Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 6.4e-167 590.9 345 100.0
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 8.1e-146 520.8 311 99.7
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.1e-123 447.2 313 82.4
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 4.1e-121 438.7 313 84.0
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 3.3e-115 419.1 312 83.7
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 1.7e-114 416.8 312 83.7
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.6e-112 409.5 309 82.8
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 5.9e-112 408.3 316 81.6
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 3.2e-110 402.5 314 76.8
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 3.2e-110 402.5 319 80.3
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 2.0e-107 393.3 312 77.2
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 2.0e-107 393.3 313 78.3
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 3.3e-107 392.5 313 79.2
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 1.7e-106 390.2 317 79.8
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 3.7e-106 389.0 318 76.1
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 6.3e-106 388.3 314 76.8
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 1.8e-105 386.7 316 76.6
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 3.1e-105 386.0 314 76.1
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 2.6e-104 382.9 316 77.5
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 2.2e-103 379.8 311 76.8
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 2.2e-103 379.8 310 70.0
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 3.8e-103 379.0 226 89.4
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 5.0e-103 378.6 310 71.0
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 1.1e-102 377.5 314 73.9
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.5e-102 377.1 310 69.7
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 3.2e-102 375.9 318 78.3
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 3.2e-102 375.9 308 78.9
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 4.2e-102 375.6 315 70.5
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 5.5e-102 375.2 318 78.0
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 7.2e-102 374.8 315 75.2
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 7.2e-102 374.8 308 77.6
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 9.4e-102 374.4 310 75.5
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.2e-101 374.0 310 78.4
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 2.1e-101 373.2 314 69.7
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 3.6e-101 372.5 314 72.9
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 1.4e-100 370.5 310 75.8
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 3.0e-100 369.4 311 78.8
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 3.3e-99 365.9 314 66.6
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 3.3e-99 365.9 313 75.1
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 4.4e-99 365.5 313 67.1
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 7.5e-99 364.8 310 73.2
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 9.7e-99 364.4 315 66.0
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 9.7e-99 364.4 315 71.7
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 3.7e-98 362.5 238 84.5
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 1.8e-97 360.1 316 74.1
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 3.1e-97 359.4 314 76.4
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 9.1e-97 357.8 310 73.9
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 2.0e-96 356.7 318 72.3
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 3.5e-96 355.9 306 71.2
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 3.5e-96 355.9 310 72.9
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 7.7e-96 354.8 311 66.6
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 2.9e-95 352.8 313 63.3
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.9e-95 352.8 310 72.6
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 8.5e-95 351.3 317 71.9
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.9e-94 350.1 324 66.7
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 3.2e-94 349.4 312 72.4
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 7.2e-94 348.2 230 83.9
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.1e-93 346.7 318 72.6
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 2.1e-93 346.7 318 72.6
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 2.1e-93 346.7 312 73.7
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 1.8e-92 343.6 312 73.4
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.0e-92 342.8 318 72.0
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 3.0e-92 342.8 315 74.9
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 2.6e-91 339.7 311 74.9
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 5.7e-91 338.6 354 58.8
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 2.8e-90 336.3 313 70.9
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 3.7e-90 335.9 312 69.9
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 8.3e-90 334.7 199 88.4
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 2.4e-89 333.2 314 73.6
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 7.7e-88 328.2 314 72.6
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.0e-87 327.8 221 78.7
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 2.2e-87 326.6 312 72.1
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 2.2e-87 326.6 310 62.6
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 1.6e-85 320.5 228 78.5
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 2.8e-85 319.7 217 80.2
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 8.0e-85 318.2 236 75.0
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 6.8e-84 315.1 240 73.8
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 1.2e-83 314.3 421 49.2
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 3.5e-80 302.8 220 75.0
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 8.6e-79 298.1 313 68.4
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 8.6e-79 298.1 318 65.7
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 9.5e-78 294.7 310 68.4
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 1.2e-77 294.3 318 61.0
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 1.0e-76 291.2 313 67.7
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 6.8e-76 288.5 185 81.1
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 8.9e-76 288.1 238 66.8
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 1.5e-75 287.3 309 65.0
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 1.5e-75 287.3 326 57.1
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 4.4e-75 285.8 311 60.1
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 3.2e-73 279.6 188 79.8
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 4.6e-72 275.8 237 67.1
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 5.6e-70 268.9 317 63.1
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 9.5e-70 268.1 318 62.3
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 1.6e-69 267.3 237 64.6
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 2.1e-69 266.9 320 60.3
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 4.7e-69 265.8 238 63.4
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 3.1e-68 263.1 239 63.6
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 1.2e-67 261.2 310 61.3
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 1.2e-67 261.2 310 60.0
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 4.9e-66 255.8 316 60.8
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 1.9e-65 253.8 314 61.5
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 4.1e-65 252.7 224 67.0
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 4.6e-64 249.2 313 61.0
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 4.6e-64 249.2 313 61.0
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 3.0e-63 246.5 320 58.8
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 5.0e-63 245.7 311 60.5
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 1.2e-61 241.1 310 58.4
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 1.6e-61 240.7 314 58.9
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 2.1e-61 240.4 202 64.4
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 5.2e-60 235.7 269 68.4
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 7.5e-59 231.9 235 57.9
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 1.2e-56 224.6 266 54.9
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 1.3e-55 221.1 198 60.6
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.5e-54 216.9 187 61.5
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 9.5e-54 214.9 189 61.4
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 8.6e-47 191.8 309 44.3
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 1.6e-45 187.6 213 53.5
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 3.6e-45 186.4 310 44.2
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 2.6e-43 180.3 136 73.5
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 3.8e-42 176.4 169 65.7
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 1.6e-40 171.0 308 40.9
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 4.6e-40 169.5 216 56.9
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 3.3e-38 163.3 117 71.8
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 5.8e-35 152.5 223 49.3
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 2.9e-34 150.2 253 41.1
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.6e-16 91.3 49 87.8
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.6e-16 91.3 49 87.8
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.6e-16 91.3 49 87.8
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.3e-15 88.2 49 85.7
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 6.7e-15 85.9 186 34.4
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 1.9e-14 84.3 43 88.4
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 2.8e-13 80.5 44 84.1
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 2.4e-12 77.4 149 32.9
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 4.5e-11 73.2 138 54.3
Actinidia21317 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.8e-07 61.2 60 53.3
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 3.3e-06 57.0 102 36.3


User provided reference genes

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