Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 2.5e-192 675.2 336 100.0
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 6.9e-142 507.7 337 77.2
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 3.7e-135 485.3 336 71.1
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 1.5e-133 479.9 336 70.2
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 8.5e-132 474.2 339 72.0
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 3.6e-130 468.8 332 70.5
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 1.8e-129 466.5 339 71.1
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 3.0e-129 465.7 336 70.8
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 3.0e-129 465.7 336 69.3
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 3.9e-129 465.3 332 71.4
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 5.2e-129 464.9 336 70.2
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 8.8e-129 464.2 333 69.7
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 4.4e-128 461.8 336 70.2
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 5.7e-128 461.5 332 69.0
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 5.7e-128 461.5 335 69.3
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 7.4e-128 461.1 339 70.2
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 9.7e-128 460.7 338 67.2
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 1.7e-127 459.9 329 71.1
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 2.2e-127 459.5 331 71.6
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 2.8e-127 459.1 337 68.8
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 4.8e-127 458.4 336 67.9
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 1.1e-126 457.2 337 69.1
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 1.1e-126 457.2 331 69.8
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 1.4e-126 456.8 336 68.2
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 2.4e-126 456.1 336 68.5
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 2.4e-126 456.1 337 69.4
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 4.1e-126 455.3 337 68.8
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 4.1e-126 455.3 335 68.1
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 5.3e-126 454.9 336 68.2
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 7.0e-126 454.5 336 67.9
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 1.6e-125 453.4 338 68.0
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.6e-125 453.4 336 67.0
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 2.0e-125 453.0 336 68.2
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 2.6e-125 452.6 339 69.0
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 2.6e-125 452.6 339 69.0
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 3.5e-125 452.2 336 66.4
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 7.7e-125 451.1 336 66.4
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 1.3e-124 450.3 331 68.9
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 1.3e-124 450.3 336 66.4
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 2.2e-124 449.5 337 67.4
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 2.9e-124 449.1 333 68.8
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 1.1e-123 447.2 339 67.6
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 1.5e-123 446.8 334 67.7
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 1.9e-123 446.4 331 68.3
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 2.5e-123 446.0 361 65.4
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 5.5e-123 444.9 332 66.6
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 5.5e-123 444.9 335 68.1
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 1.6e-122 443.4 345 66.1
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 2.1e-122 443.0 336 65.2
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 3.6e-122 442.2 337 67.7
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 6.1e-122 441.4 335 65.7
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 6.1e-122 441.4 333 68.8
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 8.0e-122 441.0 332 67.2
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 1.4e-121 440.3 332 65.4
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 6.7e-121 438.0 331 68.6
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 3.3e-120 435.6 378 60.3
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 9.7e-120 434.1 334 65.9
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 6.3e-119 431.4 333 67.0
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 1.2e-117 427.2 331 66.5
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 5.0e-116 421.8 330 63.9
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 8.5e-116 421.0 332 64.5
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 8.5e-116 421.0 338 64.2
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 4.0e-113 412.1 333 64.9
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 1.5e-112 410.2 324 67.6
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 3.4e-112 409.1 347 61.1
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 1.7e-111 406.8 333 62.5
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 2.7e-109 399.4 325 64.0
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 1.7e-108 396.7 331 59.5
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 5.5e-107 391.7 342 59.9
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 9.5e-107 391.0 331 61.0
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 2.3e-105 386.3 336 57.4
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 2.0e-104 383.3 338 58.9
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 1.7e-103 380.2 334 59.3
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 3.7e-103 379.0 334 59.0
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 1.6e-101 373.6 339 56.6
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 1.3e-100 370.5 292 64.4
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 1.5e-99 367.1 357 54.9
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 1.9e-99 366.7 332 58.1
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 5.6e-99 365.2 331 58.9
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 5.6e-99 365.2 331 58.9
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 1.6e-98 363.6 331 58.3
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 1.6e-98 363.6 328 58.2
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 2.8e-98 362.8 331 57.4
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 5.2e-97 358.6 331 57.7
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 1.2e-96 357.5 331 57.4
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 7.5e-96 354.8 337 56.4
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 1.7e-95 353.6 331 56.2
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 1.9e-94 350.1 313 58.8
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 2.4e-94 349.7 245 72.7
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 4.1e-94 349.0 337 56.1
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 5.6e-91 338.6 303 60.7
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 2.1e-90 336.7 328 53.4
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 3.6e-90 335.9 337 54.3
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 4.4e-88 328.9 336 53.0
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 4.9e-87 325.5 337 52.5
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 3.7e-79 299.3 365 46.8
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 7.1e-78 295.0 282 56.0
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 2.1e-77 293.5 335 48.4
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 1.1e-75 287.7 246 63.8
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 3.2e-70 269.6 347 45.5
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 3.8e-63 246.1 179 68.7
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 1.3e-60 237.7 310 42.9
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 3.9e-60 236.1 463 35.0
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 2.7e-53 213.4 336 39.3
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 6.0e-53 212.2 338 38.5
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 8.7e-52 208.4 171 64.9
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 2.1e-50 203.8 204 54.9
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 2.1e-50 203.8 151 68.2
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 6.1e-37 159.1 175 51.4
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.0e-36 158.3 156 49.4
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.3e-36 157.9 145 52.4
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.1e-35 154.8 152 55.3
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 2.5e-35 153.7 172 48.8
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 5.3e-33 146.0 161 46.0
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 8.2e-26 122.1 81 70.4
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 3.8e-23 113.2 71 70.4
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 2.1e-21 107.5 73 65.8
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 2.2e-18 97.4 132 40.9
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 1.5e-16 91.3 134 47.0
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 2.2e-15 87.4 71 64.8
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 1.5e-11 74.7 54 72.2
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 9.7e-11 72.0 57 57.9
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 1.4e-09 68.2 42 66.7
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 5.5e-06 56.2 81 42.0
Ca_29090_v3 Cicer arietinum L. HOM05D000582 ORTHO05D034183 9.4e-06 55.5 116 27.6


User provided reference genes

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