Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 8.0e-238 826.6 398 100.0
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 3.5e-225 784.6 404 94.6
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 1.1e-202 709.9 413 86.2
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 2.1e-193 679.1 399 83.2
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 5.1e-192 674.5 402 83.3
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 5.6e-191 671.0 402 82.8
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 2.2e-187 659.1 399 81.2
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 4.9e-187 657.9 413 79.7
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 3.5e-185 651.7 341 89.7
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 5.6e-183 644.4 395 80.3
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 3.6e-182 641.7 400 79.0
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 8.1e-182 640.6 396 78.8
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 8.1e-182 640.6 340 89.1
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.1e-181 640.2 346 86.4
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 1.4e-181 639.8 341 88.6
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 1.8e-181 639.4 421 77.2
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 2.4e-181 639.0 394 78.4
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 6.9e-181 637.5 394 79.9
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.0e-180 636.0 396 79.3
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 3.4e-180 635.2 397 78.8
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 4.5e-180 634.8 394 79.2
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 5.8e-180 634.4 397 77.8
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 5.8e-180 634.4 389 79.4
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 7.6e-180 634.0 340 88.5
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 9.9e-180 633.6 383 80.7
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 9.9e-180 633.6 439 72.9
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 1.7e-179 632.9 393 78.6
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 3.8e-179 631.7 380 80.8
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 6.4e-179 630.9 406 78.1
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 1.1e-178 630.2 406 77.6
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 1.4e-178 629.8 399 77.2
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.9e-178 629.4 394 78.4
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.9e-178 629.4 394 78.7
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 3.2e-178 628.6 402 76.4
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 7.1e-178 627.5 405 76.8
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 7.1e-178 627.5 398 77.6
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 7.1e-178 627.5 397 77.8
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 9.3e-178 627.1 389 79.2
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 1.2e-177 626.7 404 77.5
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 1.6e-177 626.3 340 85.6
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 2.7e-177 625.5 389 78.9
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 3.5e-177 625.2 406 75.6
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 4.6e-177 624.8 343 86.6
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 4.6e-177 624.8 396 77.3
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 4.6e-177 624.8 398 77.9
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 4.6e-177 624.8 391 77.5
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 4.6e-177 624.8 398 77.1
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 6.0e-177 624.4 403 75.9
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 7.9e-177 624.0 393 78.1
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 1.0e-176 623.6 400 77.2
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 1.3e-176 623.2 399 78.2
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 2.3e-176 622.5 393 78.1
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 2.3e-176 622.5 400 76.2
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 3.0e-176 622.1 394 77.9
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 3.0e-176 622.1 394 77.9
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.0e-176 622.1 407 76.7
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 3.0e-176 622.1 395 77.7
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 5.1e-176 621.3 400 77.0
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 6.7e-176 620.9 339 85.5
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 6.7e-176 620.9 395 77.5
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 8.7e-176 620.5 407 76.4
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 8.7e-176 620.5 391 78.3
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 1.1e-175 620.2 403 76.4
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 1.1e-175 620.2 404 75.5
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.5e-175 619.8 407 76.4
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 1.5e-175 619.8 397 78.1
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 1.9e-175 619.4 399 76.9
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.9e-175 619.4 407 76.2
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 1.9e-175 619.4 341 84.5
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.5e-175 619.0 402 76.9
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 5.6e-175 617.8 399 76.4
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 7.4e-175 617.5 394 76.6
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 7.4e-175 617.5 397 77.1
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 9.6e-175 617.1 402 76.6
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 1.6e-174 616.3 393 77.9
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 1.6e-174 616.3 409 74.3
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 2.1e-174 615.9 403 75.9
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 2.8e-174 615.5 398 75.9
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 4.8e-174 614.8 399 76.7
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 6.2e-174 614.4 405 77.3
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 6.2e-174 614.4 341 85.3
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 1.8e-173 612.8 354 82.5
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 9.0e-173 610.5 410 74.4
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 4.5e-172 608.2 404 75.5
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 7.6e-172 607.4 397 75.8
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 9.9e-172 607.1 369 79.4
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 1.7e-171 606.3 394 75.9
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 3.8e-171 605.1 394 76.4
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.4e-170 603.2 375 77.9
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 2.5e-170 602.4 403 73.9
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 7.1e-170 600.9 396 75.5
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 2.7e-169 599.0 458 67.2
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 3.5e-169 598.6 404 75.0
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 3.5e-169 598.6 341 82.1
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 7.9e-169 597.4 308 90.3
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 3.9e-168 595.1 345 80.0
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 1.1e-167 593.6 352 80.4
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 2.5e-167 592.4 350 80.9
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 9.6e-167 590.5 376 77.4
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 4.0e-165 585.1 304 89.5
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 9.0e-165 583.9 407 74.9
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.5e-164 581.6 302 88.4
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.5e-162 575.9 371 74.4
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 5.5e-162 574.7 380 75.3
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.2e-161 573.5 316 85.8
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 2.3e-160 569.3 377 75.6
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 6.7e-160 567.8 377 75.3
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.1e-159 567.0 385 75.1
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 3.7e-158 562.0 498 59.0
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 4.8e-158 561.6 408 71.8
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 3.1e-157 558.9 551 54.8
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 3.1e-157 558.9 396 72.0
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.2e-156 557.0 361 75.3
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 1.5e-156 556.6 563 56.1
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 3.2e-154 548.9 409 70.2
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 7.9e-153 544.3 401 69.3
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.3e-151 538.9 340 75.0
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.1e-149 531.9 341 73.3
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.0e-148 529.6 341 73.6
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 6.1e-145 518.1 338 72.8
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 6.7e-144 514.6 303 77.6
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 2.7e-137 492.7 243 90.5
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 3.8e-131 472.2 339 67.0
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 5.7e-127 458.4 332 68.1
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.2e-124 450.7 405 60.2
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 3.2e-122 442.6 308 66.6
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 5.2e-120 435.3 352 60.2
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.5e-111 407.1 282 71.6
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 7.0e-109 398.3 248 78.2
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 5.2e-104 382.1 212 84.4
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 5.8e-103 378.6 340 55.6
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.9e-101 373.6 392 51.3
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.7e-99 367.1 215 81.4
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.0e-91 341.3 254 67.7
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 6.2e-89 332.0 288 53.8
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 8.3e-86 321.6 203 74.9
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 3.1e-80 303.1 240 67.1
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 1.0e-67 261.5 127 93.7
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.1e-66 258.1 320 42.2
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 9.6e-66 255.0 356 40.2
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 2.1e-65 253.8 322 42.5
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 1.1e-64 251.5 343 39.7
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 6.9e-64 248.8 332 41.0
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.1e-58 231.5 320 39.1
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.5e-55 221.1 179 63.7
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 6.5e-54 215.7 325 38.5
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 3.3e-50 203.4 247 41.7
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 4.1e-48 196.4 115 82.6
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 2.7e-44 183.7 155 60.0
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 5.5e-29 132.9 92 68.5
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 6.3e-25 119.4 55 92.7
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 1.4e-24 118.2 155 45.8
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 1.8e-19 101.3 93 61.3
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 5.2e-19 99.8 62 75.8
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 2.0e-15 87.8 117 47.9
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 1.3e-14 85.1 49 77.6
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 2.7e-12 77.4 167 39.5
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 3.0e-11 73.9 33 87.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 3.7e-09 67.0 34 76.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 2.0e-07 61.2 31 80.6
HanXRQChr08g0215991 Helianthus annuus HOM05D033391 ORTHO05D220840 8.5e-06 55.8 27 85.2


User provided reference genes

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