Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 2056.6 1054 100.0
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1890.5 1111 89.9
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1840.1 1077 89.0
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1839.7 1077 89.2
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1835.1 1077 89.0
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1771.1 1077 85.7
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1691.0 1058 83.5
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1688.7 1076 80.9
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1685.2 1071 81.2
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1679.5 1073 80.8
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1660.2 1055 81.0
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1654.4 1077 79.9
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1654.4 1073 79.6
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1649.4 1078 80.4
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1634.8 1081 78.1
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1634.0 1084 79.2
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1629.4 1056 80.0
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1619.4 1055 79.3
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1619.4 1077 78.6
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1619.0 1085 78.2
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1613.2 1077 76.7
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1609.0 1077 77.2
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1609.0 1078 78.3
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1607.4 1071 77.1
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1607.0 1061 79.3
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1600.1 1073 77.7
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1597.8 1082 77.2
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1595.5 1079 76.7
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1592.0 1081 76.9
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1582.4 1081 76.6
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1582.4 1081 76.7
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1582.0 1073 77.0
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1582.0 1080 76.2
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1581.2 1073 77.0
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1580.1 1104 75.3
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1578.9 1097 76.3
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1577.8 1088 76.3
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1577.8 1080 76.1
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1574.3 1077 76.3
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1573.9 1091 76.3
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1573.9 1097 76.1
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1573.9 1076 75.9
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1569.7 1083 76.2
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1568.1 1084 75.8
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1565.1 1083 76.0
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1562.4 1097 75.8
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1554.7 1091 75.9
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1552.0 1075 75.0
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1545.8 1078 75.0
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1541.9 1089 74.9
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1534.2 1098 73.8
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1530.8 1079 74.6
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1528.1 1085 75.0
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1528.1 1077 74.2
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1526.1 1077 73.7
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1524.2 1063 74.8
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1520.8 1069 74.3
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1518.4 1090 74.3
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1515.4 1085 73.0
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1514.2 1090 73.2
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1513.8 1086 74.2
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1512.3 1087 73.4
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1511.1 1078 73.8
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1509.6 1088 72.9
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1505.3 1090 72.8
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1502.3 1086 73.1
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1500.7 1084 72.9
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1500.3 1092 72.0
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1498.0 1096 72.4
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1494.9 1086 73.1
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1491.5 1091 71.8
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1491.1 1083 72.7
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1490.3 1085 73.0
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1489.6 1083 72.5
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1489.2 1090 71.5
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1488.8 1086 71.4
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1488.8 1085 72.9
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1488.0 1090 71.2
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1486.9 1093 71.4
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1485.7 1183 67.9
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1481.5 1089 71.5
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1480.7 1089 71.7
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1479.9 1088 70.9
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1479.9 1091 73.0
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1475.3 1089 71.3
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1472.2 1087 71.8
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1471.1 1090 71.2
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1468.4 1126 70.3
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1466.4 1128 70.0
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1464.1 949 80.0
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1463.7 1093 70.5
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1463.7 1093 70.5
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1459.1 1090 70.6
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1458.4 1100 70.3
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1456.8 1059 71.1
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1456.4 1094 70.1
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1454.5 1094 70.0
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1449.5 1071 70.8
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1446.4 1093 69.8
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1441.8 1071 70.6
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1424.1 1097 68.6
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1400.6 1063 68.8
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1379.4 1062 70.3
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1373.6 1080 68.6
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1367.1 1076 68.5
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1348.2 965 72.2
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1299.6 1069 66.0
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1271.5 1051 65.2
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1258.0 1049 64.3
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1256.9 997 65.9
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1211.4 1055 60.8
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1158.7 861 70.0
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 1.4e-310 1069.7 1063 54.8
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 2.8e-306 1055.4 1062 55.1
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 5.3e-297 1024.6 788 70.6
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.7e-292 1007.3 1028 55.7
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.5e-288 996.5 1066 52.1
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 4.6e-285 984.9 1059 50.3
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 2.2e-279 966.1 665 78.3
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 2.6e-272 942.6 750 65.3
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 1.1e-270 937.2 750 65.6
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-269 933.7 980 55.4
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 8.3e-258 894.4 1073 50.1
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 2.5e-254 882.9 1079 50.1
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 4.4e-251 872.1 1066 49.1
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 2.2e-250 869.8 657 69.1
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.0e-227 793.5 594 70.9
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 1.6e-221 773.9 514 78.6
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 2.9e-218 763.1 482 84.6
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 3.8e-186 656.4 1069 41.7
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 5.3e-180 636.0 475 70.7
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 2.5e-174 617.1 1059 39.6
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 3.6e-168 596.7 399 75.2
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 2.3e-167 594.0 413 74.8
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.6e-163 580.5 519 62.6
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 3.2e-161 573.5 454 65.6
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 1.1e-158 565.1 560 53.9
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.2e-154 550.8 413 66.3
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 3.0e-151 540.4 1107 34.3
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 1.2e-139 501.9 528 56.6
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.1e-136 489.6 373 68.9
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.8e-135 486.1 367 69.2
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.8e-135 486.1 367 69.2
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 8.9e-135 485.7 566 50.9
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 9.2e-132 475.7 356 68.5
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-128 465.3 387 66.1
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 4.7e-120 436.8 657 43.1
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 3.3e-113 414.1 624 42.5
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 2.1e-112 411.4 275 74.5
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 3.0e-106 391.0 1089 29.6
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 5.1e-106 390.2 290 67.2
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 6.4e-101 373.2 279 68.8
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.0e-87 327.4 494 44.3
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 2.7e-83 314.7 400 49.5
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 4.0e-79 300.8 525 35.6
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 3.5e-75 287.7 195 76.4
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 9.3e-68 263.1 183 76.5
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.1e-65 256.1 229 60.3
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 3.7e-64 251.1 419 42.2
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 1.0e-61 243.0 138 87.7
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.4e-60 236.5 220 59.5
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.3e-57 228.0 304 46.1
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 2.6e-46 191.8 135 73.3
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 2.1e-43 182.2 187 58.3
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 8.8e-42 176.8 202 49.5
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 1.1e-41 176.4 143 67.8
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 5.7e-41 174.1 225 43.6
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 7.2e-36 157.1 176 53.4
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 9.4e-36 156.8 162 58.0
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 2.7e-35 155.2 266 41.0
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.0e-35 153.7 129 65.1
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 2.8e-32 145.2 248 40.3
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 5.5e-28 131.0 91 73.6
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 5.5e-20 104.4 128 46.1
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 1.2e-17 96.7 66 69.7
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.2e-14 86.7 54 79.6
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.5e-09 69.7 59 52.5
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 7.8e-06 57.4 62 50.0


User provided reference genes

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