Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.1e-234 816.2 423 100.0
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.1e-204 715.7 483 81.0
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 3.5e-175 618.6 449 75.9
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 4.0e-171 605.1 453 74.0
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 4.0e-163 578.6 466 70.6
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 4.5e-138 495.4 464 64.0
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 4.2e-136 488.8 428 67.5
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 4.4e-117 425.6 503 53.5
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 2.8e-116 422.9 472 54.9
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 6.5e-113 411.8 464 54.1
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 3.0e-110 402.9 452 54.9
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.3e-108 397.5 488 52.3
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 3.5e-106 389.4 452 53.1
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 3.5e-106 389.4 419 54.7
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 2.9e-105 386.3 450 50.7
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 1.5e-104 384.0 419 54.4
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 7.2e-104 381.7 480 48.8
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 4.7e-103 379.0 420 53.8
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 6.1e-103 378.6 434 51.2
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 1.8e-102 377.1 439 51.9
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 2.3e-102 376.7 439 51.7
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 1.2e-101 374.4 477 49.1
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.0e-101 373.6 424 52.8
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 3.4e-101 372.9 437 51.3
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 3.4e-101 372.9 427 52.0
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 4.4e-101 372.5 455 51.0
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 7.5e-101 371.7 380 56.3
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 2.8e-100 369.8 335 60.3
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 2.8e-100 369.8 427 52.2
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 3.7e-100 369.4 450 51.1
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 4.8e-100 369.0 424 53.3
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 8.3e-100 368.2 430 51.6
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.8e-99 367.1 411 54.0
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 1.8e-99 367.1 476 48.5
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 3.1e-99 366.3 373 56.6
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 7.0e-99 365.2 382 56.0
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.2e-98 364.4 424 52.6
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 1.6e-98 364.0 443 50.8
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 2.0e-98 363.6 450 48.7
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 2.0e-98 363.6 382 57.1
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 3.5e-98 362.8 481 48.0
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 7.7e-98 361.7 414 52.9
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 2.9e-97 359.8 491 48.5
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 5.0e-97 359.0 432 50.7
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 6.6e-97 358.6 449 49.2
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 1.5e-96 357.5 500 46.6
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 3.3e-96 356.3 366 56.8
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 4.2e-96 355.9 368 57.6
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 5.5e-96 355.5 323 60.1
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 7.2e-96 355.1 422 51.4
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 1.2e-95 354.4 336 58.6
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 1.2e-95 354.4 314 62.7
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 1.6e-95 354.0 356 56.5
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 1.6e-95 354.0 337 57.9
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 1.6e-95 354.0 468 47.6
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.4e-94 350.9 434 50.7
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 2.3e-94 350.1 400 53.0
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 4.0e-94 349.4 381 53.5
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 9.8e-93 344.7 350 57.7
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 2.4e-91 340.1 481 46.6
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 1.6e-90 337.4 337 56.4
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.0e-90 337.0 334 54.2
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 5.9e-90 335.5 334 53.9
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 7.8e-90 335.1 411 50.1
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 1.7e-89 334.0 440 47.0
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 2.3e-89 333.6 474 45.8
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 1.1e-88 331.3 504 45.8
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 1.5e-88 330.9 469 46.3
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 2.5e-88 330.1 471 46.5
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.2e-87 327.8 423 47.0
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 2.1e-87 327.0 417 47.7
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 1.0e-86 324.7 441 48.8
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 1.0e-86 324.7 428 49.8
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 5.2e-86 322.4 397 49.6
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.5e-85 320.9 324 56.2
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 9.8e-85 318.2 333 55.0
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 9.8e-85 318.2 427 47.3
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-83 314.7 397 49.1
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 1.4e-83 314.3 411 47.2
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 2.4e-83 313.5 401 48.4
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 3.0e-81 306.6 355 50.4
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 1.5e-80 304.3 385 46.8
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 2.8e-79 300.1 357 50.7
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 4.7e-79 299.3 285 62.1
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.4e-78 297.7 374 49.2
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 8.9e-78 295.0 441 41.0
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 2.0e-77 293.9 424 43.6
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 3.7e-76 289.7 322 51.6
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 1.9e-75 287.3 414 46.4
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 9.2e-75 285.0 259 64.5
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.6e-74 284.3 283 60.1
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 3.0e-73 280.0 326 49.1
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.5e-72 276.9 271 61.3
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 3.3e-72 276.6 466 43.1
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 6.2e-71 272.3 334 47.6
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 8.3e-68 261.9 278 55.0
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 8.3e-68 261.9 278 54.7
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 5.6e-64 249.2 236 59.7
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 4.6e-58 229.6 397 40.6
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 8.1e-55 218.8 295 45.4
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.4e-53 213.4 196 59.7
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 2.2e-52 210.7 335 39.1
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 6.4e-52 209.1 276 46.7
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 1.1e-51 208.4 159 69.2
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 4.2e-51 206.5 386 35.8
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 8.7e-49 198.7 260 50.4
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 1.7e-44 184.5 418 31.6
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 4.9e-44 183.0 161 62.1
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 2.5e-40 170.6 144 66.0
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 2.8e-39 167.2 157 58.6
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 2.0e-37 161.0 263 39.2
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 8.4e-36 155.6 263 37.6
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 8.4e-36 155.6 262 38.9
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.9e-35 154.5 143 61.5
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 1.9e-35 154.5 143 62.2
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 2.5e-35 154.1 217 47.9
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 4.2e-35 153.3 301 36.5
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 7.1e-35 152.5 161 52.8
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 1.2e-34 151.8 265 38.9
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-32 144.8 257 38.1
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.5e-32 144.8 273 36.6
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 5.6e-32 142.9 125 59.2
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 7.4e-32 142.5 127 62.2
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 6.2e-31 139.4 278 36.0
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 8.2e-31 139.0 278 34.5
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.1e-30 138.7 180 50.0
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 2.4e-30 137.5 313 34.5
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 6.9e-30 136.0 271 36.2
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 1.5e-29 134.8 156 45.5
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.5e-29 134.8 178 47.8
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 1.7e-28 131.3 260 31.9
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.2e-27 126.7 115 63.5
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 2.1e-26 124.4 104 62.5
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.8e-25 121.3 247 34.4
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.4e-22 111.7 197 37.1
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 1.3e-20 105.1 104 58.7
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 2.2e-20 104.4 155 41.3
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 5.5e-19 99.8 119 52.9
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 8.8e-17 92.4 384 25.5
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 3.3e-16 90.5 286 32.9
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 6.9e-14 82.8 160 35.0
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 1.2e-13 82.0 160 35.6
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 2.0e-13 81.3 239 31.0
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 4.2e-11 73.6 104 46.2
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 6.1e-10 69.7 170 26.5
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 7.9e-10 69.3 39 82.1
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 1.7e-07 61.6 35 82.9
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.4e-06 58.5 34 79.4


User provided reference genes

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