Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 2.9e-191 671.8 352 100.0
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 7.7e-160 567.4 320 92.5
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.9e-158 562.8 320 91.9
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 2.5e-158 562.4 320 91.6
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 2.1e-157 559.3 320 90.9
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 1.4e-156 556.6 320 90.9
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 3.2e-145 518.8 282 96.8
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 7.3e-142 507.7 308 84.1
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.2e-141 506.9 320 80.6
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 4.7e-141 505.0 308 83.4
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 6.8e-140 501.1 308 82.8
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 6.8e-140 501.1 308 82.8
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 2.0e-139 499.6 319 79.9
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.6e-139 499.2 308 81.8
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 7.5e-139 497.7 320 79.4
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 9.8e-139 497.3 317 80.8
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 3.7e-138 495.4 308 81.5
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 6.4e-138 494.6 320 79.4
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 6.4e-138 494.6 320 79.4
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.4e-137 493.4 308 81.2
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 4.1e-137 491.9 320 78.1
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 7.0e-137 491.1 320 78.4
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.7e-136 489.2 308 80.8
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 2.7e-136 489.2 308 80.8
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 6.0e-136 488.0 308 80.5
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.3e-135 486.9 308 80.5
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 3.0e-135 485.7 308 80.8
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 3.9e-135 485.3 308 79.5
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 5.0e-135 485.0 308 77.9
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 6.6e-135 484.6 308 79.5
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 1.5e-134 483.4 307 79.2
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 1.9e-134 483.0 308 79.5
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.9e-134 483.0 308 78.6
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 3.3e-134 482.3 308 80.2
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 3.3e-134 482.3 320 77.8
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 3.3e-134 482.3 320 76.6
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 4.3e-134 481.9 308 80.2
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 7.3e-134 481.1 320 77.2
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 7.3e-134 481.1 320 77.2
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.2e-133 480.3 308 80.2
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 2.8e-133 479.2 320 77.5
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 2.8e-133 479.2 308 78.6
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 3.6e-133 478.8 308 79.2
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 3.6e-133 478.8 308 79.5
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 3.6e-133 478.8 308 80.2
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 4.7e-133 478.4 312 77.6
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 4.7e-133 478.4 312 77.6
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 6.2e-133 478.0 308 79.2
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 1.4e-132 476.9 308 77.3
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 2.3e-132 476.1 320 76.9
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 2.3e-132 476.1 320 77.2
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 2.3e-132 476.1 320 76.6
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 4.0e-132 475.3 320 76.2
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 4.0e-132 475.3 318 77.0
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 6.8e-132 474.6 320 75.9
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 8.9e-132 474.2 308 78.9
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 8.9e-132 474.2 308 78.9
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 1.2e-131 473.8 320 76.6
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 1.2e-131 473.8 308 79.5
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.2e-131 473.8 318 76.1
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.5e-131 473.4 308 77.9
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 4.4e-131 471.9 306 77.8
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 4.4e-131 471.9 320 74.7
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 5.8e-131 471.5 313 76.7
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 9.8e-131 470.7 320 75.0
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.7e-130 469.9 308 78.6
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 2.9e-130 469.2 308 77.6
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.9e-130 469.2 308 79.2
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 4.9e-130 468.4 320 75.3
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 4.9e-130 468.4 308 78.9
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.4e-129 466.8 320 75.6
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 1.9e-129 466.5 308 74.7
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 2.4e-129 466.1 320 75.3
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 4.1e-129 465.3 290 82.4
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 9.2e-129 464.2 317 76.3
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.7e-128 462.6 320 74.4
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 3.5e-128 462.2 321 74.1
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 4.6e-128 461.8 307 77.9
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 6.0e-128 461.5 317 76.0
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 5.1e-127 458.4 306 77.5
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 6.6e-127 458.0 308 75.3
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.1e-126 457.2 320 73.1
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.1e-126 457.2 308 75.0
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.5e-126 456.8 308 75.0
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.9e-126 456.4 306 77.1
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 3.3e-126 455.7 320 72.5
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 7.3e-126 454.5 320 72.5
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 9.5e-126 454.1 308 74.7
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 9.5e-126 454.1 320 72.5
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.2e-125 453.8 306 76.1
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.2e-125 453.8 317 76.3
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.6e-125 453.4 282 81.2
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 2.1e-125 453.0 308 74.0
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 4.7e-125 451.8 320 72.5
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 1.4e-124 450.3 308 73.7
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 2.3e-124 449.5 308 73.7
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 6.8e-124 448.0 320 73.1
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 6.8e-124 448.0 320 73.1
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 8.9e-124 447.6 308 73.4
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 8.9e-124 447.6 308 73.4
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 8.9e-124 447.6 308 73.4
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 2.6e-123 446.0 320 72.2
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.3e-122 443.7 308 72.4
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 3.5e-112 409.1 338 66.0
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 7.8e-112 407.9 264 79.5
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 5.6e-110 401.7 281 74.7
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 4.4e-107 392.1 308 67.5
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.7e-106 390.2 273 72.9
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.2e-105 386.0 320 65.0
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 3.9e-103 379.0 279 72.8
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 9.9e-99 364.4 314 61.5
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 8.4e-98 361.3 314 60.8
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 9.3e-97 357.8 316 60.1
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 8.7e-95 351.3 283 66.1
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 9.6e-94 347.8 306 59.8
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.0e-90 337.8 308 58.4
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.9e-90 336.3 306 57.2
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.4e-81 307.4 309 56.6
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 3.5e-80 302.8 243 67.1
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.5e-80 302.8 309 55.7
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 2.1e-72 276.9 316 50.3
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.7e-72 276.6 309 53.7
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 3.6e-72 276.2 301 50.8
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 3.0e-71 273.1 273 55.7
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 3.4e-67 259.6 326 51.5
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 1.8e-63 247.3 320 46.2
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 1.4e-55 221.1 307 46.9
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 4.4e-54 216.1 150 73.3
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 2.0e-46 190.7 222 50.5
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.9e-42 176.8 164 55.5
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 1.5e-41 174.5 222 48.6
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.1e-25 121.7 73 89.0
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.3e-21 105.5 87 69.0
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.8e-16 90.5 102 50.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 2.6e-14 84.0 75 53.3
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.4e-12 77.4 149 37.6
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 9.2e-12 75.5 59 59.3
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.5e-11 73.6 65 60.0
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.9e-07 58.9 56 57.1
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 5.8e-06 56.2 51 51.0
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.6e-06 55.8 40 67.5


User provided reference genes

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