0.0e+00 1151.3 1241 54.1
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1136.7 878 68.3
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 0.0e+00 1121.7 1040 59.1
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 0.0e+00 1091.3 1014 60.2
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 0.0e+00 1078.5 1002 59.7
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 8.0e-312 1073.9 849 66.1
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 9.7e-311 1070.5 810 67.9
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 3.9e-309 1065.1 813 68.6
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 7.4e-308 1060.8 838 67.5
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.3e-304 1050.0 1072 54.7
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 2.5e-303 1045.8 951 61.3
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 1.6e-294 1016.5 1183 52.5
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 3.4e-284 982.2 887 60.4
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 1.4e-282 976.9 1182 48.6
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 2.0e-281 973.0 496 100.0
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 3.9e-272 942.2 1310 44.4
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 5.0e-272 941.8 1075 49.9
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 8.9e-269 931.0 1035 51.1
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 3.2e-266 922.5 691 68.7
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 1.6e-265 920.2 694 68.4
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 1.1e-263 914.1 1146 47.6
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 1.5e-263 913.7 713 68.9
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.6e-249 867.1 876 54.6
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.2e-242 842.8 918 52.2
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 5.4e-242 842.0 632 69.8
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 5.1e-240 835.5 595 71.8
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 5.3e-237 825.5 613 68.0
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 4.1e-205 719.5 1087 43.3
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 2.9e-203 713.4 738 55.6
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 3.9e-192 676.4 473 71.5
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 4.2e-186 656.4 697 54.1
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 5.6e-162 576.2 761 44.8
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.4e-160 571.6 743 47.5
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 4.0e-160 570.1 416 70.0
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 8.6e-139 499.2 390 67.4
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 5.8e-135 486.5 421 62.2
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 4.6e-124 450.3 348 67.0
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 9.6e-106 389.4 462 51.7
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 6.7e-99 366.7 276 69.2
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 1.4e-91 342.4 375 47.2
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.3e-67 261.9 525 36.2
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.6e-66 258.5 227 58.6
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 3.5e-63 248.1 344 45.9
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 6.5e-62 243.8 200 65.0
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 1.2e-60 239.6 147 79.6
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 1.0e-59 236.5 709 29.6
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 1.5e-58 232.6 154 73.4
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.8e-56 225.7 255 50.6
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 9.1e-56 223.4 232 52.2
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 9.1e-56 223.4 148 74.3
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 6.6e-54 217.2 165 69.7
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 8.6e-54 216.9 177 65.5
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 2.5e-53 215.3 441 39.2
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 7.2e-53 213.8 166 63.9
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 6.1e-52 210.7 721 28.0
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.6e-47 196.1 737 26.2
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.3e-46 192.2 171 60.8
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 3.3e-45 188.3 887 24.7
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 7.3e-45 187.2 147 63.9
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 3.6e-44 184.9 778 25.4
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 8.0e-44 183.7 737 25.5
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.5e-42 179.5 690 26.4
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 5.8e-42 177.6 212 52.4
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.9e-40 172.6 156 59.0
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 9.2e-40 170.2 118 66.9
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 1.2e-39 169.9 278 40.6
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 4.6e-39 167.9 132 63.6
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 4.6e-39 167.9 255 41.6
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.4e-34 151.8 157 51.6
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 7.5e-34 150.6 482 30.3
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 2.2e-33 149.1 802 25.6
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 4.3e-29 134.8 842 22.9
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 3.6e-28 131.7 489 26.4
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.8e-27 129.4 755 24.2
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 8.3e-25 120.6 137 48.9
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 7.1e-24 117.5 72 76.4
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 9.2e-24 117.1 114 59.6
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 3.5e-23 115.2 305 30.8
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 4.6e-23 114.8 82 68.3
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 2.3e-22 112.5 105 52.4
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-20 105.5 295 30.5
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 2.4e-19 102.4 687 25.0
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 2.6e-18 99.0 69 75.4
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 3.2e-16 92.0 264 26.1
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.3e-14 85.9 127 39.4
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 1.6e-12 79.7 439 23.9
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 3.4e-10 72.0 102 43.1
MD07G1245800 Malus domestica HOM05D002705 ORTHO05D004955 1.2e-07 63.5 188 33.5
FvH4_3g31690 Fragaria vesca HOM05D000769 ORTHO05D000598 2.1e-07 62.8 103 37.9
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 6.0e-07 61.2 183 30.1
Lsat_1_v5_gn_9_1780 Lactuca sativa HOM05D002705 ORTHO05D004955 6.0e-07 61.2 81 49.4
SMO115G0155 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.0e-06 60.5 69 42.0
Lsat_1_v5_gn_8_47661 Lactuca sativa HOM05D002705 ORTHO05D004955 8.7e-06 57.4 70 52.9


User provided reference genes

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