Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 9.9e-102 373.6 212 100.0
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 4.2e-84 315.1 223 82.1
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 7.1e-84 314.3 225 81.8
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.2e-83 313.5 228 79.8
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 2.1e-83 312.8 230 82.6
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.7e-83 312.4 231 79.2
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.7e-83 312.4 231 79.2
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 2.7e-83 312.4 221 77.4
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 2.7e-83 312.4 228 80.3
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 6.0e-83 311.2 228 78.1
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 8.7e-82 307.4 223 81.2
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.5e-81 306.6 230 78.7
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 1.9e-81 306.2 229 79.9
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 3.3e-81 305.4 230 79.6
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 4.3e-81 305.1 246 73.2
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 5.6e-81 304.7 228 81.1
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 7.3e-81 304.3 230 78.3
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 9.6e-81 303.9 230 79.6
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.6e-80 303.1 230 79.1
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 2.8e-80 302.4 229 76.9
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 3.6e-80 302.0 235 77.4
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 3.6e-80 302.0 230 79.1
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 3.6e-80 302.0 229 79.9
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 8.1e-80 300.8 228 79.8
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 1.1e-79 300.4 230 77.4
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 2.4e-79 299.3 233 77.3
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 3.1e-79 298.9 227 76.7
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 4.0e-79 298.5 230 79.1
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 5.3e-79 298.1 231 75.3
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 9.0e-79 297.4 230 77.0
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 9.0e-79 297.4 232 78.0
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 1.2e-78 297.0 231 75.8
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 1.2e-78 297.0 230 77.4
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.2e-78 297.0 231 76.2
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 1.5e-78 296.6 232 77.6
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 1.5e-78 296.6 230 77.4
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 2.0e-78 296.2 231 75.3
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 2.0e-78 296.2 231 77.9
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 2.0e-78 296.2 232 77.6
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 3.4e-78 295.4 231 77.5
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 3.4e-78 295.4 226 74.8
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 5.8e-78 294.7 229 77.7
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.6e-78 294.3 232 77.6
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.3e-77 293.5 228 74.6
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.3e-77 293.5 236 77.5
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 1.7e-77 293.1 228 76.8
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 2.2e-77 292.7 229 78.6
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 2.2e-77 292.7 224 78.6
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 2.9e-77 292.4 231 74.9
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 3.8e-77 292.0 231 74.5
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 3.8e-77 292.0 228 75.9
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 6.4e-77 291.2 230 78.7
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 6.4e-77 291.2 228 78.5
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 8.4e-77 290.8 225 72.4
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 8.4e-77 290.8 233 75.5
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 1.1e-76 290.4 229 78.2
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 1.4e-76 290.0 230 76.5
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 1.9e-76 289.7 232 74.6
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 1.9e-76 289.7 232 74.6
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 1.9e-76 289.7 232 75.0
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 2.4e-76 289.3 230 74.8
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 3.2e-76 288.9 232 74.6
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 4.2e-76 288.5 231 76.2
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 4.2e-76 288.5 232 74.6
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 5.4e-76 288.1 231 74.0
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 7.1e-76 287.7 226 71.2
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 1.2e-75 287.0 232 74.1
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 1.6e-75 286.6 233 73.8
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 1.6e-75 286.6 233 73.8
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 1.6e-75 286.6 231 74.5
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 2.1e-75 286.2 230 74.8
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 2.1e-75 286.2 230 75.7
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 2.7e-75 285.8 229 78.2
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 2.7e-75 285.8 229 76.0
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 2.7e-75 285.8 231 73.2
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 2.7e-75 285.8 233 76.4
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 3.5e-75 285.4 232 75.9
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 4.6e-75 285.0 243 71.6
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 1.0e-74 283.9 232 72.8
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 1.0e-74 283.9 232 72.8
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 1.0e-74 283.9 232 75.9
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.0e-74 283.9 232 75.9
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 2.3e-74 282.7 232 73.3
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 2.3e-74 282.7 232 73.3
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 2.3e-74 282.7 232 73.3
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.3e-74 282.7 233 74.2
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.3e-74 282.7 235 73.2
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 2.3e-74 282.7 230 73.9
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 3.0e-74 282.3 225 76.9
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 3.0e-74 282.3 232 73.7
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 6.7e-74 281.2 231 71.9
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 8.7e-74 280.8 232 75.0
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 1.1e-73 280.4 230 76.5
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.1e-73 280.4 231 74.9
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.5e-73 280.0 233 73.8
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.5e-73 280.0 232 75.9
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 5.6e-73 278.1 232 75.4
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.6e-72 276.6 284 59.5
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 3.7e-72 275.4 227 74.9
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.1e-71 273.9 229 76.9
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.4e-71 273.5 220 76.8
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 2.4e-71 272.7 227 72.2
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 2.4e-71 272.7 233 73.4
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 2.4e-71 272.7 233 73.4
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 3.1e-71 272.3 231 71.4
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 1.2e-70 270.4 228 71.5
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.6e-70 269.2 223 70.4
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 3.4e-70 268.9 233 71.2
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 4.5e-70 268.5 230 70.9
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 4.5e-70 268.5 227 66.1
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 1.0e-69 267.3 232 71.6
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 1.3e-69 266.9 226 73.5
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 1.7e-69 266.5 232 72.4
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 4.9e-69 265.0 235 66.0
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.9e-68 263.1 234 70.5
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 2.5e-68 262.7 229 70.7
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 7.1e-68 261.2 221 67.4
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 9.3e-68 260.8 231 71.9
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 6.0e-67 258.1 218 72.0
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 6.0e-67 258.1 229 67.2
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 7.9e-67 257.7 229 64.2
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 1.3e-66 256.9 227 69.6
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 5.1e-66 255.0 230 69.1
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.7e-66 254.6 213 74.2
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.7e-66 254.6 223 71.3
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 1.9e-65 253.1 227 70.9
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 3.3e-65 252.3 226 67.7
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.3e-65 252.3 223 71.3
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.3e-65 251.9 223 70.9
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 7.4e-65 251.1 251 59.8
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.3e-64 250.4 222 69.8
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.7e-64 248.8 223 70.0
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 8.2e-64 247.7 216 69.0
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 3.1e-63 245.7 238 62.6
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 2.6e-62 242.7 229 67.7
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 2.1e-59 233.0 229 65.5
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 2.7e-59 232.6 271 58.3
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 6.1e-59 231.5 229 65.1
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 8.5e-53 211.1 234 62.4
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 7.9e-51 204.5 185 71.4
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 3.0e-50 202.6 186 69.9
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 7.7e-46 188.0 217 60.8
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.0e-45 187.6 150 80.0
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 3.8e-45 185.7 149 78.5
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 8.5e-45 184.5 230 54.8
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 9.4e-44 181.0 155 74.8
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 2.3e-42 176.4 240 52.5
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.3e-41 172.6 187 63.6
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 2.2e-40 169.9 134 79.9
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 2.2e-40 169.9 121 76.0
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.8e-39 166.8 108 81.5
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.4e-39 166.4 108 81.5
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.5e-38 162.5 108 79.6
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 4.5e-38 162.2 93 91.4
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.0e-37 161.0 121 71.9
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 8.5e-37 157.9 121 72.7
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.1e-36 157.5 96 85.4
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 1.8e-34 150.2 97 82.5
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 7.0e-31 138.3 121 66.9
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 2.5e-28 129.8 76 82.9
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 7.2e-28 128.3 81 79.0
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 9.4e-28 127.9 89 77.5
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 4.0e-26 122.5 216 43.5
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 2.8e-24 116.3 97 69.1
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 2.8e-24 116.3 174 51.1
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 6.3e-24 115.2 97 71.1
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 5.4e-23 112.1 209 42.1
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.4e-23 112.1 188 45.7
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 2.0e-22 110.2 78 73.1
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 6.3e-16 88.6 44 95.5
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 2.0e-14 83.6 69 65.2
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 1.8e-10 70.5 46 76.1
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 8.9e-10 68.2 110 39.1
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 7.0e-07 58.5 74 55.4


User provided reference genes

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