Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.4e-11 71.6 36 100.0
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.4e-11 71.6 36 100.0
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.4e-11 71.6 36 100.0
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 5.2e-11 69.7 35 94.3
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 5.2e-11 69.7 35 94.3
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 5.2e-11 69.7 35 94.3
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 5.2e-11 69.7 35 94.3
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 5.2e-11 69.7 35 94.3
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 5.2e-11 69.7 35 94.3
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 5.2e-11 69.7 35 94.3
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 5.2e-11 69.7 35 94.3
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 5.2e-11 69.7 35 94.3
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 5.2e-11 69.7 35 94.3
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 5.2e-11 69.7 35 94.3
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 5.2e-11 69.7 35 94.3
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 5.2e-11 69.7 35 94.3
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 5.2e-11 69.7 35 94.3
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 5.2e-11 69.7 35 94.3
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.6e-10 67.4 35 88.6
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.6e-10 67.4 35 88.6
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 2.6e-10 67.4 35 88.6
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 2.6e-10 67.4 35 88.6
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 7.5e-10 65.9 35 82.9
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 7.5e-10 65.9 35 82.9
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 9.8e-10 65.5 35 88.6
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 9.8e-10 65.5 35 88.6
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 9.8e-10 65.5 35 88.6
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 9.8e-10 65.5 35 88.6
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 9.8e-10 65.5 35 82.9
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 9.8e-10 65.5 35 88.6
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 9.8e-10 65.5 35 82.9
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 9.8e-10 65.5 35 82.9
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 9.8e-10 65.5 35 85.7
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 1.3e-09 65.1 35 80.0
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 1.3e-09 65.1 34 85.3
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 1.3e-09 65.1 34 85.3
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 1.3e-09 65.1 34 85.3
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 1.3e-09 65.1 35 82.9
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 1.7e-09 64.7 35 82.9
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 1.7e-09 64.7 35 80.0
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 1.7e-09 64.7 35 80.0
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 1.7e-09 64.7 35 80.0
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 2.2e-09 64.3 35 80.0
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 2.2e-09 64.3 35 80.0
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 2.2e-09 64.3 35 85.7
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 2.2e-09 64.3 35 80.0
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 2.8e-09 63.9 35 80.0
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 2.8e-09 63.9 35 77.1
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 3.7e-09 63.5 35 77.1
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 3.7e-09 63.5 34 82.4
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 3.7e-09 63.5 34 82.4
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 3.7e-09 63.5 34 82.4
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 4.8e-09 63.2 35 77.1
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 4.8e-09 63.2 35 77.1
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 6.3e-09 62.8 34 79.4
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 8.3e-09 62.4 34 82.4
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 8.3e-09 62.4 34 79.4
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 1.1e-08 62.0 35 71.4
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 1.8e-08 61.2 35 71.4
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 2.4e-08 60.8 35 71.4
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 2.4e-08 60.8 35 71.4
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 2.4e-08 60.8 35 68.6
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 3.1e-08 60.5 35 71.4
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 3.1e-08 60.5 35 71.4
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 3.1e-08 60.5 35 71.4
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 3.1e-08 60.5 33 84.8
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 3.1e-08 60.5 33 78.8
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 3.1e-08 60.5 35 71.4
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 4.1e-08 60.1 35 65.7
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 4.1e-08 60.1 35 65.7
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 9.1e-08 58.9 35 74.3
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 9.1e-08 58.9 35 68.6
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 9.1e-08 58.9 35 68.6
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 9.1e-08 58.9 35 80.0
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 1.2e-07 58.5 35 68.6
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 1.2e-07 58.5 35 80.0
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 2.7e-07 57.4 35 71.4
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 2.7e-07 57.4 35 71.4
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 2.7e-07 57.4 35 71.4
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 2.7e-07 57.4 35 71.4
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 2.7e-07 57.4 35 71.4
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 2.7e-07 57.4 35 71.4
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 3.5e-07 57.0 35 68.6
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 3.5e-07 57.0 35 68.6
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 3.5e-07 57.0 35 68.6
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 3.5e-07 57.0 35 68.6
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 3.5e-07 57.0 35 68.6
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 3.5e-07 57.0 35 68.6
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 3.5e-07 57.0 34 76.5
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 3.5e-07 57.0 35 68.6
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 4.5e-07 56.6 35 80.0
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 5.9e-07 56.2 35 71.4
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 7.7e-07 55.8 33 81.8
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 1.0e-06 55.5 35 65.7
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 1.3e-06 55.1 33 75.8
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.3e-06 55.1 32 78.1
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.3e-06 55.1 32 78.1
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 2.2e-06 54.3 35 74.3
Nitab4.5_0020737g0030 Nicotiana tabacum HOM05D002824 ORTHO05D007162 6.5e-06 52.8 29 86.2
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 6.5e-06 52.8 30 83.3


User provided reference genes

Program Settings