Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 8.1e-67 256.9 127 100.0
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 1.2e-65 253.1 127 98.4
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 6.6e-61 237.3 127 89.8
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 8.6e-61 236.9 127 89.8
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 1.6e-59 232.6 127 87.4
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 4.7e-59 231.1 127 86.6
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 1.1e-58 229.9 127 86.6
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 1.2e-57 226.5 127 87.4
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 3.4e-57 224.9 127 85.0
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 3.8e-56 221.5 127 81.9
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 1.4e-55 219.5 127 81.9
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.4e-55 218.8 127 81.1
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 2.4e-55 218.8 127 80.3
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 3.2e-55 218.4 127 78.7
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 5.4e-55 217.6 117 89.7
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.1e-55 217.2 127 79.5
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.6e-54 216.1 127 79.5
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 2.1e-54 215.7 127 79.5
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 2.7e-54 215.3 127 78.0
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 4.6e-54 214.5 127 79.5
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 4.6e-54 214.5 127 79.5
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 4.6e-54 214.5 127 76.4
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 7.8e-54 213.8 127 79.5
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 7.8e-54 213.8 127 78.0
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 7.8e-54 213.8 127 78.0
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 1.3e-53 213.0 127 78.7
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.3e-53 212.2 127 79.5
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 2.3e-53 212.2 127 78.7
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 3.0e-53 211.8 127 75.6
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 3.0e-53 211.8 127 79.5
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 3.0e-53 211.8 127 79.5
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 3.0e-53 211.8 127 78.0
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 3.9e-53 211.5 127 79.5
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 3.9e-53 211.5 127 77.2
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 6.6e-53 210.7 127 74.8
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 1.1e-52 209.9 127 76.4
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 1.5e-52 209.5 127 75.6
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 1.9e-52 209.1 127 78.0
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 3.3e-52 208.4 127 74.8
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 3.3e-52 208.4 127 74.8
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.3e-52 208.0 127 73.2
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 5.6e-52 207.6 127 73.2
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 5.6e-52 207.6 146 70.5
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 5.6e-52 207.6 127 77.2
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 7.3e-52 207.2 127 74.8
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 7.3e-52 207.2 127 73.2
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 9.6e-52 206.8 127 74.8
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 9.6e-52 206.8 127 76.4
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 1.6e-51 206.1 127 74.0
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 4.7e-51 204.5 127 73.2
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.8e-50 202.6 127 74.0
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 1.8e-50 202.6 127 74.8
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.8e-50 202.6 125 72.8
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 2.4e-50 202.2 124 77.4
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.1e-50 201.8 128 75.0
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.1e-50 201.8 128 75.0
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 4.0e-50 201.4 127 74.0
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 4.0e-50 201.4 127 75.6
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 4.0e-50 201.4 127 72.4
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 4.0e-50 201.4 127 74.8
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 4.0e-50 201.4 127 72.4
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 4.0e-50 201.4 127 73.2
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 5.2e-50 201.1 124 76.6
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 6.9e-50 200.7 127 74.0
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 9.0e-50 200.3 127 73.2
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.2e-49 199.9 127 72.4
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 1.2e-49 199.9 127 71.7
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 1.2e-49 199.9 127 70.9
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 2.0e-49 199.1 124 71.0
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 2.0e-49 199.1 127 73.2
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.0e-49 199.1 127 71.7
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.6e-49 198.7 127 71.7
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 3.4e-49 198.4 127 74.8
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 9.9e-49 196.8 127 73.2
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 4.9e-48 194.5 127 73.2
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 6.4e-48 194.1 127 72.4
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 8.4e-48 193.7 127 72.4
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 1.1e-47 193.4 126 73.0
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 1.1e-47 193.4 125 74.4
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 1.4e-47 193.0 126 73.0
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 1.9e-47 192.6 126 72.2
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 1.9e-47 192.6 126 72.2
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.4e-47 192.2 127 74.8
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.2e-47 191.8 127 70.1
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.2e-47 191.8 127 70.1
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 4.2e-47 191.4 127 70.1
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 4.2e-47 191.4 127 70.9
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 5.4e-47 191.0 127 69.3
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 7.1e-47 190.7 127 70.1
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 7.1e-47 190.7 127 70.1
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 1.2e-46 189.9 127 68.5
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.6e-46 189.5 127 69.3
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 2.1e-46 189.1 119 75.6
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 2.1e-46 189.1 127 69.3
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 3.5e-46 188.3 124 71.8
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 3.5e-46 188.3 126 71.4
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.5e-46 188.3 127 69.3
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 4.6e-46 188.0 126 70.6
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 4.6e-46 188.0 124 71.0
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.8e-46 187.2 127 72.4
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 3.0e-45 185.3 117 72.6
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 2.5e-44 182.2 126 68.3
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 3.3e-44 181.8 126 67.5
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 3.3e-44 181.8 126 68.3
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 7.3e-44 180.6 127 66.9
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 1.3e-43 179.9 126 67.5
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 6.2e-43 177.6 186 51.6
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 6.2e-43 177.6 119 69.7
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.4e-42 176.4 126 65.1
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 3.1e-42 175.3 126 64.3
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 1.2e-41 173.3 127 62.2
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 1.5e-41 172.9 119 68.1
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 3.4e-41 171.8 126 64.3
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 7.6e-41 170.6 124 66.1
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 1.7e-40 169.5 126 65.9
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.2e-40 169.1 128 65.6
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.9e-39 166.0 137 62.8
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 3.2e-39 165.2 114 70.2
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 4.6e-38 161.4 127 63.0
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 7.9e-38 160.6 99 77.8
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 2.5e-36 155.6 103 69.9
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 4.3e-36 154.8 162 49.4
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 4.8e-35 151.4 106 66.0
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 1.1e-34 150.2 106 65.1
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 4.0e-34 148.3 127 56.7
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 1.5e-33 146.4 91 76.9
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.6e-33 145.6 104 66.3
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 4.5e-33 144.8 109 68.8
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 3.8e-32 141.7 124 55.6
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 1.1e-28 130.2 119 49.6
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 1.8e-26 122.9 127 48.0
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 3.4e-25 118.6 124 50.0
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.7e-24 116.3 134 47.8
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.8e-18 96.3 125 45.6
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 2.4e-18 95.9 56 76.8
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 7.6e-17 90.9 112 41.1
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 1.3e-16 90.1 126 38.9
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 8.5e-16 87.4 61 67.2
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 8.5e-16 87.4 61 67.2
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.2e-14 83.6 50 74.0
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 3.3e-12 75.5 116 36.2
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 8.5e-08 60.8 40 67.5
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.9e-07 59.7 40 65.0


User provided reference genes

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