Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.1e-119 433.3 218 100.0
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.7e-96 355.1 218 84.4
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 1.1e-79 300.4 222 73.4
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 7.1e-79 297.7 208 76.9
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 1.5e-76 290.0 221 72.9
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 1.2e-70 270.4 209 71.8
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 1.2e-54 217.2 140 74.3
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 5.1e-53 211.8 163 66.3
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 7.4e-52 208.0 188 59.6
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.1e-51 206.5 184 59.2
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 3.7e-51 205.7 182 59.9
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 6.2e-51 204.9 167 62.3
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 6.2e-51 204.9 184 58.7
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 1.1e-50 204.1 168 63.7
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 1.4e-50 203.8 165 64.8
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 3.1e-50 202.6 140 70.7
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 6.9e-50 201.4 186 58.6
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.0e-49 199.9 167 60.5
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 2.6e-49 199.5 144 63.9
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 2.2e-48 196.4 186 56.5
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 2.9e-48 196.1 186 57.0
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 2.9e-48 196.1 135 67.4
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 1.1e-47 194.1 159 61.0
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 1.1e-47 194.1 164 60.4
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.9e-47 193.4 130 73.1
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.9e-47 193.4 124 79.0
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 1.9e-47 193.4 138 68.8
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 2.5e-47 193.0 174 60.9
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 5.5e-47 191.8 174 58.6
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 5.5e-47 191.8 132 67.4
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 1.2e-46 190.7 173 56.6
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 2.1e-46 189.9 151 64.2
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 2.7e-46 189.5 182 56.6
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 2.7e-46 189.5 132 65.9
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.5e-46 189.1 131 67.2
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 4.6e-46 188.7 190 56.3
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 6.0e-46 188.3 166 55.4
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 1.3e-45 187.2 171 58.5
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 2.3e-45 186.4 172 58.1
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.0e-45 186.0 165 57.6
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 3.0e-45 186.0 163 57.7
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 3.9e-45 185.7 129 69.8
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 6.7e-45 184.9 156 61.5
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 1.1e-44 184.1 157 60.5
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 1.1e-44 184.1 157 60.5
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.5e-44 183.0 166 53.6
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 3.3e-44 182.6 142 61.3
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 7.4e-44 181.4 157 58.6
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 9.6e-44 181.0 134 64.9
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 1.3e-43 180.6 192 53.1
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 2.8e-43 179.5 132 64.4
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 4.8e-43 178.7 166 59.0
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 6.3e-43 178.3 160 57.5
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 1.1e-42 177.6 157 58.6
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 1.4e-42 177.2 133 65.4
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 2.4e-42 176.4 131 64.9
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 5.3e-42 175.3 150 60.0
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 6.9e-42 174.9 135 63.0
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 1.5e-41 173.7 157 57.3
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 3.4e-41 172.6 132 62.9
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 5.0e-40 168.7 106 72.6
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 6.5e-40 168.3 104 73.1
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 4.2e-39 165.6 137 61.3
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 9.3e-39 164.5 135 59.3
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 1.2e-38 164.1 133 64.7
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 2.7e-38 162.9 166 53.0
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 3.6e-38 162.5 143 56.6
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 7.9e-38 161.4 143 55.2
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 3.9e-37 159.1 133 60.9
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 8.7e-37 157.9 168 48.8
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 1.5e-36 157.1 151 54.3
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 5.7e-36 155.2 132 56.8
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 9.7e-36 154.5 108 66.7
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 2.2e-35 153.3 132 56.8
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 3.7e-35 152.5 132 56.8
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 4.8e-35 152.1 189 46.0
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 4.8e-35 152.1 181 47.5
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 4.8e-35 152.1 182 47.3
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 4.8e-35 152.1 151 51.7
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 4.8e-35 152.1 151 51.7
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.1e-34 151.0 125 60.8
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 1.8e-34 150.2 131 56.5
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 1.8e-34 150.2 128 60.2
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 2.4e-34 149.8 182 47.3
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 2.4e-34 149.8 167 48.5
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 2.4e-34 149.8 129 57.4
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 2.4e-34 149.8 129 56.6
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 3.1e-34 149.4 164 51.8
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 5.3e-34 148.7 105 64.8
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 1.0e-32 144.4 97 73.2
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 8.5e-32 141.4 123 59.3
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 8.5e-32 141.4 181 45.9
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 7.2e-31 138.3 123 58.5
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 5.7e-28 128.6 137 43.1
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 2.2e-27 126.7 100 63.0
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 3.7e-27 125.9 112 58.0
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 3.1e-26 122.9 147 40.8
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.2e-25 120.9 206 38.3
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.6e-25 119.8 81 67.9
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.6e-25 119.8 81 67.9
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 2.9e-24 116.3 92 63.0
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 8.5e-24 114.8 159 41.5
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.2e-22 110.9 138 44.2
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 2.1e-22 110.2 145 40.0
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 3.6e-22 109.4 137 43.8
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 7.9e-22 108.2 67 71.6
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 3.0e-21 106.3 167 35.3
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 3.9e-21 105.9 181 40.3
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.6e-20 103.2 80 61.2
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 5.7e-20 102.1 167 38.9
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.4e-18 97.4 109 51.4
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 4.1e-18 95.9 155 40.0
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 4.7e-14 82.4 139 41.0
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 4.7e-14 82.4 57 63.2
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 2.8e-11 73.2 76 53.9
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.3e-08 64.3 69 49.3
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.5e-07 60.8 38 68.4
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.5e-07 60.8 36 75.0


User provided reference genes

Program Settings