Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0024961g0010 Nicotiana tabacum HOM05D003245 ORTHO05D004125 3.1e-75 285.0 143 100.0
Nitab4.5_0004307g0020 Nicotiana tabacum HOM05D003245 ORTHO05D004125 1.7e-65 252.7 142 89.4
Nitab4.5_0025199g0010 Nicotiana tabacum HOM05D003245 ORTHO05D004125 5.0e-65 251.1 135 94.8
Nitab4.5_0026144g0010 Nicotiana tabacum HOM05D003245 ORTHO05D004125 1.4e-64 249.6 143 87.4
Nitab4.5_0006624g0030 Nicotiana tabacum HOM05D003245 ORTHO05D004125 1.6e-55 219.5 143 80.4
Solyc07g018210.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 5.7e-53 211.1 146 76.7
Solyc07g018220.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 5.7e-53 211.1 146 76.7
Sopen07g007320 Solanum pennellii HOM05D003245 ORTHO05D004125 2.8e-52 208.8 146 76.0
Sopen07g007330 Solanum pennellii HOM05D003245 ORTHO05D004125 2.8e-52 208.8 146 76.0
CAN.G32.5 Capsicum annuum HOM05D003245 ORTHO05D004125 3.1e-51 205.3 148 75.0
CAN.G5.10 Capsicum annuum HOM05D003245 ORTHO05D004125 5.3e-51 204.5 149 75.2
Peaxi162Scf00231g00812 Petunia axillaris HOM05D003245 ORTHO05D004125 3.8e-49 198.4 149 73.2
Dinv42729 Davidia involucrata HOM05D003245 ORTHO05D004125 9.4e-48 193.7 147 73.5
Dinv43372 Davidia involucrata HOM05D003245 ORTHO05D004125 9.4e-48 193.7 147 73.5
PGSC0003DMG400002422 Solanum tuberosum HOM05D003245 ORTHO05D004125 8.0e-47 190.7 146 72.6
PGSC0003DMG401002421 Solanum tuberosum HOM05D003245 ORTHO05D004125 1.8e-46 189.5 145 70.3
Nitab4.5_0007820g0020 Nicotiana tabacum HOM05D003245 ORTHO05D004125 4.0e-46 188.3 145 71.7
Hma1.2p1_2478F.1_g322920 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 2.0e-45 186.0 148 70.3
Oeu049685.1 Olea europaea HOM05D003245 ORTHO05D004125 4.4e-45 184.9 148 69.6
Sopen07g007350 Solanum pennellii HOM05D003245 ORTHO05D004125 7.5e-45 184.1 147 70.7
ClCG01G005520 Citrullus lanatus HOM05D003245 ORTHO05D004125 9.8e-45 183.7 147 70.1
Ciclev10009141m.g Citrus clementina HOM05D003245 ORTHO05D004125 1.7e-44 183.0 143 69.9
MELO3C005378.2 Cucumis melo HOM05D003245 ORTHO05D004125 2.8e-44 182.2 147 68.7
CANSAT11G2281 Cannabis sativa HOM05D003245 ORTHO05D004125 3.7e-44 181.8 147 66.7
CsaV3_5G005750 Cucumis sativus L. HOM05D003245 ORTHO05D004125 3.1e-43 178.7 147 68.0
CARHR109400 Cardamine hirsuta HOM05D003245 ORTHO05D004125 4.1e-43 178.3 153 66.0
Hma1.2p1_1710F.1_g298640 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 4.1e-43 178.3 143 69.2
Sed0003509 Sechium edule HOM05D003245 ORTHO05D004125 4.1e-43 178.3 147 70.1
THA.LOC104819980 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 5.4e-43 177.9 149 68.5
Cpa.g.sc95.57 Carica papaya HOM05D003245 ORTHO05D004125 9.1e-43 177.2 147 67.3
Carub.0007s1035 Capsella rubella HOM05D003245 ORTHO05D004125 2.7e-42 175.6 149 65.8
AT2G18840 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 7.7e-42 174.1 152 66.4
THA.LOC104803937 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 1.0e-41 173.7 151 66.2
Aa31LG8G15930 Aethionema arabicum HOM05D003245 ORTHO05D004125 1.3e-41 173.3 152 65.8
Potri.006G169200 Populus trichocarpa HOM05D003245 ORTHO05D004125 1.7e-41 172.9 149 68.5
TWI12G0523 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 1.7e-41 172.9 151 66.2
Potri.018G093800 Populus trichocarpa HOM05D003245 ORTHO05D004125 2.3e-41 172.6 148 67.6
TWI12G0425 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 2.3e-41 172.6 146 67.1
TAR626G1505 Trochodendron aralioides HOM05D003245 ORTHO05D004125 2.9e-41 172.2 147 66.7
Lalb_Chr07g0180421 Lupinus albus HOM05D003245 ORTHO05D004125 3.8e-41 171.8 146 65.8
AL3G53110 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 6.5e-41 171.0 148 66.2
Prupe.1G086600 Prunus persica HOM05D003245 ORTHO05D004125 6.5e-41 171.0 145 66.2
Carub.0003s3307 Capsella rubella HOM05D003245 ORTHO05D004125 8.6e-41 170.6 155 64.5
CiPaw.08G036800 Carya illinoinensis HOM05D003245 ORTHO05D004125 1.5e-40 169.9 147 66.7
Lj4g0022126 Lotus japonicus HOM05D003245 ORTHO05D004125 1.5e-40 169.9 143 63.6
PSO675G6578 Papaver somniferum HOM05D003245 ORTHO05D004125 1.9e-40 169.5 153 62.7
PSO541G0246 Papaver somniferum HOM05D003245 ORTHO05D004125 2.5e-40 169.1 153 62.7
Sed0004345 Sechium edule HOM05D003245 ORTHO05D004125 4.2e-40 168.3 145 67.6
Sp7g28140 Schrenkiella parvula HOM05D003245 ORTHO05D004125 1.6e-39 166.4 153 62.1
AT4G30260 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 3.6e-39 165.2 148 63.5
Sabra18G0080700 Salix brachista HOM05D003245 ORTHO05D004125 6.1e-39 164.5 148 65.5
Dinv41253 Davidia involucrata HOM05D003245 ORTHO05D004125 8.0e-39 164.1 142 64.8
Lsat_1_v5_gn_7_54500 Lactuca sativa HOM05D003245 ORTHO05D004125 8.0e-39 164.1 151 64.2
Lj7A472T61 Lonicera japonica HOM05D003245 ORTHO05D004125 8.0e-39 164.1 146 64.4
TAR383G0562 Trochodendron aralioides HOM05D003245 ORTHO05D004125 8.0e-39 164.1 147 65.3
CARHR238170 Cardamine hirsuta HOM05D003245 ORTHO05D004125 1.0e-38 163.7 153 62.7
HanXRQChr09g0245001 Helianthus annuus HOM05D003245 ORTHO05D004125 1.0e-38 163.7 145 62.8
BcaC01g01161 Brassica carinata HOM05D003245 ORTHO05D004125 1.8e-38 162.9 148 62.2
PGR102G0922 Punica granatum HOM05D003245 ORTHO05D004125 1.8e-38 162.9 147 61.9
Thhalv10025913m.g Eutrema salsugineum HOM05D003245 ORTHO05D004125 2.3e-38 162.5 153 61.4
HanXRQChr09g0254481 Helianthus annuus HOM05D003245 ORTHO05D004125 2.3e-38 162.5 143 65.7
SalBow6G0700 Salvia bowleyana HOM05D003245 ORTHO05D004125 2.3e-38 162.5 147 59.9
SalBow6G1711 Salvia bowleyana HOM05D003245 ORTHO05D004125 2.3e-38 162.5 147 59.9
BraA08t33893Z Brassica rapa HOM05D003245 ORTHO05D004125 3.0e-38 162.2 148 62.2
Manes.06G024000 Manihot esculenta HOM05D003245 ORTHO05D004125 4.0e-38 161.8 148 64.9
Actinidia35994 Actinidia chinensis HOM05D003245 ORTHO05D004125 6.8e-38 161.0 147 66.0
A08p19320 Brassica napus HOM05D003245 ORTHO05D004125 6.8e-38 161.0 148 61.5
CDE02G4007 Ceratophyllum demersum HOM05D003245 ORTHO05D004125 8.9e-38 160.6 147 61.9
EL10Ac8g19425 Beta vulgaris HOM05D003245 ORTHO05D004125 1.2e-37 160.2 146 65.1
BcaNung03004 Brassica carinata HOM05D003245 ORTHO05D004125 1.2e-37 160.2 154 61.0
Sabra06G0130400 Salix brachista HOM05D003245 ORTHO05D004125 3.4e-37 158.7 148 64.2
C03p88780 Brassica napus HOM05D003245 ORTHO05D004125 4.4e-37 158.3 152 63.2
Sp3g32300 Schrenkiella parvula HOM05D003245 ORTHO05D004125 5.7e-37 157.9 151 61.6
vmacro13120 Vaccinium macrocarpon HOM05D003245 ORTHO05D004125 7.5e-37 157.5 150 63.3
QL02p097606 Quercus lobata HOM05D003245 ORTHO05D004125 1.3e-36 156.8 152 61.8
RcHm_v2.0_Chr4g0402611 Rosa chinensis HOM05D003245 ORTHO05D004125 1.3e-36 156.8 148 62.8
MSTRG.19702 Avicennia marina HOM05D003245 ORTHO05D004125 1.7e-36 156.4 160 58.8
SGA_v2.0_scaffold66G22455 Striga asiatica HOM05D003245 ORTHO05D004125 1.7e-36 156.4 151 61.6
TPR.G5416 Trifolium pratense HOM05D003245 ORTHO05D004125 1.7e-36 156.4 152 59.9
Aqoxy1G01965 Aquilegia oxysepala HOM05D003245 ORTHO05D004125 4.9e-36 154.8 158 58.9
AL7G21890 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 4.9e-36 154.8 150 60.0
Atru.chr7.659 Acer truncatum HOM05D003245 ORTHO05D004125 6.3e-36 154.5 152 62.5
GSVIVG01029199001 Vitis vinifera HOM05D003245 ORTHO05D004125 6.3e-36 154.5 146 62.3
CiPaw.07G191800 Carya illinoinensis HOM05D003245 ORTHO05D004125 8.3e-36 154.1 147 61.9
Migut.J01473 Erythranthe guttata HOM05D003245 ORTHO05D004125 1.1e-35 153.7 148 62.2
Migut.K00245 Erythranthe guttata HOM05D003245 ORTHO05D004125 1.1e-35 153.7 154 59.1
Manes.14G150500 Manihot esculenta HOM05D003245 ORTHO05D004125 1.1e-35 153.7 146 62.3
Rhsim01G0005500 Rhododendron simsii HOM05D003245 ORTHO05D004125 1.8e-35 152.9 147 62.6
BcaC09g51810 Brassica carinata HOM05D003245 ORTHO05D004125 2.4e-35 152.5 146 61.0
C01p08790 Brassica napus HOM05D003245 ORTHO05D004125 2.4e-35 152.5 146 61.0
BolC1t00869H Brassica oleracea HOM05D003245 ORTHO05D004125 2.4e-35 152.5 146 61.0
CSS0020996 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 5.4e-35 151.4 146 60.3
AUR62040631 Chenopodium quinoa HOM05D003245 ORTHO05D004125 7.0e-35 151.0 147 61.2
Duzib160G0168 Durio zibethinus HOM05D003245 ORTHO05D004125 9.2e-35 150.6 146 61.0
CSS0017554 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 1.2e-34 150.2 146 59.6
MBI14_g17360_MAGBIO Magnolia biondii HOM05D003245 ORTHO05D004125 1.2e-34 150.2 146 57.5
Ca_21218_v3 Cicer arietinum L. HOM05D003245 ORTHO05D004125 1.6e-34 149.8 146 60.3
DCAR_014704 Daucus carota HOM05D006247 ORTHO05D007684 2.0e-34 149.4 138 59.4
BraA01t00734Z Brassica rapa HOM05D003245 ORTHO05D004125 2.7e-34 149.1 146 61.0
Ah.08g212150 Amaranthus hybridus HOM05D003245 ORTHO05D004125 3.5e-34 148.7 151 60.9
BolC3t21189H Brassica oleracea HOM05D003245 ORTHO05D004125 3.5e-34 148.7 148 59.5
Hund22399 Selenicereus undatus HOM05D003245 ORTHO05D004125 4.5e-34 148.3 153 58.8
Solyc07g018230.2 Solanum lycopersicum HOM05D003245 ORTHO05D004125 4.5e-34 148.3 139 62.6
FvH4_4g09840 Fragaria vesca HOM05D003245 ORTHO05D004125 7.8e-34 147.5 145 59.3
FAN12G1523 Fragaria x ananassa HOM05D003245 ORTHO05D004125 7.8e-34 147.5 145 59.3
FAN12G3343 Fragaria x ananassa HOM05D003245 ORTHO05D004125 7.8e-34 147.5 145 59.3
FAN22G0867 Fragaria x ananassa HOM05D003245 ORTHO05D004125 2.3e-33 146.0 142 59.9
Medtr4g128290 Medicago truncatula HOM05D003245 ORTHO05D004125 2.3e-33 146.0 148 58.1
Cc06_g13310 Coffea canephora HOM05D003245 ORTHO05D004125 2.9e-33 145.6 140 62.1
Lsat_1_v5_gn_8_67041 Lactuca sativa HOM05D003245 ORTHO05D004125 2.9e-33 145.6 152 56.6
Duzib192G0054 Durio zibethinus HOM05D003245 ORTHO05D004125 3.8e-33 145.2 145 57.9
A01p07880 Brassica napus HOM05D003245 ORTHO05D004125 6.6e-33 144.4 146 58.9
ECA236G4509 Erigeron canadensis HOM05D003245 ORTHO05D004125 1.1e-32 143.7 153 62.1
ECA240G1971 Erigeron canadensis HOM05D003245 ORTHO05D004125 1.1e-32 143.7 150 58.7
HanXRQChr12g0365401 Helianthus annuus HOM05D003245 ORTHO05D004125 1.5e-32 143.3 151 59.6
MSTRG.26224 Avicennia marina HOM05D003245 ORTHO05D004125 1.9e-32 142.9 152 56.6
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 1.9e-32 142.9 146 58.2
Os01g0867700 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 2.5e-32 142.5 144 59.0
Thecc.06G060900 Theobroma cacao HOM05D003245 ORTHO05D004125 2.5e-32 142.5 147 57.8
ATR0580G426 Amborella trichopoda HOM05D003245 ORTHO05D004125 4.3e-32 141.7 150 56.0
Duzib235G0677 Durio zibethinus HOM05D003245 ORTHO05D004125 5.6e-32 141.4 146 57.5
SGA_v2.0_scaffold12G06064 Striga asiatica HOM05D003245 ORTHO05D004125 5.6e-32 141.4 142 57.0
SGA_v2.0_scaffold17G07907 Striga asiatica HOM05D003245 ORTHO05D004125 5.6e-32 141.4 147 56.5
arahy.Tifrunner.gnm1.ann1.6TSM6Q Arachis hypogaea HOM05D003245 ORTHO05D004125 1.2e-31 140.2 144 56.2
arahy.Tifrunner.gnm1.ann1.LWG93W Arachis hypogaea HOM05D003245 ORTHO05D004125 1.2e-31 140.2 144 56.2
Gohir.D05G114100 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.6e-31 139.8 146 57.5
Gorai.009G118100 Gossypium raimondii HOM05D003245 ORTHO05D004125 1.6e-31 139.8 146 57.5
Lj9C686G6 Lonicera japonica HOM05D003245 ORTHO05D004125 1.6e-31 139.8 141 61.7
HPP92_003207 Vanilla planifolia HOM05D003245 ORTHO05D004125 1.6e-31 139.8 153 54.9
MBI16_g35929_MAGBIO Magnolia biondii HOM05D000126 ORTHO05D000085 2.1e-31 139.4 146 57.5
Gohir.A05G113700 Gossypium hirsutum HOM05D003245 ORTHO05D004125 8.0e-31 137.5 146 56.8
Cfa013513 Carpinus fangiana HOM05D003245 ORTHO05D004125 2.3e-30 136.0 149 55.7
Phvul.003G146500 Phaseolus vulgaris HOM05D003245 ORTHO05D004125 2.3e-30 136.0 147 57.1
MSTRG.6209 Avicennia marina HOM05D003245 ORTHO05D004125 3.0e-30 135.6 161 50.9
BcaB03g12640 Brassica carinata HOM05D003245 ORTHO05D004125 4.0e-30 135.2 156 54.5
Glyma.17G064000 Glycine max HOM05D003245 ORTHO05D004125 4.0e-30 135.2 147 56.5
Haze_22109 Corylus avellana HOM05D003245 ORTHO05D004125 5.2e-30 134.8 149 56.4
VMungo1215G1658 Vigna mungo HOM05D003245 ORTHO05D004125 6.8e-30 134.4 147 57.8
Sc18g0007470 Simmondsia chinensis HOM05D003245 ORTHO05D004125 2.0e-29 132.9 145 57.2
Lalb_Chr12g0199351 Lupinus albus HOM05D003245 ORTHO05D004125 4.4e-29 131.7 144 57.6
MD13G1256000 Malus domestica HOM05D003245 ORTHO05D004125 4.4e-29 131.7 145 54.5
MD13G1256300 Malus domestica HOM05D003245 ORTHO05D004125 4.4e-29 131.7 145 54.5
FAN07G1981 Fragaria x ananassa HOM05D003245 ORTHO05D004125 5.8e-29 131.3 194 44.8
SEGI_27058 Sequoiadendron giganteum HOM05D003245 ORTHO05D004125 5.8e-29 131.3 152 53.9
unitig_22.g6851 Utricularia gibba HOM05D003245 ORTHO05D004125 4.9e-28 128.3 143 55.9
Oeu042156.1 Olea europaea HOM05D003245 ORTHO05D004125 6.4e-28 127.9 150 53.3
Glyma.13G096100 Glycine max HOM05D003245 ORTHO05D004125 7.0e-27 124.4 149 53.7
Zm00001eb366670 Zea mays HOM05D003245 ORTHO05D004125 7.0e-27 124.4 144 55.6
Zm00001eb146670 Zea mays HOM05D003245 ORTHO05D004125 4.6e-26 121.7 144 52.8
CDE04G1421 Ceratophyllum demersum HOM05D000126 ORTHO05D000085 1.7e-25 119.8 146 50.0
HPP92_001091 Vanilla planifolia HOM05D003245 ORTHO05D004125 1.7e-25 119.8 157 49.7
SalBow1G7127 Salvia bowleyana HOM05D003245 ORTHO05D004125 2.1e-23 112.8 143 51.0
unitig_8.g3424 Utricularia gibba HOM05D003245 ORTHO05D004125 8.0e-23 110.9 142 52.1
Os05g0437500 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 5.2e-22 108.2 147 50.3
Zm00001eb289090 Zea mays HOM05D003245 ORTHO05D004125 8.9e-22 107.5 109 56.9
Gohir.A10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.9e-16 89.7 146 45.9
Gorai.011G003600 Gossypium raimondii HOM05D003245 ORTHO05D004125 1.9e-16 89.7 147 45.6
RcHm_v2.0_Chr5g0045341 Rosa chinensis HOM05D003245 ORTHO05D004125 1.9e-16 89.7 136 46.3
Gohir.D10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 2.5e-16 89.4 146 45.9
SMO146G0102 Selaginella moellendorffii HOM05D003245 ORTHO05D004125 2.5e-16 89.4 150 40.7
Dinv23253 Davidia involucrata HOM05D003245 ORTHO05D004125 7.3e-16 87.8 105 54.3
Pp3c7_23160 Physcomitrium patens HOM05D003245 ORTHO05D004125 4.7e-15 85.1 144 41.0
Pp3c7_23220 Physcomitrium patens HOM05D003245 ORTHO05D004125 4.7e-15 85.1 144 41.0
Pp3c11_7990 Physcomitrium patens HOM05D003245 ORTHO05D004125 1.1e-14 84.0 144 43.1
Mapoly0113s0010 Marchantia polymorpha HOM05D003245 ORTHO05D004125 1.4e-14 83.6 152 38.8
GSVIVG01016111001 Vitis vinifera HOM05D003245 ORTHO05D004125 6.8e-14 81.3 108 46.3
CBR_g23822 Chara braunii HOM05D003245 ORTHO05D004125 8.9e-14 80.9 131 45.0
C01p16400 Brassica napus HOM05D003245 ORTHO05D017662 1.5e-13 80.1 53 71.7
Nitab4.5_0024961g0020 Nicotiana tabacum HOM05D003245 ORTHO05D049326 1.2e-10 70.5 44 68.2
RcHm_v2.0_Chr2g0110911 Rosa chinensis HOM05D003245 ORTHO05D004125 3.9e-09 65.5 148 38.5
HPP92_001991 Vanilla planifolia HOM05D000154 ORTHO05D000092 3.3e-08 62.4 167 35.9
Psat4g011760 Pisum sativum HOM05D003245 ORTHO05D004125 3.6e-07 58.9 42 69.0
C09p29690 Brassica napus HOM05D025430 ORTHO05D020083 1.1e-06 57.4 95 43.2
BolC9t56073H Brassica oleracea HOM05D003245 ORTHO05D004125 1.1e-06 57.4 122 41.0
Nitab4.5_0006624g0010 Nicotiana tabacum HOM05D003245 ORTHO05D049326 4.0e-06 55.5 38 63.2


User provided reference genes

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