Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0025882g0010 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.3e-94 349.7 187 100.0
Nitab4.5_0000378g0100 Nicotiana tabacum HOM05D003481 ORTHO05D004001 9.6e-93 343.6 187 97.3
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 1.4e-88 329.7 187 94.1
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 1.6e-87 326.2 187 93.0
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 3.9e-86 321.6 187 92.5
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 2.3e-78 295.8 187 83.4
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 6.7e-78 294.3 187 82.4
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 7.4e-77 290.8 187 81.8
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 5.3e-75 284.6 185 81.1
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 3.3e-69 265.4 187 80.2
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 2.8e-68 262.3 187 74.9
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 2.4e-67 259.2 188 75.5
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 9.1e-67 257.3 187 74.3
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 5.9e-66 254.6 185 73.5
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 5.5e-64 248.1 187 71.1
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 9.4e-64 247.3 187 69.5
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 1.6e-63 246.5 187 69.5
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 2.7e-63 245.7 187 68.4
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 1.0e-62 243.8 187 68.4
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 4.0e-62 241.9 182 69.8
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 5.2e-62 241.5 187 67.4
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 6.7e-62 241.1 187 67.4
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 6.7e-62 241.1 187 67.4
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.0e-61 239.6 187 66.8
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 2.6e-61 239.2 187 68.4
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 3.3e-61 238.8 187 69.0
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 7.5e-61 237.7 189 68.8
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 9.7e-61 237.3 187 66.3
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 2.2e-60 236.1 185 69.7
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 4.8e-60 235.0 187 68.4
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 1.1e-59 233.8 188 69.1
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 4.1e-59 231.9 188 68.6
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 5.3e-59 231.5 188 68.6
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 7.0e-59 231.1 187 66.3
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 9.1e-59 230.7 187 66.8
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 1.6e-58 229.9 187 66.8
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 2.0e-58 229.6 189 66.1
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 2.6e-58 229.2 187 65.2
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 4.5e-58 228.4 187 67.4
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 4.5e-58 228.4 187 67.4
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 1.7e-57 226.5 187 66.8
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 1.7e-57 226.5 187 66.8
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 1.7e-57 226.5 208 61.1
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 1.7e-57 226.5 187 66.8
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 2.9e-57 225.7 188 64.9
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 8.5e-57 224.2 187 64.7
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 1.1e-56 223.8 187 65.8
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.1e-56 223.8 188 67.0
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 1.9e-56 223.0 187 63.6
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 2.5e-56 222.6 186 66.7
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 2.5e-56 222.6 186 65.6
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 2.5e-56 222.6 187 65.2
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 3.2e-56 222.2 187 65.8
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 3.2e-56 222.2 188 65.4
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 4.2e-56 221.9 185 65.4
Lj1A1155G48 Lonicera japonica HOM05D003481 ORTHO05D004001 4.2e-56 221.9 167 71.9
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 4.2e-56 221.9 187 63.6
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 5.5e-56 221.5 187 65.2
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 7.2e-56 221.1 188 64.4
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 1.2e-55 220.3 187 64.7
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 2.1e-55 219.5 185 64.9
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 2.1e-55 219.5 187 63.6
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 2.7e-55 219.2 187 63.1
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 3.6e-55 218.8 187 62.6
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 4.7e-55 218.4 188 64.9
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 6.1e-55 218.0 187 63.6
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 6.1e-55 218.0 187 63.6
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 6.1e-55 218.0 187 62.6
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 8.0e-55 217.6 187 63.6
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 8.0e-55 217.6 187 63.1
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 8.0e-55 217.6 186 64.0
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 1.0e-54 217.2 185 64.9
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 1.0e-54 217.2 187 62.0
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 1.4e-54 216.9 185 62.7
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 1.8e-54 216.5 188 63.3
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 1.8e-54 216.5 186 63.4
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 1.8e-54 216.5 187 63.6
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 2.3e-54 216.1 178 64.0
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 3.0e-54 215.7 186 64.0
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 4.0e-54 215.3 187 63.1
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 4.0e-54 215.3 185 62.2
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 5.2e-54 214.9 187 62.6
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 5.2e-54 214.9 187 63.1
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 5.2e-54 214.9 186 62.4
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 6.8e-54 214.5 185 62.2
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 8.8e-54 214.2 186 64.0
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 8.8e-54 214.2 186 62.4
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 8.8e-54 214.2 187 64.2
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 2.0e-53 213.0 185 62.2
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 2.0e-53 213.0 185 62.2
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 2.6e-53 212.6 187 61.0
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 2.6e-53 212.6 187 61.0
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 6.3e-52 208.0 168 64.9
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 2.0e-50 203.0 198 60.1
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 5.0e-49 198.4 255 49.4
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.2e-47 193.7 175 59.4
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 1.0e-46 190.7 290 43.8
Actinidia33646 Actinidia chinensis HOM05D003481 ORTHO05D004001 4.0e-46 188.7 147 67.3
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 4.0e-46 188.7 155 62.6
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 6.8e-46 188.0 187 55.6
SEGI_29135 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 2.6e-45 186.0 175 61.1
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 3.7e-44 182.2 170 56.5
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 4.9e-44 181.8 187 55.1
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 1.4e-43 180.3 174 54.0
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 3.1e-43 179.1 160 57.5
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 9.1e-43 177.6 185 53.0
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 1.6e-42 176.8 170 56.5
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 1.7e-41 173.3 178 53.9
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 1.9e-40 169.9 212 48.6
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 7.2e-40 167.9 177 53.1
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 4.7e-39 165.2 185 50.8
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 1.4e-38 163.7 177 52.0
arahy.Tifrunner.gnm1.ann1.0SF8RD Arachis hypogaea HOM05D003481 ORTHO05D004001 3.4e-37 159.1 129 67.4
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 4.4e-37 158.7 185 48.6
MBI19_g43313_MAGBIO Magnolia biondii HOM05D003481 ORTHO05D004001 7.5e-37 157.9 132 68.2
SHI31590 Sapria himalayana HOM05D003481 ORTHO05D004001 7.3e-32 141.4 138 55.8
CSS0015411 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.8e-30 136.7 101 68.3
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 2.6e-29 132.9 176 46.0
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 6.0e-26 121.7 137 47.4
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 6.6e-25 118.2 134 52.2
Oeu018810.1 Olea europaea HOM05D003481 ORTHO05D004001 4.3e-24 115.5 108 52.8
Haze_05982 Corylus avellana HOM05D003481 ORTHO05D004001 5.6e-24 115.2 89 67.4
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 1.6e-23 113.6 176 40.9
Os04g0212200 Oryza sativa ssp. japonica HOM05D003481 ORTHO05D004001 1.1e-22 110.9 111 50.5
arahy.Tifrunner.gnm1.ann1.DYC2U6 Arachis hypogaea HOM05D003481 ORTHO05D004001 2.1e-18 96.7 79 63.3
CBR_g66144 Chara braunii HOM05D003481 ORTHO05D004001 1.0e-17 94.4 132 47.7
Aa31sc55G50 Aethionema arabicum HOM05D003481 ORTHO05D004001 2.5e-16 89.7 76 63.2
vmacro19556 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 3.6e-15 85.9 74 62.2
AagrBONN_evm.TU.Sc2ySwM_117.2303 Anthoceros agrestis HOM05D003481 ORTHO05D004001 2.3e-14 83.2 111 46.8
Manes.03G070216 Manihot esculenta HOM05D003481 ORTHO05D004001 2.0e-13 80.1 58 67.2
vmacro19693 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 3.7e-12 75.9 55 69.1
vmacro16031 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 4.1e-11 72.4 167 33.5
arahy.Tifrunner.gnm1.ann1.A6QARX Arachis hypogaea HOM05D003481 ORTHO05D004001 2.7e-10 69.7 58 58.6
arahy.Tifrunner.gnm1.ann1.40643C Arachis hypogaea HOM05D003481 ORTHO05D004001 3.0e-09 66.2 60 56.7
vmacro19694 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 6.6e-09 65.1 48 68.8
Cre02.g087551 Chlamydomonas reinhardtii HOM05D003481 ORTHO05D004001 2.4e-06 56.6 122 35.2


User provided reference genes

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