Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 2.5e-136 490.0 570 100.0
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 2.3e-121 440.3 579 95.0
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 4.7e-82 309.7 368 82.3
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 8.6e-76 288.9 355 81.7
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 4.9e-71 273.1 354 83.3
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 1.3e-63 248.4 571 75.7
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 1.3e-60 238.4 360 73.9
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 1.7e-60 238.0 354 74.3
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 8.6e-60 235.7 331 78.2
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 1.5e-59 235.0 364 73.6
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 1.5e-59 235.0 355 74.4
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 3.3e-59 233.8 331 77.9
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 2.4e-57 227.6 203 56.7
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 2.9e-55 220.7 359 70.5
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 2.9e-55 220.7 331 77.6
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 3.8e-55 220.3 353 56.1
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 6.4e-55 219.5 332 75.0
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 1.1e-54 218.8 346 74.6
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 1.9e-54 218.0 329 75.1
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 3.2e-54 217.2 205 53.2
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 4.1e-54 216.9 346 72.8
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 7.1e-54 216.1 351 72.6
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 1.2e-53 215.3 329 74.5
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 1.2e-53 215.3 329 76.3
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 1.6e-53 214.9 356 71.3
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 1.6e-53 214.9 366 70.5
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 2.1e-53 214.5 329 74.2
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 2.1e-53 214.5 357 70.6
Hma1.2p1_1041F.1_g251050 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 2.1e-53 214.5 170 60.6
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 2.7e-53 214.2 348 72.7
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 3.5e-53 213.8 370 67.8
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 1.3e-52 211.8 159 63.5
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 2.3e-52 211.1 329 74.2
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 3.9e-52 210.3 204 53.9
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 5.1e-52 209.9 322 78.3
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 6.6e-52 209.5 322 78.0
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 1.5e-51 208.4 539 71.6
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 1.5e-51 208.4 201 56.7
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 1.5e-51 208.4 157 62.4
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 3.3e-51 207.2 333 73.6
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 3.3e-51 207.2 383 68.4
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 9.6e-51 205.7 360 64.7
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 1.2e-50 205.3 360 64.4
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 2.1e-50 204.5 356 69.1
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 3.6e-50 203.8 187 52.9
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 4.7e-50 203.4 333 74.2
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 6.2e-50 203.0 333 71.5
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 8.1e-50 202.6 332 72.9
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 8.1e-50 202.6 332 73.2
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 1.8e-49 201.4 332 72.6
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 2.4e-49 201.1 369 65.6
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 4.0e-49 200.3 301 82.1
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 4.0e-49 200.3 149 61.7
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 6.9e-49 199.5 329 72.6
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 9.0e-49 199.1 356 68.3
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 2.6e-48 197.6 332 73.5
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 3.4e-48 197.2 177 54.2
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 4.4e-48 196.8 176 53.4
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 4.4e-48 196.8 333 73.3
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 7.6e-48 196.1 333 73.0
Gohir.D05G352101 Gossypium hirsutum HOM05D006106 ORTHO05D007662 9.9e-48 195.7 160 56.9
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 9.9e-48 195.7 187 51.9
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.3e-47 195.3 184 52.2
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 1.3e-47 195.3 353 69.7
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 1.7e-47 194.9 337 71.5
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 4.9e-47 193.4 177 52.0
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 8.4e-47 192.6 333 73.0
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 4.2e-46 190.3 350 69.4
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 4.2e-46 190.3 332 69.6
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 4.2e-46 190.3 332 69.6
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 5.4e-46 189.9 177 51.4
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 7.1e-46 189.5 177 52.5
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 9.3e-46 189.1 343 66.2
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 9.3e-46 189.1 166 54.8
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 1.2e-45 188.7 165 55.2
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 2.7e-45 187.6 160 55.6
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 2.7e-45 187.6 160 55.6
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 7.8e-45 186.0 339 70.8
QL07p000892 Quercus lobata HOM05D006106 ORTHO05D007662 1.1e-43 182.2 157 58.0
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 2.5e-43 181.0 157 51.6
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 9.6e-43 179.1 157 51.0
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 1.3e-42 178.7 161 55.9
Glyma.19G138101 Glycine max HOM05D006106 ORTHO05D007662 1.6e-42 178.3 159 53.5
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 2.1e-42 177.9 181 49.7
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 2.8e-42 177.6 157 51.0
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 2.8e-42 177.6 157 51.0
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 3.1e-41 174.1 290 80.3
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 1.5e-40 171.8 160 50.6
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 7.1e-38 162.9 324 69.1
COL.COLO4_28304 Corchorus olitorius HOM05D006106 ORTHO05D007662 7.9e-37 159.5 168 48.2
Pp3c2_1940 Physcomitrium patens HOM05D006106 ORTHO05D007662 5.6e-27 126.7 121 50.4
CiPaw.10G033900 Carya illinoinensis HOM05D006106 ORTHO05D007662 1.0e-23 115.9 65 76.9
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.0e-23 115.9 242 61.2
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 2.2e-23 114.8 220 89.5
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 2.9e-23 114.4 132 43.9
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 3.8e-23 114.0 79 67.1
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 6.5e-23 113.2 132 43.9
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 6.5e-23 113.2 96 57.3
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 3.2e-22 110.9 71 70.4
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 3.9e-20 104.0 169 34.9
Cc11_g03820 Coffea canephora HOM05D006106 ORTHO05D015839 1.6e-18 98.6 63 66.7
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 6.3e-18 96.7 324 54.0
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 8.2e-18 96.3 113 42.5
Cc00_g34390 Coffea canephora HOM05D006106 ORTHO05D007662 5.3e-17 93.6 63 63.5
COL.COLO4_28305 Corchorus olitorius HOM05D006106 ORTHO05D034875 6.9e-17 93.2 63 65.1
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 6.9e-17 93.2 221 86.9
unitig_578.g15981 Utricularia gibba HOM05D006106 ORTHO05D007662 9.0e-17 92.8 80 53.8
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.6e-16 91.3 61 68.9
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 5.9e-16 90.1 220 83.6
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 1.0e-15 89.4 112 44.6
BcaNung06942 Brassica carinata HOM05D006106 ORTHO05D007662 2.5e-14 84.7 104 36.5
CSS0047930 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 3.2e-14 84.3 50 78.0
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.2e-13 82.4 56 67.9
CBR_g50368 Chara braunii HOM05D006106 ORTHO05D007662 2.1e-13 81.6 122 33.6
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 6.1e-13 80.1 41 85.4
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 8.8e-12 76.3 63 54.0
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.1e-11 75.9 63 52.4
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 1.1e-11 75.9 63 50.8
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 5.7e-11 73.6 41 78.0
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 7.4e-11 73.2 41 73.2
Gohir.D05G352075 Gossypium hirsutum HOM05D006106 ORTHO05D007662 4.5e-08 63.9 41 63.4
SEGI_09862 Sequoiadendron giganteum HOM05D006106 ORTHO05D007662 2.2e-07 61.6 63 33.3
Cpa.g.sc224.1 Carica papaya HOM05D006106 ORTHO05D007662 1.9e-06 58.5 45 57.8


User provided reference genes

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