Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010319g0050 Nicotiana tabacum HOM05D003530 ORTHO05D004017 4.6e-50 201.1 111 100.0
Nitab4.5_0008510g0020 Nicotiana tabacum HOM05D003530 ORTHO05D004017 1.9e-35 152.5 124 77.4
Sopen02g031490 Solanum pennellii HOM05D003530 ORTHO05D004017 3.0e-33 145.2 125 75.2
Lsat_1_v5_gn_2_91740 Lactuca sativa HOM05D003530 ORTHO05D004017 5.1e-33 144.4 124 71.8
Solyc02g086730.3 Solanum lycopersicum HOM05D003530 ORTHO05D004017 6.7e-33 144.1 125 74.4
Lsat_1_v5_gn_4_182901 Lactuca sativa HOM05D003530 ORTHO05D004017 1.1e-32 143.3 125 72.8
PGSC0003DMG400000487 Solanum tuberosum HOM05D003530 ORTHO05D004017 1.1e-32 143.3 125 74.4
Solyc02g086740.1 Solanum lycopersicum HOM05D003530 ORTHO05D004017 1.5e-32 142.9 125 74.4
Sopen02g031500 Solanum pennellii HOM05D003530 ORTHO05D004017 1.5e-32 142.9 125 74.4
PGSC0003DMG400000488 Solanum tuberosum HOM05D003530 ORTHO05D004017 1.5e-32 142.9 125 74.4
Nitab4.5_0003505g0030 Nicotiana tabacum HOM05D003530 ORTHO05D004017 7.4e-32 140.6 124 73.4
Lju41C36T20 Lonicera japonica HOM05D003530 ORTHO05D004017 9.6e-32 140.2 124 70.2
Peaxi162Scf00129g10129 Petunia axillaris HOM05D001272 ORTHO05D001843 2.1e-31 139.0 124 72.6
Nitab4.5_0004321g0010 Nicotiana tabacum HOM05D003530 ORTHO05D004017 6.2e-31 137.5 124 72.6
SalBow7G4259 Salvia bowleyana HOM05D003530 ORTHO05D004017 3.1e-30 135.2 124 70.2
Actinidia35752 Actinidia chinensis HOM05D003530 ORTHO05D004017 5.3e-30 134.4 124 71.0
Hma1.2p1_0858F.1_g229290 Hydrangea macrophylla HOM05D003530 ORTHO05D004017 5.3e-30 134.4 124 66.1
Migut.H00104 Erythranthe guttata HOM05D003530 ORTHO05D004017 6.9e-30 134.0 124 71.8
Nitab4.5_0009062g0010 Nicotiana tabacum HOM05D003530 ORTHO05D004017 1.2e-29 133.3 124 70.2
Oeu054688.1 Olea europaea HOM05D003530 ORTHO05D004017 1.5e-29 132.9 126 68.3
Nitab4.5_0005820g0010 Nicotiana tabacum HOM05D003530 ORTHO05D004017 4.5e-29 131.3 114 73.7
Dinv33477 Davidia involucrata HOM05D003530 ORTHO05D004017 5.8e-29 131.0 123 67.5
ECA240G2852 Erigeron canadensis HOM05D003530 ORTHO05D004017 5.8e-29 131.0 125 68.8
DCAR_021694 Daucus carota HOM05D003530 ORTHO05D004017 9.9e-29 130.2 124 66.1
HanXRQChr07g0198851 Helianthus annuus HOM05D003530 ORTHO05D004017 1.3e-28 129.8 121 69.4
Cc07_g02040 Coffea canephora HOM05D003530 ORTHO05D004017 4.9e-28 127.9 126 67.5
Hma1.2p1_0993F.1_g245370 Hydrangea macrophylla HOM05D003530 ORTHO05D004017 4.9e-28 127.9 124 63.7
Rhsim10G0020100 Rhododendron simsii HOM05D003530 ORTHO05D004017 4.9e-28 127.9 124 66.9
arahy.Tifrunner.gnm1.ann1.816STY Arachis hypogaea HOM05D003530 ORTHO05D004017 8.4e-28 127.1 126 67.5
Peaxi162Scf00700g00054 Petunia axillaris HOM05D003530 ORTHO05D004017 1.9e-27 125.9 124 67.7
Gohir.D08G019600 Gossypium hirsutum HOM05D003530 ORTHO05D004017 2.4e-27 125.6 125 65.6
Gohir.A08G009500 Gossypium hirsutum HOM05D003530 ORTHO05D004017 3.2e-27 125.2 125 66.4
unitig_52.g17666 Utricularia gibba HOM05D003530 ORTHO05D004017 3.2e-27 125.2 124 63.7
Gorai.001G263100 Gossypium raimondii HOM05D003530 ORTHO05D004017 5.5e-27 124.4 126 65.9
unitig_62.g23149 Utricularia gibba HOM05D003530 ORTHO05D004017 7.1e-27 124.0 124 63.7
Gohir.D07G228100 Gossypium hirsutum HOM05D003530 ORTHO05D004017 1.2e-26 123.2 126 65.1
Oeu014862.1 Olea europaea HOM05D003530 ORTHO05D004017 1.2e-26 123.2 122 64.8
TWI12G0626 Tripterygium wilfordii HOM05D003530 ORTHO05D004017 1.2e-26 123.2 124 62.1
Lsat_1_v5_gn_2_14440 Lactuca sativa HOM05D003530 ORTHO05D004017 1.6e-26 122.9 113 67.3
Gorai.004G014100 Gossypium raimondii HOM05D003530 ORTHO05D004017 2.1e-26 122.5 125 64.8
Phvul.011G027700 Phaseolus vulgaris HOM05D003530 ORTHO05D004017 2.1e-26 122.5 124 62.1
EL10Ac4g08602 Beta vulgaris HOM05D003530 ORTHO05D004017 2.7e-26 122.1 125 64.8
Lj2g0009781 Lotus japonicus HOM05D003530 ORTHO05D004017 3.5e-26 121.7 124 62.9
Sc03g0011050 Simmondsia chinensis HOM05D003530 ORTHO05D004017 3.5e-26 121.7 123 65.9
Glyma.11G099300 Glycine max HOM05D003530 ORTHO05D004017 4.6e-26 121.3 125 63.2
Sed0013614 Sechium edule HOM05D003530 ORTHO05D004017 4.6e-26 121.3 124 62.1
VMungo1127G1762 Vigna mungo HOM05D003530 ORTHO05D004017 4.6e-26 121.3 125 62.4
Gohir.A05G358400 Gossypium hirsutum HOM05D003530 ORTHO05D004017 7.9e-26 120.6 125 64.0
DCAR_015053 Daucus carota HOM05D003530 ORTHO05D004017 1.0e-25 120.2 125 60.8
Glyma.12G025400 Glycine max HOM05D003530 ORTHO05D004017 1.0e-25 120.2 125 62.4
Nitab4.5_0006542g0030 Nicotiana tabacum HOM05D003530 ORTHO05D004017 1.0e-25 120.2 111 70.3
ClCG10G014140 Citrullus lanatus HOM05D003530 ORTHO05D004017 1.3e-25 119.8 127 61.4
Sed0017530 Sechium edule HOM05D003530 ORTHO05D004017 1.3e-25 119.8 125 62.4
Gohir.A07G221400 Gossypium hirsutum HOM05D003530 ORTHO05D004017 3.0e-25 118.6 126 63.5
Sabra16G0225800 Salix brachista HOM05D003530 ORTHO05D004017 3.0e-25 118.6 125 61.6
Gorai.012G062600 Gossypium raimondii HOM05D003530 ORTHO05D004017 3.9e-25 118.2 125 62.4
Manes.04G063300 Manihot esculenta HOM05D003530 ORTHO05D004017 3.9e-25 118.2 126 64.3
Nn3g16848 Nelumbo nucifera HOM05D003530 ORTHO05D004017 3.9e-25 118.2 125 62.4
CsaV3_3G042510 Cucumis sativus L. HOM05D003530 ORTHO05D004017 8.7e-25 117.1 127 59.8
Potri.001G346100 Populus trichocarpa HOM05D003530 ORTHO05D004017 8.7e-25 117.1 126 63.5
TPR.G27369 Trifolium pratense HOM05D003530 ORTHO05D004017 8.7e-25 117.1 124 63.7
Medtr6g006060 Medicago truncatula HOM05D003530 ORTHO05D004017 1.1e-24 116.7 124 63.7
COL.COLO4_29002 Corchorus olitorius HOM05D003530 ORTHO05D004017 1.5e-24 116.3 125 63.2
Lalb_Chr06g0175931 Lupinus albus HOM05D003530 ORTHO05D004017 1.5e-24 116.3 125 59.2
MELO3C021553.2 Cucumis melo HOM05D003530 ORTHO05D004017 1.9e-24 115.9 127 59.8
CDE10G0273 Ceratophyllum demersum HOM05D003530 ORTHO05D004017 2.5e-24 115.5 124 58.9
Gohir.D04G055700 Gossypium hirsutum HOM05D003530 ORTHO05D004017 2.5e-24 115.5 125 61.6
Ah.12g054660 Amaranthus hybridus HOM05D003530 ORTHO05D004017 3.3e-24 115.2 120 62.5
CiPaw.04G026100 Carya illinoinensis HOM05D003530 ORTHO05D004017 4.3e-24 114.8 126 61.9
Sed0027802 Sechium edule HOM05D003530 ORTHO05D004017 4.3e-24 114.8 127 59.1
Thecc.04G011600 Theobroma cacao HOM05D003530 ORTHO05D004017 4.3e-24 114.8 126 62.7
PGR142G3122 Punica granatum HOM05D003530 ORTHO05D004017 5.6e-24 114.4 128 59.4
CiPaw.03G039700 Carya illinoinensis HOM05D003530 ORTHO05D004017 7.4e-24 114.0 126 61.1
FAN05G3949 Fragaria x ananassa HOM05D003530 ORTHO05D004017 7.4e-24 114.0 124 60.5
Manes.11G104900 Manihot esculenta HOM05D003530 ORTHO05D004017 7.4e-24 114.0 126 61.9
Lalb_Chr17g0337251 Lupinus albus HOM05D003530 ORTHO05D004017 9.6e-24 113.6 124 62.1
FAN09G0266 Fragaria x ananassa HOM05D003530 ORTHO05D004017 1.3e-23 113.2 124 59.7
Sabra16G0225100 Salix brachista HOM05D003530 ORTHO05D004017 1.3e-23 113.2 126 59.5
FvH4_6g50910 Fragaria vesca HOM05D003530 ORTHO05D004017 1.6e-23 112.8 124 59.7
FAN14G3916 Fragaria x ananassa HOM05D003530 ORTHO05D004017 1.6e-23 112.8 124 59.7
Psat1g056240 Pisum sativum HOM05D003530 ORTHO05D004017 1.6e-23 112.8 124 62.9
QL02p075946 Quercus lobata HOM05D003530 ORTHO05D004017 2.8e-23 112.1 123 60.2
Aa31LG9G1280 Aethionema arabicum HOM05D003530 ORTHO05D004017 3.7e-23 111.7 125 60.8
MD09G1031000 Malus domestica HOM05D003530 ORTHO05D004017 3.7e-23 111.7 124 58.1
BraA09t35991Z Brassica rapa HOM05D003530 ORTHO05D004017 4.8e-23 111.3 125 60.0
FAN02G4450 Fragaria x ananassa HOM05D003530 ORTHO05D004017 4.8e-23 111.3 124 58.9
LjContig00484g0021782 Lotus japonicus HOM05D003530 ORTHO05D004017 4.8e-23 111.3 127 59.1
Rhsim08G0053400 Rhododendron simsii HOM05D003530 ORTHO05D004017 4.8e-23 111.3 124 60.5
CANSAT64G2824 Cannabis sativa HOM05D003530 ORTHO05D004017 8.2e-23 110.5 125 60.0
RcHm_v2.0_Chr2g0172281 Rosa chinensis HOM05D003530 ORTHO05D004017 1.1e-22 110.2 124 59.7
SGA_v2.0_scaffold40G15640 Striga asiatica HOM05D003530 ORTHO05D004017 1.1e-22 110.2 122 59.0
Ah.07g200110 Amaranthus hybridus HOM05D003530 ORTHO05D004017 1.4e-22 109.8 121 62.8
BcaC06g30959 Brassica carinata HOM05D003530 ORTHO05D004017 1.4e-22 109.8 125 59.2
MELO3C009965.2 Cucumis melo HOM05D003530 ORTHO05D004017 1.4e-22 109.8 127 57.5
BcaC06g30958 Brassica carinata HOM05D003530 ORTHO05D004017 1.8e-22 109.4 125 59.2
Migut.K01378 Erythranthe guttata HOM05D003530 ORTHO05D004017 1.8e-22 109.4 124 60.5
CSS0007307 Camellia sinensis var. sinensis HOM05D003530 ORTHO05D004017 2.4e-22 109.0 124 58.9
Thhalv10004960m.g Eutrema salsugineum HOM05D003530 ORTHO05D004017 2.4e-22 109.0 125 60.8
Thhalv10004964m.g Eutrema salsugineum HOM05D003530 ORTHO05D004017 2.4e-22 109.0 125 60.8
Ciclev10016852m.g Citrus clementina HOM05D003530 ORTHO05D004017 3.1e-22 108.6 127 61.4
SalBow1G5378 Salvia bowleyana HOM05D003530 ORTHO05D004017 3.1e-22 108.6 109 62.4
SGA_v2.0_scaffold30G12445 Striga asiatica HOM05D003530 ORTHO05D004017 3.1e-22 108.6 124 58.9
CARHR149300 Cardamine hirsuta HOM05D003530 ORTHO05D004017 4.0e-22 108.2 124 58.9
CARHR149320 Cardamine hirsuta HOM05D003530 ORTHO05D004017 4.0e-22 108.2 124 58.9
Cpa.g.sc39.100 Carica papaya HOM05D003530 ORTHO05D004017 4.0e-22 108.2 126 59.5
TAR622G1176 Trochodendron aralioides HOM05D003530 ORTHO05D004017 4.0e-22 108.2 119 56.3
ATR0789G179 Amborella trichopoda HOM05D003530 ORTHO05D004017 6.9e-22 107.5 129 56.6
Aa31LG2G4880 Aethionema arabicum HOM05D003530 ORTHO05D004017 9.0e-22 107.1 124 57.3
AL5G17260 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 9.0e-22 107.1 124 58.1
Haze_14690 Corylus avellana HOM05D003530 ORTHO05D004017 9.0e-22 107.1 125 59.2
AT3G27830 Arabidopsis thaliana HOM05D003530 ORTHO05D004017 1.2e-21 106.7 124 57.3
AT3G27850 Arabidopsis thaliana HOM05D003530 ORTHO05D004017 1.2e-21 106.7 124 57.3
Cfa007412 Carpinus fangiana HOM05D003530 ORTHO05D004017 1.2e-21 106.7 125 58.4
PSO017G1080 Papaver somniferum HOM05D003530 ORTHO05D004017 1.2e-21 106.7 124 56.5
PSO478G3901 Papaver somniferum HOM05D003530 ORTHO05D004017 1.2e-21 106.7 124 56.5
MD17G1032900 Malus domestica HOM05D003530 ORTHO05D004017 2.0e-21 105.9 124 55.6
Aqoxy3G02924 Aquilegia oxysepala HOM05D003530 ORTHO05D004017 4.5e-21 104.8 125 57.6
Duzib147G0262 Durio zibethinus HOM05D003530 ORTHO05D004017 5.8e-21 104.4 127 57.5
CDE10G0897 Ceratophyllum demersum HOM05D003530 ORTHO05D004017 1.0e-20 103.6 124 54.8
Prupe.3G286600 Prunus persica HOM05D003530 ORTHO05D004017 1.7e-20 102.8 124 54.8
PGR083G1866 Punica granatum HOM05D003530 ORTHO05D004017 1.7e-20 102.8 126 57.9
Os05g0568300 Oryza sativa ssp. japonica HOM05D003530 ORTHO05D004017 4.9e-20 101.3 125 56.0
Carub.0005s0635 Capsella rubella HOM05D003530 ORTHO05D004017 5.5e-19 97.8 124 54.0
Carub.0005s0637 Capsella rubella HOM05D003530 ORTHO05D004017 5.5e-19 97.8 124 54.0
Atru.chr6.2226 Acer truncatum HOM05D003530 ORTHO05D004017 7.1e-19 97.4 124 54.0
Atru.chr6.2319 Acer truncatum HOM05D003530 ORTHO05D004017 7.1e-19 97.4 124 54.0
MBI10_g28017_MAGBIO Magnolia biondii HOM05D003530 ORTHO05D004017 7.1e-19 97.4 124 52.4
ClCG09G019050 Citrullus lanatus HOM05D003530 ORTHO05D004017 9.3e-19 97.1 127 54.3
THA.LOC104805389 Tarenaya hassleriana HOM05D003530 ORTHO05D004017 9.3e-19 97.1 127 55.1
HPP92_005137 Vanilla planifolia HOM05D003530 ORTHO05D004017 9.3e-19 97.1 127 52.0
Dinv35079 Davidia involucrata HOM05D003530 ORTHO05D004017 1.6e-18 96.3 101 62.4
AL5G17330 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 2.7e-18 95.5 124 53.2
THA.LOC104823944 Tarenaya hassleriana HOM05D003530 ORTHO05D004017 2.7e-18 95.5 127 54.3
BcaC03g17492 Brassica carinata HOM05D003530 ORTHO05D004017 6.0e-18 94.4 125 54.4
C02p54500 Brassica napus HOM05D003530 ORTHO05D004017 6.0e-18 94.4 125 54.4
BolC2t11513H Brassica oleracea HOM05D003530 ORTHO05D004017 6.0e-18 94.4 125 54.4
PSO832G4560 Papaver somniferum HOM05D003530 ORTHO05D004017 6.0e-18 94.4 124 53.2
SMO356G0309 Selaginella moellendorffii HOM05D003530 ORTHO05D004017 1.0e-17 93.6 119 52.9
A09p03530 Brassica napus HOM05D003530 ORTHO05D004017 1.3e-17 93.2 125 53.6
A06p40860 Brassica napus HOM05D003530 ORTHO05D004017 1.8e-17 92.8 125 53.6
A06p40870 Brassica napus HOM05D003530 ORTHO05D004017 1.8e-17 92.8 125 53.6
BraA06t27008Z Brassica rapa HOM05D003530 ORTHO05D004017 1.8e-17 92.8 125 53.6
BraA06t27009Z Brassica rapa HOM05D003530 ORTHO05D004017 1.8e-17 92.8 125 53.6
PSO063G4512 Papaver somniferum HOM05D003530 ORTHO05D004017 1.8e-17 92.8 124 52.4
Sp2g16890 Schrenkiella parvula HOM05D003530 ORTHO05D004017 1.8e-17 92.8 129 52.7
BcaC06g33781 Brassica carinata HOM05D003530 ORTHO05D004017 3.9e-17 91.7 125 52.8
C07p37000 Brassica napus HOM05D003530 ORTHO05D004017 3.9e-17 91.7 125 52.8
BolC7t44212H Brassica oleracea HOM05D003530 ORTHO05D004017 3.9e-17 91.7 125 52.8
BcaC06g33779 Brassica carinata HOM05D003530 ORTHO05D004017 5.1e-17 91.3 125 52.8
BcaC06g33780 Brassica carinata HOM05D003530 ORTHO05D004017 5.1e-17 91.3 125 52.8
C07p37010 Brassica napus HOM05D003530 ORTHO05D004017 5.1e-17 91.3 125 52.8
BolC7t44213H Brassica oleracea HOM05D003530 ORTHO05D004017 5.1e-17 91.3 125 52.8
Zm00001eb359610 Zea mays HOM05D003530 ORTHO05D004017 5.1e-17 91.3 127 52.0
A02p35660 Brassica napus HOM05D003530 ORTHO05D004017 6.7e-17 90.9 125 52.8
BraA02t08568Z Brassica rapa HOM05D003530 ORTHO05D004017 6.7e-17 90.9 125 52.8
Pp3c26_10990 Physcomitrium patens HOM05D003530 ORTHO05D004017 1.9e-16 89.4 122 51.6
Pp3c25_1440 Physcomitrium patens HOM05D003530 ORTHO05D004017 3.3e-16 88.6 121 49.6
HanXRQChr05g0136281 Helianthus annuus HOM05D003530 ORTHO05D004017 9.7e-16 87.0 59 88.1
BcaB07g30141 Brassica carinata HOM05D003530 ORTHO05D004017 1.3e-15 86.7 120 51.7
Pp3c16_2080 Physcomitrium patens HOM05D003530 ORTHO05D004017 1.3e-15 86.7 120 47.5
Lalb_Chr10g0093931 Lupinus albus HOM05D003530 ORTHO05D004017 6.3e-15 84.3 102 56.9
QL02p075960 Quercus lobata HOM05D003530 ORTHO05D004017 6.3e-15 84.3 119 50.4
AUR62037980 Chenopodium quinoa HOM05D003530 ORTHO05D004017 1.4e-14 83.2 99 55.6
Pp3c4_24130 Physcomitrium patens HOM05D003530 ORTHO05D004017 1.8e-14 82.8 122 49.2
AT3G27840 Arabidopsis thaliana HOM05D003530 ORTHO05D004017 3.1e-14 82.0 127 47.2
SEGI_29600 Sequoiadendron giganteum HOM05D003530 ORTHO05D004017 5.3e-14 81.3 129 45.0
AL5G17310 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 2.0e-13 79.3 127 46.5
Zm00001eb157660 Zea mays HOM05D003530 ORTHO05D004017 2.0e-13 79.3 104 53.8
BcaB01g03824 Brassica carinata HOM05D003530 ORTHO05D004017 4.5e-13 78.2 129 43.4
Mapoly0071s0038 Marchantia polymorpha HOM05D003530 ORTHO05D004017 1.7e-12 76.3 118 48.3
Pp3c5_2700 Physcomitrium patens HOM05D003530 ORTHO05D004017 1.6e-10 69.7 123 43.1
C09p03760 Brassica napus HOM05D003530 ORTHO05D004017 2.7e-10 68.9 40 92.5
Ca_04182_v3 Cicer arietinum L. HOM05D003530 ORTHO05D004017 6.1e-10 67.8 40 92.5
BraA03t11271Z Brassica rapa HOM05D003530 ORTHO05D004017 1.0e-09 67.0 129 41.9
CAN.G206.18 Capsicum annuum HOM05D003530 ORTHO05D004017 1.0e-09 67.0 40 90.0
Os01g0662300 Oryza sativa ssp. japonica HOM05D003530 ORTHO05D004017 1.8e-09 66.2 40 90.0
C03p23680 Brassica napus HOM05D003530 ORTHO05D004017 1.9e-08 62.8 170 34.1
BolC3t14763H Brassica oleracea HOM05D003530 ORTHO05D004017 1.9e-08 62.8 170 34.1
GSVIVG01032454001 Vitis vinifera HOM05D003530 ORTHO05D004017 2.5e-08 62.4 97 49.5
Cre13.g581650 Chlamydomonas reinhardtii HOM05D003530 ORTHO05D004017 3.3e-08 62.0 124 41.1
AUR62019712 Chenopodium quinoa HOM05D003530 ORTHO05D004017 4.3e-08 61.6 84 54.8
Peaxi162Scf00481g00619 Petunia axillaris HOM05D003530 ORTHO05D004017 4.3e-08 61.6 36 86.1
TAR374G1092 Trochodendron aralioides HOM05D003530 ORTHO05D004017 5.7e-08 61.2 100 50.0
ATR1156G070 Amborella trichopoda HOM05D003530 ORTHO05D004017 3.7e-07 58.5 100 41.0
A03p20200 Brassica napus HOM05D003530 ORTHO05D004017 8.2e-07 57.4 129 38.0
BolC9t53296H Brassica oleracea HOM05D003530 ORTHO05D004017 4.1e-06 55.1 31 90.3
CiPaw.07G053000 Carya illinoinensis HOM05D001156 ORTHO05D001006 9.1e-06 53.9 131 38.9


User provided reference genes

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