Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.2e-135 486.5 250 100.0
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.3e-100 367.5 243 82.7
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.6e-97 357.8 214 88.8
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 2.2e-76 289.7 308 57.5
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.4e-75 287.0 304 57.2
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 7.1e-75 284.6 279 59.9
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.7e-73 277.7 271 61.3
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.5e-72 276.2 306 55.9
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 9.6e-72 274.2 291 58.1
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 2.6e-69 266.2 271 58.7
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 3.5e-66 255.8 217 64.5
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 9.6e-64 247.7 269 56.1
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 8.1e-63 244.6 295 50.2
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 1.1e-62 244.2 240 57.5
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 1.4e-62 243.8 265 54.7
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 1.4e-62 243.8 247 55.9
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 2.4e-62 243.0 278 54.0
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 6.9e-62 241.5 264 53.4
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 4.5e-61 238.8 271 52.0
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 7.6e-61 238.0 213 59.2
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 1.7e-60 236.9 266 53.4
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 2.9e-60 236.1 295 49.2
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 8.4e-60 234.6 242 56.2
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 1.1e-59 234.2 230 57.0
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 1.1e-59 234.2 298 50.0
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 1.9e-59 233.4 266 52.6
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 3.2e-59 232.6 281 50.2
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 4.2e-59 232.3 271 50.9
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 5.5e-59 231.9 310 48.1
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 9.3e-59 231.1 223 56.5
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 9.3e-59 231.1 259 52.1
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 9.3e-59 231.1 221 55.7
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.2e-58 230.7 257 52.9
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.2e-58 230.7 272 50.7
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 1.2e-58 230.7 269 50.9
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 1.2e-58 230.7 269 50.6
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 1.2e-58 230.7 260 54.2
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 2.1e-58 229.9 268 51.5
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 2.1e-58 229.9 272 50.4
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 2.7e-58 229.6 277 52.0
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 2.7e-58 229.6 270 50.0
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 3.5e-58 229.2 268 51.1
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 4.6e-58 228.8 289 48.4
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 4.6e-58 228.8 272 50.0
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 6.0e-58 228.4 274 51.1
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 7.9e-58 228.0 213 59.6
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 1.3e-57 227.3 273 49.5
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 1.8e-57 226.9 258 50.0
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 3.9e-57 225.7 268 50.0
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 5.1e-57 225.3 273 49.8
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 5.1e-57 225.3 268 50.0
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 8.7e-57 224.6 273 49.1
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 8.7e-57 224.6 272 51.1
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 1.1e-56 224.2 272 49.6
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 3.3e-56 222.6 273 49.5
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 5.7e-56 221.9 309 46.6
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 7.4e-56 221.5 275 49.5
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.3e-55 220.7 258 50.4
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 1.6e-55 220.3 277 46.9
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 1.6e-55 220.3 265 49.8
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 2.1e-55 219.9 294 46.6
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.1e-55 219.9 314 46.2
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 2.8e-55 219.5 272 48.9
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 2.8e-55 219.5 270 47.8
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 2.8e-55 219.5 271 49.1
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 3.7e-55 219.2 316 46.5
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 3.7e-55 219.2 275 49.5
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 4.8e-55 218.8 264 50.4
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 6.3e-55 218.4 269 49.4
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 1.1e-54 217.6 250 49.6
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 1.4e-54 217.2 305 44.9
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 2.4e-54 216.5 255 50.2
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.4e-54 216.5 314 45.9
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 3.1e-54 216.1 269 48.0
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 3.4e-53 212.6 281 46.3
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 7.6e-53 211.5 238 51.7
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.1e-51 207.6 271 46.9
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 5.5e-51 205.3 309 43.7
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 7.2e-51 204.9 309 43.7
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 1.2e-50 204.1 304 44.7
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 1.6e-50 203.8 328 41.5
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 2.7e-50 203.0 174 64.9
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.0e-49 201.1 256 47.7
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 1.3e-49 200.7 284 44.0
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 1.8e-49 200.3 163 65.6
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 2.3e-49 199.9 162 66.7
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 3.0e-49 199.5 223 51.6
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.9e-49 199.1 312 42.6
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 5.1e-49 198.7 187 58.8
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 6.7e-49 198.4 324 41.4
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 8.7e-49 198.0 222 53.6
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 4.3e-48 195.7 317 41.0
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 5.7e-48 195.3 242 47.5
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 1.6e-47 193.7 221 49.3
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.7e-47 192.6 187 58.8
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 8.2e-47 191.4 270 44.4
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 2.4e-46 189.9 288 42.0
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 4.1e-46 189.1 269 44.6
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 9.1e-46 188.0 282 42.6
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 4.5e-45 185.7 233 45.1
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 2.5e-43 179.9 223 48.4
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 7.2e-43 178.3 213 48.4
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 2.1e-42 176.8 226 47.8
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 4.6e-42 175.6 145 68.3
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 7.9e-42 174.9 137 72.3
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 5.1e-41 172.2 161 57.1
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 1.7e-39 167.2 253 42.3
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 4.8e-39 165.6 213 47.9
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 8.2e-39 164.9 144 65.3
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.1e-38 164.5 144 64.6
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 3.1e-38 162.9 214 45.8
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 3.1e-38 162.9 213 46.5
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 3.1e-38 162.9 210 47.6
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 4.1e-38 162.5 214 45.8
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 5.3e-38 162.2 252 40.9
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 4.5e-37 159.1 265 39.2
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 5.9e-37 158.7 227 41.4
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.0e-36 155.6 116 74.1
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 6.1e-34 148.7 269 38.3
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 1.4e-33 147.5 161 53.4
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 3.0e-33 146.4 204 43.1
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 2.8e-31 139.8 158 48.7
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 3.1e-30 136.3 163 45.4
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.2e-29 134.4 139 54.0
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 1.0e-28 131.3 127 60.6
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 2.2e-28 130.2 205 39.0
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 2.9e-28 129.8 126 56.3
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.5e-27 127.5 167 45.5
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.9e-27 127.1 167 44.9
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 2.3e-25 120.2 133 45.9
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 3.3e-24 116.3 147 49.7
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 4.4e-24 115.9 165 42.4
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 8.5e-20 101.7 134 41.0
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 8.5e-20 101.7 137 40.1
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 1.5e-19 100.9 120 55.0
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.5e-19 100.9 158 40.5
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 1.6e-18 97.4 255 30.2
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 6.1e-18 95.5 104 52.9
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 1.4e-17 94.4 82 57.3
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 8.8e-17 91.7 82 58.5
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 8.8e-17 91.7 82 58.5
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 6.1e-10 68.9 176 34.7
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 9.8e-08 61.6 41 68.3
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 1.3e-07 61.2 65 49.2
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 4.1e-06 56.2 52 51.9
FAN07G1695 Fragaria x ananassa HOM05D001353 ORTHO05D005187 4.1e-06 56.2 58 51.7
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 5.4e-06 55.8 28 89.3


User provided reference genes

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