Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010531g0030 Nicotiana tabacum HOM05D000580 ORTHO05D006815 7.0e-30 133.3 66 100.0
PGR111G0073 Punica granatum HOM05D000580 ORTHO05D006815 2.0e-24 115.2 74 83.8
CAN.G219.32 Capsicum annuum HOM05D000580 ORTHO05D006815 2.6e-24 114.8 74 82.4
Lalb_Chr10g0093221 Lupinus albus HOM05D000580 ORTHO05D006815 2.6e-24 114.8 74 82.4
Lalb_Chr25g0283341 Lupinus albus HOM05D000580 ORTHO05D006815 2.6e-24 114.8 74 82.4
CSS0026029 Camellia sinensis var. sinensis HOM05D000580 ORTHO05D006815 5.7e-24 113.6 74 81.1
CAN.G131.5 Capsicum annuum HOM05D000580 ORTHO05D006815 7.5e-24 113.2 74 79.7
CAN.G1513.10 Capsicum annuum HOM05D000580 ORTHO05D006815 7.5e-24 113.2 74 79.7
Gohir.A03G093700 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.3e-23 112.5 74 81.1
Gohir.1Z078601 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.7e-23 112.1 74 81.1
Gohir.A09G043800 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.7e-23 112.1 74 81.1
Gohir.D01G102060 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.7e-23 112.1 74 81.1
Gorai.010G031500 Gossypium raimondii HOM05D000580 ORTHO05D006815 1.7e-23 112.1 74 81.1
Potri.011G074901 Populus trichocarpa HOM05D000580 ORTHO05D006815 2.2e-23 111.7 74 81.1
Potri.011G113742 Populus trichocarpa HOM05D000580 ORTHO05D006815 2.2e-23 111.7 74 81.1
Potri.019G028200 Populus trichocarpa HOM05D000580 ORTHO05D006815 2.2e-23 111.7 74 81.1
CAN.G1595.6 Capsicum annuum HOM05D000580 ORTHO05D006815 2.8e-23 111.3 74 78.4
HanXRQChr05g0139711 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-23 111.3 74 79.7
HanXRQChr05g0152611 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-23 111.3 74 79.7
HanXRQChr08g0223961 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-23 111.3 74 79.7
HanXRQChr10g0283641 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-23 111.3 74 79.7
HanXRQChr10g0284331 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-23 111.3 74 79.7
HanXRQChr10g0318111 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-23 111.3 74 79.7
HanXRQChr11g0341921 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-23 111.3 74 79.7
HanXRQChr14g0459311 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-23 111.3 74 79.7
HanXRQCPg0580131 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-23 111.3 74 79.7
Nn049s41914 Nelumbo nucifera HOM05D000580 ORTHO05D006815 4.8e-23 110.5 74 79.7
Eucgr.F03245 Eucalyptus grandis HOM05D000580 ORTHO05D006815 8.3e-23 109.8 74 81.1
Gohir.1Z049866 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.3e-23 109.8 74 79.7
Gohir.A12G178620 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.3e-23 109.8 74 79.7
Gohir.A12G178665 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.3e-23 109.8 74 79.7
PSO548G0006 Papaver somniferum HOM05D000580 ORTHO05D006815 8.3e-23 109.8 74 81.1
SGA_v2.0_scaffold479G52254 Striga asiatica HOM05D000580 ORTHO05D006815 8.3e-23 109.8 74 79.7
BNapus_Darmor_BZH_scaffold_253p00300 Brassica napus HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 79.7
BNapus_Darmor_BZH_scaffold_57p00040 Brassica napus HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 79.7
C06p23100 Brassica napus HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 79.7
BolSC29t60604H Brassica oleracea HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 79.7
BolSC35t60664H Brassica oleracea HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 79.7
BolSC35t60735H Brassica oleracea HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 79.7
BolSC46t61015H Brassica oleracea HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 79.7
BolSC47t61080H Brassica oleracea HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 79.7
BolSC49t61168H Brassica oleracea HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 79.7
BraA06t25380Z Brassica rapa HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 79.7
BraSC138t45558Z Brassica rapa HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 79.7
BraSC58t46498Z Brassica rapa HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 79.7
BraSC59t46576Z Brassica rapa HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 79.7
Carub.0006s2561 Capsella rubella HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 79.7
Gohir.A09G103100 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 79.7
HanXRQChr02g0038651 Helianthus annuus HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 77.0
HanXRQChr02g0052691 Helianthus annuus HOM05D000580 ORTHO05D006815 1.4e-22 109.0 74 78.4
Gohir.A05G326916 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.8e-22 108.6 74 79.7
Gohir.A12G178630 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.4e-22 108.2 74 78.4
Lsat_1_v5_gn_5_67060 Lactuca sativa HOM05D000580 ORTHO05D006815 3.1e-22 107.8 74 78.4
AL2G20610 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 4.1e-22 107.5 74 78.4
AL2G21660 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 4.1e-22 107.5 74 78.4
ATCG00710 Arabidopsis thaliana HOM05D000580 ORTHO05D006815 4.1e-22 107.5 74 78.4
CARHR282200 Cardamine hirsuta HOM05D000580 ORTHO05D006815 4.1e-22 107.5 74 78.4
Gohir.A02G100500 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.1e-22 107.5 74 78.4
Gohir.A12G228900 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.4e-22 107.1 74 77.0
CiPaw.10G124800 Carya illinoinensis HOM05D000580 ORTHO05D006815 1.6e-21 105.5 74 75.7
LjContig00319g0006223 Lotus japonicus HOM05D000580 ORTHO05D006815 1.6e-21 105.5 74 74.3
LjContig00319g0024255 Lotus japonicus HOM05D000580 ORTHO05D006815 1.6e-21 105.5 74 74.3
Gohir.A13G110000 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.0e-21 105.1 74 77.0
BolC2t08916H Brassica oleracea HOM05D000580 ORTHO05D006815 2.7e-21 104.8 70 80.0
Sed0004233 Sechium edule HOM05D000580 ORTHO05D006815 2.7e-21 104.8 74 75.7
Sed0008111 Sechium edule HOM05D000580 ORTHO05D006815 2.7e-21 104.8 74 75.7
Sed0015899 Sechium edule HOM05D000580 ORTHO05D006815 2.7e-21 104.8 74 75.7
C06p22890 Brassica napus HOM05D000580 ORTHO05D006815 4.5e-21 104.0 74 77.0
CAN.G1478.5 Capsicum annuum HOM05D000580 ORTHO05D006815 5.9e-21 103.6 85 70.6
Hund29679 Selenicereus undatus HOM05D000580 ORTHO05D006815 5.9e-21 103.6 74 77.0
CAN.G29.17 Capsicum annuum HOM05D000580 ORTHO05D006815 7.7e-21 103.2 74 74.3
Gohir.A01G128325 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.7e-21 103.2 74 74.3
Hma1.2p1_0218F.1_g092720 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 7.7e-21 103.2 74 75.7
Hma1.2p1_2223F.1_g317406 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 7.7e-21 103.2 74 75.7
CAN.G129.14 Capsicum annuum HOM05D000580 ORTHO05D006815 1.3e-20 102.4 74 73.0
DCAR_032514 Daucus carota HOM05D000580 ORTHO05D006815 1.7e-20 102.1 74 75.7
Eucgr.B01572 Eucalyptus grandis HOM05D000580 ORTHO05D006815 1.7e-20 102.1 69 78.3
RcHm_v2.0_CPg0501961 Rosa chinensis HOM05D000580 ORTHO05D006815 1.7e-20 102.1 75 74.7
Gohir.D04G149675 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.3e-20 101.7 70 75.7
Gorai.005G164900 Gossypium raimondii HOM05D000580 ORTHO05D006815 2.3e-20 101.7 74 75.7
HanXRQChr04g0094321 Helianthus annuus HOM05D000580 ORTHO05D006815 2.3e-20 101.7 74 74.3
CARHR292710 Cardamine hirsuta HOM05D000580 ORTHO05D006815 3.8e-20 100.9 74 74.3
Gohir.D02G147200 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.8e-20 100.9 74 74.3
Nitab4.5_0001105g0140 Nicotiana tabacum HOM05D000580 ORTHO05D006815 5.0e-20 100.5 74 73.0
HanXRQChr11g0345231 Helianthus annuus HOM05D000580 ORTHO05D006815 6.6e-20 100.1 74 73.0
Peaxi162Scf00299g10016 Petunia axillaris HOM05D000580 ORTHO05D006815 6.6e-20 100.1 51 96.1
Solyc00g500026.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 6.6e-20 100.1 51 96.1
Solyc00g500072.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 6.6e-20 100.1 51 96.1
Gohir.A05G286600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.6e-20 99.8 74 74.3
Medtr2g062930 Medicago truncatula HOM05D000580 ORTHO05D006815 8.6e-20 99.8 58 82.8
CAN.G2018.9 Capsicum annuum HOM05D000580 ORTHO05D006815 1.9e-19 98.6 74 73.0
Duzib026G0003 Durio zibethinus HOM05D000580 ORTHO05D001362 1.9e-19 98.6 58 82.8
Duzib124G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 1.9e-19 98.6 58 82.8
Duzib237G0002 Durio zibethinus HOM05D000580 ORTHO05D001362 1.9e-19 98.6 58 82.8
Duzib252G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 1.9e-19 98.6 58 82.8
Duzib256G0004 Durio zibethinus HOM05D000580 ORTHO05D001362 1.9e-19 98.6 58 82.8
Migut.H01967 Erythranthe guttata HOM05D000580 ORTHO05D006815 1.9e-19 98.6 58 82.8
Gohir.A10G070250 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.9e-19 98.6 56 85.7
Gorai.008G286600 Gossypium raimondii HOM05D000580 ORTHO05D006815 2.5e-19 98.2 74 73.0
RcHm_v2.0_Chr6g0260481 Rosa chinensis HOM05D000580 ORTHO05D006815 2.5e-19 98.2 75 72.0
Glyma.17G186400 Glycine max HOM05D000580 ORTHO05D006815 4.2e-19 97.4 58 81.0
Gorai.005G110300 Gossypium raimondii HOM05D000580 ORTHO05D006815 4.2e-19 97.4 58 81.0
CAN.G648.1 Capsicum annuum HOM05D000580 ORTHO05D006815 9.5e-19 96.3 74 68.9
Medtr4g051375 Medicago truncatula HOM05D000580 ORTHO05D006815 9.5e-19 96.3 51 90.2
RcHm_v2.0_Chr4g0390611 Rosa chinensis HOM05D000580 ORTHO05D006815 9.5e-19 96.3 75 72.0
Hma1.2p1_0149F.1_g066500 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 1.2e-18 95.9 74 68.9
Psat0s7142g0160 Pisum sativum HOM05D000580 ORTHO05D001785 1.2e-18 95.9 51 90.2
Psat6g181560 Pisum sativum HOM05D000580 ORTHO05D001785 1.2e-18 95.9 51 90.2
Gohir.A05G301450 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.6e-18 95.5 74 73.0
Gohir.D09G103600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.6e-18 95.5 74 70.3
Peaxi162Scf00527g00037 Petunia axillaris HOM05D000580 ORTHO05D006815 1.6e-18 95.5 51 92.2
Potri.002G174001 Populus trichocarpa HOM05D000580 ORTHO05D006815 1.6e-18 95.5 72 72.2
Glyma.03G065000 Glycine max HOM05D000580 ORTHO05D006815 2.1e-18 95.1 74 70.3
HanXRQChr01g0020261 Helianthus annuus HOM05D000580 ORTHO05D001785 2.1e-18 95.1 65 73.8
Sed0008946 Sechium edule HOM05D000580 ORTHO05D006815 2.1e-18 95.1 74 71.6
Prupe.7G021700 Prunus persica HOM05D000580 ORTHO05D006815 2.8e-18 94.7 75 70.7
Gohir.A09G103075 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.6e-18 94.4 69 75.4
HanXRQChr07g0193501 Helianthus annuus HOM05D000580 ORTHO05D006815 3.6e-18 94.4 52 86.5
Lalb_Chr23g0274371 Lupinus albus HOM05D000580 ORTHO05D006815 3.6e-18 94.4 74 70.3
Nitab4.5_0004376g0090 Nicotiana tabacum HOM05D000580 ORTHO05D006815 3.6e-18 94.4 53 90.6
SabraPtG0004100 Salix brachista HOM05D000580 ORTHO05D001785 3.6e-18 94.4 51 90.2
Gohir.D02G096801 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.7e-18 94.0 58 77.6
HanXRQChr10g0299321 Helianthus annuus HOM05D000580 ORTHO05D001785 4.7e-18 94.0 51 88.2
HanXRQChr11g0326921 Helianthus annuus HOM05D000580 ORTHO05D001785 4.7e-18 94.0 51 88.2
SabraMtG0010300 Salix brachista HOM05D000580 ORTHO05D006815 1.4e-17 92.4 50 90.0
HanXRQChr02g0052541 Helianthus annuus HOM05D000580 ORTHO05D001785 2.3e-17 91.7 51 86.3
Psat0s1446g0280 Pisum sativum HOM05D000580 ORTHO05D001785 4.0e-17 90.9 51 84.3
C07p15330 Brassica napus HOM05D000580 ORTHO05D006815 5.2e-17 90.5 58 72.4
Psat7g045200 Pisum sativum HOM05D000580 ORTHO05D006815 6.8e-17 90.1 51 86.3
Hund08570 Selenicereus undatus HOM05D000580 ORTHO05D006815 8.9e-17 89.7 72 70.8
Ah.10g027190 Amaranthus hybridus HOM05D000580 ORTHO05D001785 2.0e-16 88.6 61 75.4
Ah.10g027480 Amaranthus hybridus HOM05D000580 ORTHO05D001785 2.0e-16 88.6 61 75.4
Lsat_1_v5_gn_5_50340 Lactuca sativa HOM05D000580 ORTHO05D006815 4.4e-16 87.4 51 84.3
Ah.10g028960 Amaranthus hybridus HOM05D000580 ORTHO05D001785 5.7e-16 87.0 61 73.8
Ah.10g027360 Amaranthus hybridus HOM05D000580 ORTHO05D006815 1.1e-14 82.8 51 82.4
EL10Ac1g01194 Beta vulgaris HOM05D000580 ORTHO05D001362 2.4e-14 81.6 58 75.9
Sc07g0006580 Simmondsia chinensis HOM05D000580 ORTHO05D006815 3.1e-14 81.3 53 73.6
Sp5g12490 Schrenkiella parvula HOM05D000580 ORTHO05D006815 5.4e-14 80.5 45 86.7
Glyma.05G092100 Glycine max HOM05D000580 ORTHO05D006815 3.5e-13 77.8 42 85.7
Hund10713 Selenicereus undatus HOM05D000580 ORTHO05D001362 5.9e-13 77.0 68 66.2
Solyc11g006675.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 1.3e-12 75.9 38 94.7
LjContig00318g0018353 Lotus japonicus HOM05D000580 ORTHO05D001785 2.9e-12 74.7 43 81.4
MELO3C033895.2 Cucumis melo HOM05D000580 ORTHO05D006815 6.6e-12 73.6 74 58.1
BolSC29t60484H Brassica oleracea HOM05D000580 ORTHO05D006815 3.3e-11 71.2 40 85.0
SMO086G0029 Selaginella moellendorffii HOM05D000580 ORTHO05D006815 1.2e-10 69.3 63 57.1
Lalb_Chr01g0009811 Lupinus albus HOM05D000580 ORTHO05D006815 4.7e-10 67.4 37 83.8
BolSC46t61022H Brassica oleracea HOM05D000580 ORTHO05D006815 2.3e-09 65.1 37 83.8
QL93p1043_0018 Quercus lobata HOM05D000580 ORTHO05D001785 2.3e-09 65.1 35 91.4
ClCG02G007580 Citrullus lanatus HOM05D000580 ORTHO05D006815 4.0e-09 64.3 36 86.1
Migut.L00683 Erythranthe guttata HOM05D000580 ORTHO05D006815 1.2e-08 62.8 45 66.7
RcHm_v2.0_Chr2g0140191 Rosa chinensis HOM05D000580 ORTHO05D006815 1.2e-08 62.8 43 74.4
Lalb_Chr23g0274191 Lupinus albus HOM05D000580 ORTHO05D006815 4.9e-07 57.4 38 76.3
MD04G1032200 Malus domestica HOM05D000580 ORTHO05D006815 4.1e-06 54.3 59 50.8


User provided reference genes

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