Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 4.1e-159 564.7 286 100.0
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.7e-153 544.3 288 97.2
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.3e-149 533.1 288 94.8
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.3e-149 533.1 288 94.8
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 3.6e-147 525.0 288 93.4
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.0e-146 521.5 288 92.7
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 4.0e-146 521.5 288 92.7
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 3.1e-143 511.9 291 92.1
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 4.7e-139 498.0 284 88.4
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 6.8e-138 494.2 288 87.5
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 5.7e-137 491.1 288 86.5
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 2.8e-136 488.8 288 87.8
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 4.1e-135 485.0 307 82.1
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 4.5e-134 481.5 288 84.4
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 1.3e-133 479.9 288 85.4
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 1.7e-133 479.6 288 85.1
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.7e-133 479.6 288 85.1
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 5.0e-133 478.0 286 85.3
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 6.5e-133 477.6 288 84.4
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 6.5e-133 477.6 288 83.7
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 8.5e-133 477.2 290 84.8
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 2.5e-132 475.7 288 84.4
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 9.4e-132 473.8 289 83.4
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 9.4e-132 473.8 288 83.7
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 4.7e-131 471.5 288 83.7
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 6.1e-131 471.1 290 82.4
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 8.0e-131 470.7 288 83.0
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 1.8e-130 469.5 344 73.5
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 2.3e-130 469.2 288 82.6
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 2.3e-130 469.2 288 82.6
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 5.2e-130 468.0 288 83.0
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 6.8e-130 467.6 288 81.9
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 8.8e-130 467.2 283 83.4
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 8.8e-130 467.2 288 82.6
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.2e-129 466.8 288 82.6
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 1.2e-129 466.8 285 82.8
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 1.5e-129 466.5 279 84.6
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.5e-129 466.5 288 82.6
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 2.0e-129 466.1 279 84.6
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 2.6e-129 465.7 288 82.3
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 3.4e-129 465.3 288 81.6
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.3e-128 463.4 288 81.9
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.7e-128 463.0 288 82.6
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.8e-128 462.2 288 83.0
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 3.7e-128 461.8 288 81.2
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 3.7e-128 461.8 282 84.0
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 6.3e-128 461.1 288 81.2
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 8.3e-128 460.7 288 81.2
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 8.3e-128 460.7 288 80.9
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 1.8e-127 459.5 288 80.9
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 2.4e-127 459.1 288 81.9
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 3.1e-127 458.8 288 81.6
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 4.1e-127 458.4 288 81.6
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 5.4e-127 458.0 288 81.6
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 7.0e-127 457.6 286 81.1
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 7.0e-127 457.6 279 83.5
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 9.2e-127 457.2 312 76.9
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 1.2e-126 456.8 288 80.9
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.7e-126 455.7 286 80.8
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 3.5e-126 455.3 279 83.2
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 3.5e-126 455.3 289 82.0
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 5.9e-126 454.5 286 80.4
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 5.9e-126 454.5 286 80.8
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 7.7e-126 454.1 289 80.6
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 7.7e-126 454.1 289 80.6
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 7.7e-126 454.1 286 80.8
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 7.7e-126 454.1 288 80.2
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.3e-125 453.4 288 81.2
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.7e-125 453.0 289 80.3
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.3e-125 452.6 286 80.1
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 2.9e-125 452.2 286 80.4
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 2.9e-125 452.2 279 82.4
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.9e-125 452.2 288 80.9
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.9e-125 452.2 288 80.2
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 3.8e-125 451.8 286 80.4
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 5.0e-125 451.4 281 81.9
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-124 450.3 287 80.8
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 1.5e-124 449.9 289 79.2
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 1.5e-124 449.9 276 81.2
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 1.9e-124 449.5 277 81.6
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 5.6e-124 448.0 281 80.8
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 9.5e-124 447.2 286 79.4
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 9.5e-124 447.2 258 85.7
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 9.5e-124 447.2 286 79.4
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 1.2e-123 446.8 286 78.3
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 1.2e-123 446.8 281 80.8
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.6e-123 446.4 287 80.1
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 2.1e-123 446.0 281 80.8
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 2.1e-123 446.0 286 80.8
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.1e-123 446.0 286 80.8
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 3.6e-123 445.3 286 79.0
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 3.6e-123 445.3 286 79.0
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 3.6e-123 445.3 286 79.0
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 6.1e-123 444.5 286 79.4
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 8.0e-123 444.1 286 78.3
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 8.0e-123 444.1 286 78.3
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 8.0e-123 444.1 283 79.9
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.0e-122 443.7 286 78.7
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 2.3e-122 442.6 286 78.3
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 6.8e-122 441.0 247 87.4
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 2.0e-121 439.5 286 77.6
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.9e-120 435.6 266 82.3
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.8e-119 433.0 336 69.6
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.2e-118 430.3 345 68.1
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 1.6e-118 429.9 285 77.2
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 2.0e-118 429.5 288 74.3
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 6.6e-117 424.5 288 75.0
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 8.6e-117 424.1 288 74.7
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 1.1e-116 423.7 276 79.3
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 8.9e-114 414.1 230 89.1
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 2.0e-113 412.9 277 79.4
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 2.2e-112 409.5 245 82.4
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 2.7e-110 402.5 342 62.6
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 3.0e-109 399.1 280 70.7
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 6.8e-106 387.9 250 77.6
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.6e-105 386.0 288 70.1
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 5.4e-103 378.3 289 70.2
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 7.3e-100 367.9 288 68.1
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 8.4e-96 354.4 180 97.8
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.3e-93 347.1 281 63.7
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.4e-90 337.0 188 86.2
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 6.8e-90 334.7 277 60.3
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 2.6e-89 332.8 254 63.0
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 6.0e-86 321.6 284 56.7
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.0e-85 319.3 188 83.0
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 4.9e-80 302.0 259 58.3
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.2e-65 254.2 254 49.6
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 6.5e-64 248.4 161 72.7
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 7.1e-63 245.0 183 73.2
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 8.7e-61 238.0 126 92.1
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 1.1e-58 231.1 157 76.4
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 5.3e-58 228.8 153 77.8
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 2.7e-54 216.5 155 73.5
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 3.3e-52 209.5 267 42.7
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 7.2e-47 191.8 275 40.7
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.1e-46 190.3 102 92.2
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.6e-46 189.1 108 88.0
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 6.5e-40 168.7 123 66.7
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.4e-39 167.5 96 87.5
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.6e-33 146.7 250 41.6
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.2e-32 143.7 121 56.2
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 6.1e-30 135.6 128 56.2
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 3.1e-26 123.2 200 37.0
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 7.0e-26 122.1 66 90.9
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 7.0e-18 95.5 78 56.4
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 2.2e-16 90.5 50 86.0
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 5.0e-16 89.4 51 84.3
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 1.1e-15 88.2 49 85.7
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 6.8e-13 79.0 71 50.7
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 2.6e-12 77.0 62 71.0
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 3.7e-11 73.2 279 27.2
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 8.3e-11 72.0 38 89.5
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.8e-10 70.9 35 91.4
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 4.1e-10 69.7 55 70.9


User provided reference genes

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