Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 5.3e-215 750.7 376 100.0
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.6e-192 676.0 457 79.0
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 1.3e-184 649.8 441 76.2
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 4.1e-183 644.8 456 74.6
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 6.9e-183 644.0 441 78.2
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 3.0e-178 628.6 445 74.6
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 5.1e-178 627.9 441 74.6
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 6.3e-168 594.3 443 67.7
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 4.1e-167 591.7 443 67.5
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 7.0e-167 590.9 443 67.9
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 2.6e-166 589.0 441 67.3
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.9e-164 582.8 442 67.2
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 4.2e-164 581.6 443 67.3
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 2.7e-163 578.9 446 66.6
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 6.1e-163 577.8 423 68.1
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 3.0e-162 575.5 443 65.7
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 4.0e-162 575.1 423 67.1
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 6.8e-162 574.3 423 67.4
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 1.5e-161 573.2 446 66.1
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 2.6e-161 572.4 423 67.4
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 4.4e-161 571.6 444 65.3
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 4.8e-160 568.2 436 66.3
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 6.3e-160 567.8 443 64.6
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.1e-159 567.0 443 65.2
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 1.4e-159 566.6 444 64.6
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 4.1e-159 565.1 438 64.8
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 2.0e-158 562.8 434 66.1
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 4.5e-158 561.6 444 64.6
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 4.5e-158 561.6 443 65.2
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 7.7e-158 560.8 434 65.7
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 1.3e-157 560.1 476 62.4
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 2.2e-157 559.3 444 64.2
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 2.2e-157 559.3 442 64.0
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 4.7e-155 551.6 444 63.3
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 8.8e-154 547.4 441 63.3
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 8.8e-154 547.4 441 63.0
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 4.4e-153 545.0 436 63.1
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 5.7e-153 544.7 436 63.1
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 7.5e-153 544.3 436 63.1
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 9.8e-153 543.9 445 62.9
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 1.3e-152 543.5 436 63.1
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 3.7e-152 542.0 436 63.3
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 4.9e-152 541.6 444 62.4
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 8.3e-152 540.8 436 63.1
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 1.4e-151 540.0 436 62.8
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 9.1e-151 537.3 437 63.2
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.2e-150 537.0 436 61.7
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 2.0e-150 536.2 437 63.2
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 2.0e-150 536.2 437 62.9
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 7.7e-150 534.3 423 65.0
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 1.3e-149 533.5 437 62.9
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 2.9e-149 532.3 442 61.5
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 5.0e-149 531.6 442 62.4
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 8.6e-149 530.8 443 62.1
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 8.6e-149 530.8 441 59.4
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 1.1e-148 530.4 441 61.5
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 2.5e-148 529.3 433 62.6
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 5.5e-148 528.1 452 59.5
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 9.5e-148 527.3 433 62.8
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 9.5e-148 527.3 433 62.8
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.2e-147 526.9 433 62.8
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 8.0e-147 524.2 428 62.6
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 8.0e-147 524.2 433 62.1
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 1.4e-146 523.5 438 61.2
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 4.0e-146 521.9 436 60.3
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 5.2e-146 521.5 456 57.7
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 1.5e-145 520.0 443 58.5
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.5e-145 520.0 435 61.1
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 1.5e-145 520.0 433 62.1
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 4.4e-145 518.5 438 60.7
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 7.5e-145 517.7 412 63.8
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 9.8e-145 517.3 428 61.7
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 3.7e-144 515.4 428 62.6
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 5.4e-143 511.5 441 60.1
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 7.0e-143 511.1 445 57.8
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 2.0e-142 509.6 428 60.0
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 4.6e-142 508.4 433 58.9
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 5.9e-142 508.1 417 61.6
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 2.9e-141 505.8 440 58.4
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 2.9e-141 505.8 424 62.0
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 3.3e-140 502.3 428 59.1
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 5.6e-140 501.5 428 57.9
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 9.5e-140 500.7 440 58.0
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 2.8e-139 499.2 437 59.5
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 3.6e-139 498.8 360 73.1
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 6.1e-139 498.0 428 57.2
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 1.8e-138 496.5 433 59.4
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 1.2e-137 493.8 442 57.7
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 4.4e-137 491.9 442 57.2
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 9.8e-137 490.7 427 58.1
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 1.7e-136 490.0 442 57.0
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 2.9e-136 489.2 435 57.9
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 3.7e-136 488.8 432 57.4
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 8.3e-136 487.6 445 56.4
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 7.0e-135 484.6 443 56.4
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 9.2e-135 484.2 379 66.0
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 1.6e-134 483.4 430 59.5
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 6.0e-134 481.5 443 55.8
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.0e-133 480.7 443 56.0
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.3e-132 475.7 430 57.4
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 3.3e-132 475.7 447 55.0
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 3.3e-132 475.7 395 62.5
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 7.3e-132 474.6 445 56.2
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 1.2e-131 473.8 430 57.0
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.2e-131 473.8 430 57.0
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 1.6e-131 473.4 446 55.4
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 2.1e-131 473.0 445 55.7
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 2.8e-131 472.6 446 55.8
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 1.8e-130 469.9 444 55.2
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.3e-130 469.5 430 56.7
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 4.0e-130 468.8 430 56.7
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 6.8e-130 468.0 443 54.2
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 8.9e-130 467.6 459 53.2
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 3.4e-129 465.7 444 54.5
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.3e-128 463.8 395 59.0
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.6e-126 456.8 415 57.6
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 1.2e-123 447.2 455 51.9
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 6.2e-123 444.9 432 54.9
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 5.2e-122 441.8 410 54.1
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 9.9e-121 437.6 399 60.4
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 7.1e-119 431.4 363 65.3
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 1.7e-117 426.8 443 51.2
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 1.7e-117 426.8 439 53.1
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 5.6e-116 421.8 440 52.3
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 2.6e-113 412.9 438 50.2
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 1.3e-99 367.5 501 43.7
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 5.8e-97 358.6 317 61.8
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 9.3e-95 351.3 545 38.9
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 9.3e-95 351.3 430 44.7
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 2.2e-88 330.1 409 44.7
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 5.5e-87 325.5 253 61.7
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.0e-85 321.2 317 57.1
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 3.1e-82 309.7 344 51.2
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 3.4e-81 306.2 310 52.9
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 6.1e-78 295.4 326 49.4
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 7.4e-68 261.9 434 36.6
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.8e-58 230.7 475 35.6
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.2e-57 228.0 153 70.6
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 4.0e-53 213.0 256 47.3
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 3.8e-48 196.4 161 59.6
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.7e-43 181.0 118 72.0
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 1.9e-39 167.5 182 54.4
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 7.2e-39 165.6 115 68.7
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 9.4e-39 165.2 115 68.7
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.8e-32 143.3 74 79.7
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 1.1e-31 141.7 327 34.6
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 2.6e-28 130.6 69 76.8
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 7.8e-25 119.0 152 48.7
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 7.8e-25 119.0 78 71.8
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 2.3e-24 117.5 115 54.8
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 2.1e-22 110.9 158 48.7
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 6.2e-22 109.4 76 65.8
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 1.5e-20 104.8 119 56.3
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 1.5e-20 104.8 118 46.6
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 2.2e-19 100.9 69 71.0
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 1.0e-16 92.0 65 66.2
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 1.1e-13 82.0 56 64.3
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 4.0e-13 80.1 148 38.5
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 2.0e-12 77.8 82 51.2
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 3.9e-08 63.5 44 72.7
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 8.6e-08 62.4 41 70.7
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 5.6e-07 59.7 34 82.4


User provided reference genes

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