Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 0.0e+00 1743.8 911 100.0
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 0.0e+00 1667.9 917 96.1
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 0.0e+00 1427.9 936 82.3
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 0.0e+00 1426.4 937 83.2
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 0.0e+00 1419.4 937 82.9
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 0.0e+00 1284.6 913 78.0
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 1.0e-272 943.7 963 58.2
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 9.3e-258 894.0 939 56.1
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 1.6e-249 866.7 941 54.0
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.2e-244 850.5 913 55.9
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.4e-242 843.6 924 53.4
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 4.2e-242 842.0 944 52.9
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 3.9e-240 835.5 944 52.5
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 5.1e-240 835.1 928 54.3
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 8.8e-240 834.3 943 52.2
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 1.0e-235 820.8 921 52.2
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 2.9e-235 819.3 982 52.1
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 5.0e-235 818.5 940 53.5
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 2.7e-233 812.8 939 51.8
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 2.7e-233 812.8 951 52.8
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 1.1e-231 807.4 954 50.9
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 9.7e-231 804.3 958 51.5
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 4.8e-230 802.0 928 54.1
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 1.1e-229 800.8 963 50.6
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 2.4e-229 799.7 925 52.4
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 4.1e-229 798.9 953 51.4
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 5.3e-229 798.5 961 50.9
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.6e-228 797.0 949 51.4
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 5.0e-227 792.0 934 51.2
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 1.9e-226 790.0 953 49.6
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 2.5e-226 789.6 930 51.3
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 2.7e-225 786.2 942 50.8
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 6.1e-225 785.0 924 51.8
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.3e-223 779.2 1015 47.9
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 7.5e-223 778.1 952 50.6
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 9.7e-223 777.7 1004 48.2
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 3.7e-222 775.8 1026 48.2
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 1.2e-220 770.8 992 48.9
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 2.2e-219 766.5 945 50.6
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 2.9e-219 766.1 919 53.4
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 6.5e-219 765.0 1013 47.4
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.0e-216 757.7 1013 47.5
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 1.4e-216 757.3 922 49.3
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 2.3e-216 756.5 950 48.6
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.2e-215 754.2 1039 46.9
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 1.5e-215 753.8 836 53.9
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 7.5e-215 751.5 973 48.3
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.8e-214 749.6 937 48.6
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 1.3e-211 740.7 965 48.0
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 3.8e-211 739.2 942 48.5
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 9.5e-210 734.6 967 47.7
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 1.8e-208 730.3 943 48.4
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 4.0e-208 729.2 859 53.2
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 2.4e-205 719.9 965 47.5
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 5.4e-205 718.8 956 46.9
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 5.4e-205 718.8 968 46.8
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 9.2e-205 718.0 956 46.9
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 2.0e-204 716.8 832 52.9
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 1.2e-199 701.0 1008 47.9
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.9e-198 696.4 925 46.5
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.1e-197 694.5 1080 43.9
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 1.9e-197 693.7 909 46.1
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 2.0e-196 690.3 950 45.4
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 3.5e-196 689.5 878 49.2
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 3.9e-195 686.0 939 45.8
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 1.1e-194 684.5 914 46.3
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 1.2e-193 681.0 830 51.2
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 2.1e-193 680.2 921 47.0
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 3.7e-190 669.5 795 50.4
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 9.2e-189 664.8 904 47.6
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 1.2e-188 664.5 918 46.0
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 1.2e-188 664.5 969 43.3
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 2.1e-188 663.7 946 45.2
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 4.6e-188 662.5 949 45.2
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 3.9e-187 659.4 944 44.4
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 8.1e-185 651.7 919 45.8
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 8.9e-184 648.3 954 43.6
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 2.6e-183 646.7 990 44.2
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 5.8e-183 645.6 780 50.4
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 3.7e-182 642.9 916 44.5
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 1.7e-179 634.0 746 50.8
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 1.7e-179 634.0 924 43.8
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.1e-177 627.1 892 45.2
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 2.4e-176 623.6 900 44.6
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 1.5e-175 620.9 776 50.6
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 1.7e-174 617.5 966 41.8
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 5.4e-173 612.5 782 49.6
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 5.1e-171 605.9 924 43.8
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 4.4e-167 592.8 1004 41.0
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 2.9e-166 590.1 1004 40.6
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 3.8e-166 589.7 1042 40.0
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.6e-161 574.3 932 42.6
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 3.2e-157 560.1 958 42.4
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 3.3e-154 550.1 914 41.2
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 5.6e-154 549.3 909 41.7
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 3.7e-153 546.6 921 41.7
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 8.1e-153 545.4 925 41.3
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 1.1e-152 545.0 917 40.8
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 1.4e-152 544.7 920 40.9
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 1.4e-152 544.7 915 40.7
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 9.0e-152 542.0 932 40.7
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 9.9e-151 538.5 915 40.5
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 1.3e-150 538.1 582 54.0
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 2.9e-150 537.0 915 40.5
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 6.4e-150 535.8 555 56.2
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.4e-149 534.6 937 39.6
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 9.3e-149 531.9 910 40.2
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 6.7e-147 525.8 920 41.1
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.6e-143 513.8 675 48.0
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 3.2e-141 506.9 982 38.0
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 1.3e-137 495.0 557 51.5
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 2.8e-137 493.8 576 50.0
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 2.1e-124 451.1 757 41.0
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 3.7e-121 440.3 1013 34.0
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 3.1e-120 437.2 746 40.5
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.8e-113 414.1 601 44.4
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 9.4e-109 399.1 750 38.7
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 8.0e-108 396.0 468 49.4
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 2.6e-106 391.0 756 38.2
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 9.7e-106 389.0 527 45.5
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.6e-103 381.7 983 31.9
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 7.7e-103 379.4 544 43.8
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 1.0e-102 379.0 369 59.6
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 5.2e-99 366.7 994 31.4
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 5.7e-98 363.2 783 36.1
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 1.2e-95 355.5 578 42.6
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.3e-94 352.1 1025 31.8
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 5.5e-93 346.7 777 35.8
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 1.2e-92 345.5 340 58.5
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 4.7e-92 343.6 530 43.6
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 6.3e-89 333.2 574 40.4
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 1.0e-86 325.9 701 37.1
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.9e-85 321.6 269 64.7
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.7e-84 317.0 1060 27.7
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 5.4e-80 303.5 287 57.1
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 4.6e-79 300.4 334 51.2
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 5.8e-66 256.9 677 32.1
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 3.7e-65 254.2 254 55.9
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 8.1e-60 236.5 245 54.3
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 3.5e-55 221.1 293 48.8
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 1.5e-50 205.7 378 39.9
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 6.4e-49 200.3 367 37.9
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 1.1e-48 199.5 362 37.8
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.7e-47 194.9 186 59.7
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.8e-43 182.2 290 41.4
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 3.1e-43 181.4 480 33.8
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.9e-37 162.2 153 54.9
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 4.3e-37 161.0 229 48.9
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 8.1e-36 156.8 199 52.3
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 2.4e-35 155.2 415 32.0
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 4.9e-33 147.5 320 35.3
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 5.7e-29 134.0 293 39.2
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 6.2e-28 130.6 182 44.0
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 6.2e-28 130.6 183 45.4
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 4.1e-27 127.9 180 45.0
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.5e-26 125.9 232 40.5
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 4.5e-26 124.4 200 44.5
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 6.5e-25 120.6 219 42.0
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.5e-23 114.8 156 42.9
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 1.8e-22 112.5 91 69.2
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 9.7e-21 106.7 519 27.2
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 1.1e-19 103.2 142 44.4
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 5.9e-18 97.4 194 36.6
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.2e-16 91.7 116 51.7
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 4.2e-16 91.3 175 40.0
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 9.4e-16 90.1 187 38.0
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 1.2e-15 89.7 83 60.2
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 5.1e-14 84.3 158 33.5
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 1.1e-13 83.2 85 50.6
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 7.4e-13 80.5 95 42.1
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 9.7e-13 80.1 139 36.0
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 6.9e-11 73.9 182 37.4
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 5.9e-10 70.9 184 31.5
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 9.4e-08 63.5 63 47.6
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 9.4e-08 63.5 63 47.6
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 2.1e-07 62.4 98 42.9
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.7e-07 62.0 98 37.8
HanXRQChr02g0048981 Helianthus annuus HOM05D003625 ORTHO05D004382 6.1e-07 60.8 95 40.0
HanXRQChr09g0270771 Helianthus annuus HOM05D003625 ORTHO05D004382 3.0e-06 58.5 96 38.5
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 6.7e-06 57.4 50 58.0


User provided reference genes

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