Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 0.0e+00 1719.9 1031 100.0
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 0.0e+00 1616.3 1031 94.0
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 0.0e+00 1415.2 1049 81.6
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 0.0e+00 1359.4 1033 82.0
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 0.0e+00 1354.3 1035 82.7
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 0.0e+00 1327.8 1033 80.7
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 0.0e+00 1080.9 1044 65.0
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 0.0e+00 1080.5 1041 65.1
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 2.8e-311 1072.0 1039 64.3
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 2.7e-298 1028.9 1042 62.5
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.3e-295 1020.0 1061 61.9
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 2.8e-295 1018.8 1057 60.8
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 2.4e-294 1015.8 1040 63.1
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 1.3e-292 1010.0 1042 63.1
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 1.6e-290 1003.0 1046 62.4
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 1.2e-288 996.9 706 81.0
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 2.0e-288 996.1 1030 61.9
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 2.2e-287 992.6 1054 61.8
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 3.5e-285 985.3 1042 61.7
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 1.7e-284 983.0 1035 63.4
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 2.3e-284 982.6 1033 61.3
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 1.9e-283 979.5 1048 60.3
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 2.5e-283 979.2 1042 60.9
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 5.6e-283 978.0 1041 63.0
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 9.5e-283 977.2 1113 57.8
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 3.1e-281 972.2 1036 59.5
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 4.0e-281 971.8 1036 62.4
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 5.2e-281 971.5 1050 60.2
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.2e-280 970.3 1036 59.3
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 1.2e-280 970.3 1084 58.9
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 1.2e-280 970.3 1039 60.6
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 2.6e-280 969.1 1034 60.6
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 7.5e-280 967.6 1063 59.8
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 2.4e-278 962.6 1042 61.4
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 7.0e-278 961.1 1045 60.6
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 7.0e-278 961.1 1043 61.4
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 9.2e-278 960.7 1038 60.3
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 2.3e-276 956.1 1060 59.6
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 8.6e-276 954.1 1040 60.6
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.9e-275 953.0 1062 59.0
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 3.3e-275 952.2 1029 61.4
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 5.6e-275 951.4 1050 60.2
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.2e-274 950.3 1032 59.8
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 2.8e-274 949.1 1040 61.6
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 1.1e-273 947.2 1052 59.7
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 1.4e-273 946.8 1039 59.3
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 8.9e-273 944.1 1039 58.6
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 2.6e-272 942.6 1030 58.8
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 4.4e-272 941.8 1045 59.8
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 7.5e-272 941.0 1035 59.3
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 1.7e-271 939.9 1027 59.5
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 4.1e-270 935.3 1033 62.0
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 7.0e-270 934.5 1034 59.6
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 9.2e-270 934.1 1042 58.7
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 1.2e-269 933.7 1038 59.3
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 2.1e-269 932.9 1038 59.2
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.7e-269 932.6 1031 59.5
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 3.5e-269 932.2 1048 63.2
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 4.6e-269 931.8 1036 58.2
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 7.8e-269 931.0 1026 59.6
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 6.6e-268 927.9 1031 59.3
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.1e-267 927.2 1046 58.4
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.9e-267 926.4 1030 59.3
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 1.2e-266 923.7 1037 58.8
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 3.6e-266 922.2 1039 58.5
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 1.4e-265 920.2 1036 60.5
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 1.8e-265 919.8 1039 59.9
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 8.9e-265 917.5 1045 59.5
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 2.0e-264 916.4 1204 53.2
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 2.9e-263 912.5 1022 58.0
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 6.4e-263 911.4 1020 57.9
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 6.4e-263 911.4 1022 58.7
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 8.3e-263 911.0 1030 59.0
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 1.1e-262 910.6 1024 58.0
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 1.1e-262 910.6 1040 58.0
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 2.4e-262 909.4 1076 57.6
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 5.4e-262 908.3 1040 57.8
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 5.4e-262 908.3 1042 61.2
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 1.2e-261 907.1 1038 59.2
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 7.8e-261 904.4 1026 57.9
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 1.3e-260 903.7 1139 55.9
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 2.3e-260 902.9 1042 57.7
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 3.0e-260 902.5 1048 56.9
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 1.1e-257 894.0 1079 58.6
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 8.9e-257 891.0 1051 56.9
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 1.2e-256 890.6 1042 58.8
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 1.2e-256 890.6 1031 57.2
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 3.4e-256 889.0 1022 57.8
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 1.3e-255 887.1 1009 58.1
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 4.9e-255 885.2 1042 56.8
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 2.4e-254 882.9 1025 57.5
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 9.2e-254 880.9 1038 58.1
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 2.7e-253 879.4 1055 55.9
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 6.0e-253 878.2 1166 53.5
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 1.0e-252 877.5 1041 56.1
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 8.7e-252 874.4 1056 56.0
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 1.5e-251 873.6 1056 56.4
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 3.6e-250 869.0 1065 55.4
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 4.7e-250 868.6 1039 56.0
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 8.1e-250 867.8 1037 55.9
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 5.3e-249 865.1 1042 55.8
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 2.2e-247 859.8 1051 57.2
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 3.5e-245 852.4 1038 55.3
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 3.9e-244 849.0 1049 53.0
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 1.5e-243 847.0 1051 57.2
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 1.9e-243 846.7 1034 57.2
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 8.1e-242 841.3 1028 55.8
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 3.8e-239 832.4 1030 55.6
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 4.2e-238 828.9 1039 54.6
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 7.1e-238 828.2 1073 52.5
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 2.1e-237 826.6 1031 55.1
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 2.5e-235 819.7 1033 54.4
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 1.9e-230 803.5 1035 53.6
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 2.3e-228 796.6 1048 53.1
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 7.9e-221 771.5 1059 52.3
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 1.8e-220 770.4 1071 51.4
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 4.3e-211 739.2 1064 51.6
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 7.0e-201 705.3 1044 50.6
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 2.2e-194 683.7 1128 45.6
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 2.7e-184 650.2 481 77.5
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 2.4e-177 627.1 939 48.5
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 2.4e-177 627.1 1062 44.3
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 1.0e-164 585.1 1045 44.1
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 9.2e-161 572.0 819 50.5
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 5.2e-156 556.2 560 61.8
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 1.2e-149 535.0 673 54.1
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 1.2e-141 508.4 778 47.7
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 2.5e-118 431.0 403 64.8
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 2.0e-107 394.8 1075 34.6
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 4.2e-81 307.4 557 45.6
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 1.4e-79 302.4 468 47.2
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 1.0e-71 276.2 346 57.2
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 5.6e-57 227.3 315 52.4
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 1.2e-56 226.1 234 63.2
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 4.1e-52 211.1 137 86.1
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 7.0e-52 210.3 158 78.5
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 5.0e-50 204.1 202 62.4
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 6.2e-40 170.6 433 38.6
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 3.1e-39 168.3 640 30.0
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 7.5e-38 163.7 239 49.8
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 8.3e-37 160.2 361 37.1
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 1.0e-34 153.3 501 37.1
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 3.0e-34 151.8 678 28.9
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 4.3e-33 147.9 120 74.2
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 4.0e-31 141.4 90 85.6
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 4.9e-29 134.4 99 74.7
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 1.1e-28 133.3 87 82.8
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 3.2e-28 131.7 88 77.3
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 5.4e-28 131.0 437 34.1
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.7e-26 125.9 91 78.0
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 1.9e-25 122.5 111 64.9
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 3.3e-25 121.7 158 54.4
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 1.2e-24 119.8 648 25.9
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.6e-24 119.4 100 69.0
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 2.8e-24 118.6 99 68.7
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 3.6e-24 118.2 102 65.7
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 4.7e-24 117.9 483 32.1
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 4.0e-23 114.8 360 31.1
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 1.2e-22 113.2 597 27.3
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.3e-21 109.8 635 24.7
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 4.9e-21 107.8 84 71.4
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 3.2e-20 105.1 486 30.2
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 4.2e-20 104.8 63 82.5
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 5.4e-20 104.4 88 69.3
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 2.3e-18 99.0 244 39.3
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 7.3e-17 94.0 97 59.8
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 2.1e-16 92.4 73 72.6
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 4.8e-16 91.3 74 68.9
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 8.1e-16 90.5 60 85.0
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 1.4e-15 89.7 71 76.1
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 5.8e-14 84.3 75 65.3
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 8.4e-13 80.5 74 64.9
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 8.4e-13 80.5 74 64.9
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 1.4e-12 79.7 200 39.5
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 1.2e-11 76.6 79 58.2
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 1.0e-10 73.6 75 61.3
AagrBONN_evm.TU.Sc2ySwM_344.1936 Anthoceros agrestis HOM05D003521 ORTHO05D000476 8.7e-10 70.5 142 40.1
Ca_25011_v3 Cicer arietinum L. HOM05D010632 ORTHO05D000013 3.3e-09 68.6 69 65.2
MBI19_g34543_MAGBIO Magnolia biondii HOM05D003521 ORTHO05D000476 9.6e-09 67.0 43 83.7
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 2.1e-08 65.9 45 77.8
EL10Ac6g13433 Beta vulgaris HOM05D000200 ORTHO05D000262 5.8e-06 57.8 41 65.9


User provided reference genes

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