Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 6.0e-20 99.8 46 100.0
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 3.1e-16 87.4 67 68.7
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.7e-14 81.6 67 65.7
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 5.4e-13 76.6 80 55.0
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 2.7e-12 74.3 80 53.8
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 2.7e-12 74.3 80 53.8
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 5.1e-11 70.1 68 58.8
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 8.6e-11 69.3 80 50.0
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 1.9e-10 68.2 80 52.5
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 3.3e-10 67.4 79 49.4
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 4.3e-10 67.0 80 51.2
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 4.3e-10 67.0 80 51.2
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 4.3e-10 67.0 80 47.5
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 4.3e-10 67.0 80 51.2
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 4.3e-10 67.0 80 51.2
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 5.6e-10 66.6 80 47.5
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 5.6e-10 66.6 79 49.4
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 5.6e-10 66.6 79 49.4
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 7.3e-10 66.2 80 47.5
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 7.3e-10 66.2 79 48.1
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 7.3e-10 66.2 80 51.2
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 7.3e-10 66.2 75 50.7
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 7.3e-10 66.2 79 48.1
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 7.3e-10 66.2 79 48.1
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 9.5e-10 65.9 80 50.0
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 9.5e-10 65.9 80 50.0
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 9.5e-10 65.9 71 53.5
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 9.5e-10 65.9 79 48.1
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.2e-09 65.5 80 50.0
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 1.2e-09 65.5 80 50.0
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 1.2e-09 65.5 78 47.4
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 1.2e-09 65.5 80 50.0
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 1.2e-09 65.5 80 50.0
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 1.2e-09 65.5 74 51.4
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 1.2e-09 65.5 74 51.4
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 1.6e-09 65.1 80 50.0
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 1.6e-09 65.1 80 50.0
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 1.6e-09 65.1 80 50.0
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 1.6e-09 65.1 80 50.0
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 1.6e-09 65.1 80 50.0
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 1.6e-09 65.1 80 50.0
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 1.6e-09 65.1 78 48.7
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 1.6e-09 65.1 80 50.0
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 2.1e-09 64.7 79 45.6
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 2.1e-09 64.7 74 50.0
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 2.1e-09 64.7 74 50.0
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 2.1e-09 64.7 74 50.0
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 2.1e-09 64.7 74 50.0
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 2.1e-09 64.7 74 50.0
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 2.1e-09 64.7 74 50.0
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 2.1e-09 64.7 74 50.0
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 2.1e-09 64.7 80 46.2
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 2.1e-09 64.7 78 47.4
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 2.1e-09 64.7 75 49.3
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 2.8e-09 64.3 75 49.3
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 2.8e-09 64.3 75 49.3
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 2.8e-09 64.3 79 45.6
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 2.8e-09 64.3 74 50.0
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 3.6e-09 63.9 80 48.8
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 3.6e-09 63.9 74 50.0
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 4.7e-09 63.5 80 48.8
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 4.7e-09 63.5 75 48.0
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 4.7e-09 63.5 75 49.3
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 4.7e-09 63.5 76 47.4
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 4.7e-09 63.5 76 47.4
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 4.7e-09 63.5 80 48.8
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 4.7e-09 63.5 75 48.0
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 6.2e-09 63.2 74 48.6
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 6.2e-09 63.2 74 48.6
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 6.2e-09 63.2 74 48.6
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 6.2e-09 63.2 74 48.6
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 6.2e-09 63.2 74 48.6
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 6.2e-09 63.2 78 44.9
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 6.2e-09 63.2 78 44.9
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 6.2e-09 63.2 74 48.6
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 8.1e-09 62.8 74 48.6
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 8.1e-09 62.8 74 48.6
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 8.1e-09 62.8 74 48.6
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 8.1e-09 62.8 74 48.6
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 8.1e-09 62.8 74 48.6
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 8.1e-09 62.8 74 48.6
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 8.1e-09 62.8 79 45.6
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.1e-08 62.4 74 47.3
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.1e-08 62.4 74 47.3
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.1e-08 62.4 80 47.5
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 1.1e-08 62.4 80 47.5
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.4e-08 62.0 73 47.9
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 1.4e-08 62.0 74 48.6
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 1.4e-08 62.0 74 48.6
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.8e-08 61.6 74 47.3
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 1.8e-08 61.6 75 48.0
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 1.8e-08 61.6 75 48.0
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 1.8e-08 61.6 75 48.0
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 1.8e-08 61.6 75 48.0
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 1.8e-08 61.6 80 45.0
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 1.8e-08 61.6 86 45.3
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 1.8e-08 61.6 74 47.3
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 2.4e-08 61.2 74 47.3
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 2.4e-08 61.2 75 45.3
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 2.4e-08 61.2 75 45.3
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 2.4e-08 61.2 74 47.3
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 2.4e-08 61.2 74 47.3
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 2.4e-08 61.2 80 47.5
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 5.2e-08 60.1 74 45.9
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 5.2e-08 60.1 68 48.5
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 5.2e-08 60.1 80 45.0
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 6.8e-08 59.7 74 45.9
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 8.9e-08 59.3 80 46.2
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 8.9e-08 59.3 74 47.3
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 1.2e-07 58.9 76 44.7
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.2e-07 58.9 76 44.7
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.2e-07 58.9 76 44.7
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.2e-07 58.9 76 44.7
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.2e-07 58.9 76 44.7
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 1.2e-07 58.9 76 44.7
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 2.0e-07 58.2 74 45.9
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 3.4e-07 57.4 74 43.2
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 3.4e-07 57.4 74 43.2
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 3.4e-07 57.4 80 43.8
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 1.3e-06 55.5 73 42.5
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.7e-06 55.1 74 41.9
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 1.7e-06 55.1 75 41.3
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 1.7e-06 55.1 79 41.8


User provided reference genes

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