Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 3.7e-166 588.2 308 100.0
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 1.0e-147 526.9 278 99.3
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 4.0e-128 461.8 280 87.5
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 2.4e-125 452.6 282 85.5
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 5.4e-125 451.4 268 87.3
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 7.1e-125 451.1 280 86.1
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 4.0e-120 435.3 280 83.9
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 3.8e-102 375.6 287 69.3
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 2.7e-100 369.4 281 70.1
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 6.0e-100 368.2 285 69.5
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 5.1e-99 365.2 279 71.0
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 2.1e-97 359.8 293 70.3
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 2.8e-97 359.4 288 67.7
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 1.4e-96 357.1 283 68.9
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 3.1e-96 355.9 283 68.6
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 6.9e-96 354.8 292 65.1
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 6.9e-96 354.8 289 66.8
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 6.9e-96 354.8 283 67.1
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 3.4e-95 352.4 283 67.1
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 7.6e-95 351.3 284 67.6
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 1.7e-94 350.1 285 64.9
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 2.2e-94 349.7 279 66.7
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.2e-94 349.7 275 65.5
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 1.1e-93 347.4 285 68.8
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 1.9e-93 346.7 279 65.2
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 1.9e-93 346.7 283 67.1
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 5.5e-93 345.1 283 67.5
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 1.2e-92 344.0 283 66.1
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 7.9e-92 341.3 287 64.5
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 1.5e-90 337.0 283 66.4
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.9e-90 336.7 284 65.1
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 5.6e-90 335.1 280 64.3
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 9.6e-90 334.3 280 67.1
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 4.8e-89 332.0 283 65.7
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 6.2e-89 331.6 284 67.3
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.1e-88 330.9 284 66.2
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 1.4e-88 330.5 283 63.6
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 1.8e-88 330.1 280 66.1
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 4.0e-88 328.9 286 64.0
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 9.0e-88 327.8 293 62.1
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 7.6e-87 324.7 282 64.2
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 2.2e-86 323.2 275 64.4
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 2.9e-86 322.8 277 65.0
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 4.9e-86 322.0 283 61.8
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 4.9e-86 322.0 276 64.5
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 4.9e-86 322.0 285 64.9
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 6.5e-86 321.6 265 66.0
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.4e-85 320.5 285 62.5
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 4.2e-85 318.9 290 62.4
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 5.5e-85 318.5 291 62.5
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 7.1e-85 318.2 305 60.0
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 4.6e-84 315.5 283 62.5
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 4.6e-84 315.5 283 63.6
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 7.9e-84 314.7 284 64.8
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 1.0e-83 314.3 282 63.1
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 2.3e-83 313.2 277 63.2
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 2.3e-83 313.2 286 61.9
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 3.0e-83 312.8 278 63.7
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 3.0e-83 312.8 289 61.6
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 3.0e-83 312.8 276 60.9
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 5.1e-83 312.0 286 61.5
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 6.7e-83 311.6 288 61.5
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 6.7e-83 311.6 285 60.7
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 6.7e-83 311.6 283 62.9
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 1.1e-82 310.8 276 63.0
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.5e-82 310.5 283 62.2
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.9e-82 310.1 282 59.9
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 3.3e-82 309.3 283 60.4
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 4.3e-82 308.9 288 60.1
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 7.4e-82 308.1 281 62.3
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 9.7e-82 307.8 278 59.4
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 2.8e-81 306.2 286 60.8
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 4.8e-81 305.4 277 59.2
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 1.4e-80 303.9 286 60.5
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 2.4e-80 303.1 279 60.9
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 2.4e-80 303.1 288 60.4
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 3.1e-80 302.8 275 62.5
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 5.3e-80 302.0 286 61.9
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 6.9e-80 301.6 286 61.9
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 6.9e-80 301.6 285 61.8
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 2.6e-79 299.7 299 58.5
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 1.3e-78 297.4 291 59.1
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 2.9e-78 296.2 278 59.4
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 6.5e-78 295.0 290 59.0
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 1.1e-77 294.3 278 59.0
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 1.6e-76 290.4 269 59.1
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 8.8e-75 284.6 283 58.0
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 7.4e-74 281.6 282 57.4
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 1.7e-73 280.4 282 57.1
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 4.8e-73 278.9 275 58.2
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 4.8e-73 278.9 286 58.4
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.1e-72 277.7 285 58.6
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 1.4e-72 277.3 282 58.2
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 3.1e-72 276.2 281 56.6
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 2.6e-71 273.1 281 55.9
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 1.0e-70 271.2 278 56.5
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 1.7e-70 270.4 274 56.9
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 1.4e-69 267.3 277 57.4
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.4e-69 267.3 284 57.0
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 3.2e-69 266.2 281 56.2
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 7.2e-69 265.0 282 55.3
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.2e-68 264.2 282 55.0
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 1.2e-68 264.2 283 55.8
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 4.7e-68 262.3 278 55.8
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 7.9e-68 261.5 274 56.6
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 7.9e-68 261.5 274 56.6
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 7.9e-68 261.5 274 56.6
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 7.9e-68 261.5 274 56.6
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 4.8e-65 252.3 276 51.4
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 8.2e-65 251.5 283 54.1
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 1.1e-64 251.1 281 51.6
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 1.2e-63 247.7 278 52.9
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 4.2e-61 239.2 279 53.0
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 9.4e-61 238.0 283 50.5
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 8.0e-60 235.0 241 55.2
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 8.8e-59 231.5 255 52.2
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.0e-54 218.0 220 57.3
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 5.2e-51 205.7 301 44.9
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 1.2e-50 204.5 277 46.6
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 1.3e-49 201.1 307 42.0
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 1.4e-48 197.6 199 56.8
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 3.5e-47 193.0 297 42.8
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 3.8e-46 189.5 196 56.1
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-42 176.4 307 41.7
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 8.3e-41 171.8 277 40.1
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.5e-39 166.4 271 38.7
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 6.1e-28 129.0 201 41.8
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 2.6e-26 123.6 71 85.9
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 6.4e-25 119.0 73 82.2
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 2.1e-20 104.0 96 46.9
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 3.0e-14 83.6 103 37.9
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.1e-13 81.6 139 40.3
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 5.2e-11 72.8 146 32.2
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 6.8e-11 72.4 104 36.5
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 4.9e-09 66.2 58 51.7
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 8.6e-06 55.5 127 37.0


User provided reference genes

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