Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007820g0010 Nicotiana tabacum HOM05D003245 ORTHO05D004125 6.0e-68 260.8 137 100.0
Nitab4.5_0004307g0020 Nicotiana tabacum HOM05D003245 ORTHO05D004125 1.5e-47 193.0 136 82.4
Peaxi162Scf00231g00812 Petunia axillaris HOM05D003245 ORTHO05D004125 2.0e-47 192.6 136 81.6
Solyc07g018220.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 5.9e-47 191.0 136 80.9
Sopen07g007320 Solanum pennellii HOM05D003245 ORTHO05D004125 5.9e-47 191.0 136 80.9
Sopen07g007330 Solanum pennellii HOM05D003245 ORTHO05D004125 5.9e-47 191.0 136 80.9
PGSC0003DMG400002422 Solanum tuberosum HOM05D003245 ORTHO05D004125 5.9e-47 191.0 136 80.9
PGSC0003DMG401002421 Solanum tuberosum HOM05D003245 ORTHO05D004125 5.9e-47 191.0 136 80.9
CAN.G5.10 Capsicum annuum HOM05D003245 ORTHO05D004125 7.7e-47 190.7 136 80.1
Solyc07g018210.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 7.7e-47 190.7 136 80.1
Cc06_g13310 Coffea canephora HOM05D003245 ORTHO05D004125 2.2e-46 189.1 136 80.1
Actinidia35994 Actinidia chinensis HOM05D003245 ORTHO05D004125 3.8e-46 188.3 136 78.7
CAN.G32.5 Capsicum annuum HOM05D003245 ORTHO05D004125 3.8e-46 188.3 136 79.4
Lj7A472T61 Lonicera japonica HOM05D003245 ORTHO05D004125 5.0e-46 188.0 136 77.9
Lj4g0022126 Lotus japonicus HOM05D003245 ORTHO05D004125 6.5e-46 187.6 136 79.4
Cpa.g.sc95.57 Carica papaya HOM05D003245 ORTHO05D004125 1.1e-45 186.8 136 77.9
Dinv41253 Davidia involucrata HOM05D003245 ORTHO05D004125 1.1e-45 186.8 136 77.2
PSO541G0246 Papaver somniferum HOM05D003245 ORTHO05D004125 1.1e-45 186.8 136 77.9
PSO675G6578 Papaver somniferum HOM05D003245 ORTHO05D004125 1.1e-45 186.8 136 77.9
Cfa013513 Carpinus fangiana HOM05D003245 ORTHO05D004125 1.4e-45 186.4 136 77.9
Haze_22109 Corylus avellana HOM05D003245 ORTHO05D004125 1.4e-45 186.4 136 77.9
Dinv42729 Davidia involucrata HOM05D003245 ORTHO05D004125 1.4e-45 186.4 136 77.2
Dinv43372 Davidia involucrata HOM05D003245 ORTHO05D004125 1.4e-45 186.4 136 77.2
Phvul.003G146500 Phaseolus vulgaris HOM05D003245 ORTHO05D004125 1.4e-45 186.4 136 78.7
Sed0003509 Sechium edule HOM05D003245 ORTHO05D004125 1.4e-45 186.4 136 77.2
VMungo1215G1658 Vigna mungo HOM05D003245 ORTHO05D004125 1.4e-45 186.4 136 78.7
Eucgr.C02287 Eucalyptus grandis HOM05D003245 ORTHO05D004125 1.9e-45 186.0 136 77.9
arahy.Tifrunner.gnm1.ann1.6TSM6Q Arachis hypogaea HOM05D003245 ORTHO05D004125 2.5e-45 185.7 136 77.9
arahy.Tifrunner.gnm1.ann1.LWG93W Arachis hypogaea HOM05D003245 ORTHO05D004125 2.5e-45 185.7 136 77.9
ClCG01G005520 Citrullus lanatus HOM05D003245 ORTHO05D004125 2.5e-45 185.7 136 77.2
MELO3C005378.2 Cucumis melo HOM05D003245 ORTHO05D004125 2.5e-45 185.7 136 77.2
Duzib192G0054 Durio zibethinus HOM05D003245 ORTHO05D004125 2.5e-45 185.7 136 77.2
Duzib235G0677 Durio zibethinus HOM05D003245 ORTHO05D004125 2.5e-45 185.7 136 77.2
Thecc.06G060900 Theobroma cacao HOM05D003245 ORTHO05D004125 2.5e-45 185.7 136 77.2
GSVIVG01029199001 Vitis vinifera HOM05D003245 ORTHO05D004125 2.5e-45 185.7 136 76.5
Ca_21218_v3 Cicer arietinum L. HOM05D003245 ORTHO05D004125 3.2e-45 185.3 136 77.9
CsaV3_5G005750 Cucumis sativus L. HOM05D003245 ORTHO05D004125 3.2e-45 185.3 136 76.5
BcaNung03004 Brassica carinata HOM05D003245 ORTHO05D004125 4.2e-45 184.9 136 77.9
CANSAT11G2281 Cannabis sativa HOM05D003245 ORTHO05D004125 4.2e-45 184.9 136 77.2
Ciclev10009141m.g Citrus clementina HOM05D003245 ORTHO05D004125 4.2e-45 184.9 136 76.5
THA.LOC104819980 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 4.2e-45 184.9 136 76.5
BcaC09g51810 Brassica carinata HOM05D003245 ORTHO05D004125 5.5e-45 184.5 136 77.2
A01p07880 Brassica napus HOM05D003245 ORTHO05D004125 5.5e-45 184.5 136 77.2
C01p08790 Brassica napus HOM05D003245 ORTHO05D004125 5.5e-45 184.5 136 77.2
BolC1t00869H Brassica oleracea HOM05D003245 ORTHO05D004125 5.5e-45 184.5 136 77.2
BraA01t00734Z Brassica rapa HOM05D003245 ORTHO05D004125 5.5e-45 184.5 136 77.2
CARHR238170 Cardamine hirsuta HOM05D003245 ORTHO05D004125 5.5e-45 184.5 136 77.2
Thhalv10025913m.g Eutrema salsugineum HOM05D003245 ORTHO05D004125 5.5e-45 184.5 136 77.2
Glyma.13G096100 Glycine max HOM05D003245 ORTHO05D004125 5.5e-45 184.5 136 77.9
Medtr4g128290 Medicago truncatula HOM05D003245 ORTHO05D004125 5.5e-45 184.5 136 77.9
Sp7g28140 Schrenkiella parvula HOM05D003245 ORTHO05D004125 5.5e-45 184.5 136 77.2
TPR.G5416 Trifolium pratense HOM05D003245 ORTHO05D004125 5.5e-45 184.5 136 77.9
Atru.chr7.659 Acer truncatum HOM05D003245 ORTHO05D004125 7.2e-45 184.1 136 77.2
EL10Ac8g19425 Beta vulgaris HOM05D003245 ORTHO05D004125 7.2e-45 184.1 136 77.9
CSS0017554 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 7.2e-45 184.1 136 76.5
AUR62040631 Chenopodium quinoa HOM05D003245 ORTHO05D004125 7.2e-45 184.1 136 77.2
HanXRQChr09g0254481 Helianthus annuus HOM05D003245 ORTHO05D004125 7.2e-45 184.1 136 77.2
ECA240G1971 Erigeron canadensis HOM05D003245 ORTHO05D004125 9.4e-45 183.7 136 76.5
HanXRQChr09g0245001 Helianthus annuus HOM05D003245 ORTHO05D004125 9.4e-45 183.7 136 76.5
Hma1.2p1_2478F.1_g322920 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 9.4e-45 183.7 136 76.5
Lsat_1_v5_gn_7_54500 Lactuca sativa HOM05D003245 ORTHO05D004125 9.4e-45 183.7 135 76.3
Manes.14G150500 Manihot esculenta HOM05D003245 ORTHO05D004125 1.6e-44 183.0 136 77.2
Nn2g12708 Nelumbo nucifera HOM05D003245 ORTHO05D004125 2.1e-44 182.6 136 75.7
Potri.018G093800 Populus trichocarpa HOM05D003245 ORTHO05D004125 2.1e-44 182.6 136 76.5
TAR383G0562 Trochodendron aralioides HOM05D003245 ORTHO05D004125 2.1e-44 182.6 136 75.7
Ah.08g212150 Amaranthus hybridus HOM05D003245 ORTHO05D004125 2.7e-44 182.2 136 76.5
QL02p097606 Quercus lobata HOM05D003245 ORTHO05D004125 2.7e-44 182.2 135 77.0
Rhsim01G0005500 Rhododendron simsii HOM05D003245 ORTHO05D004125 2.7e-44 182.2 136 75.7
vmacro13120 Vaccinium macrocarpon HOM05D003245 ORTHO05D004125 3.6e-44 181.8 136 75.0
Gohir.D10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 4.6e-44 181.4 136 74.3
Gorai.011G003600 Gossypium raimondii HOM05D003245 ORTHO05D004125 4.6e-44 181.4 136 74.3
Lsat_1_v5_gn_8_67041 Lactuca sativa HOM05D003245 ORTHO05D004125 4.6e-44 181.4 136 74.3
BraA08t33893Z Brassica rapa HOM05D003245 ORTHO05D004125 6.1e-44 181.0 136 76.5
Carub.0007s1035 Capsella rubella HOM05D003245 ORTHO05D004125 6.1e-44 181.0 136 77.2
CiPaw.08G036800 Carya illinoinensis HOM05D003245 ORTHO05D004125 6.1e-44 181.0 136 76.5
Lalb_Chr07g0180421 Lupinus albus HOM05D003245 ORTHO05D004125 6.1e-44 181.0 136 76.5
AL7G21890 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 7.9e-44 180.6 136 76.5
BcaB03g12640 Brassica carinata HOM05D003245 ORTHO05D004125 7.9e-44 180.6 136 76.5
BcaC01g01161 Brassica carinata HOM05D003245 ORTHO05D004125 7.9e-44 180.6 136 76.5
A08p19320 Brassica napus HOM05D003245 ORTHO05D004125 7.9e-44 180.6 136 76.5
C03p88780 Brassica napus HOM05D003245 ORTHO05D004125 7.9e-44 180.6 136 76.5
BolC3t21189H Brassica oleracea HOM05D003245 ORTHO05D004125 7.9e-44 180.6 136 76.5
ECA236G4509 Erigeron canadensis HOM05D003245 ORTHO05D004125 7.9e-44 180.6 136 75.0
Migut.K00245 Erythranthe guttata HOM05D003245 ORTHO05D004125 7.9e-44 180.6 136 76.5
PGR102G0922 Punica granatum HOM05D003245 ORTHO05D004125 7.9e-44 180.6 136 75.7
TWI12G0425 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 7.9e-44 180.6 136 76.5
MD13G1256000 Malus domestica HOM05D003245 ORTHO05D004125 1.0e-43 180.3 136 76.5
Os01g0867700 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 1.0e-43 180.3 136 74.3
Zm00001eb146670 Zea mays HOM05D003245 ORTHO05D004125 1.0e-43 180.3 136 74.3
Lalb_Chr12g0199351 Lupinus albus HOM05D003245 ORTHO05D004125 1.4e-43 179.9 136 76.5
Prupe.1G086600 Prunus persica HOM05D003245 ORTHO05D004125 1.4e-43 179.9 136 75.7
AT2G18840 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 1.8e-43 179.5 136 76.5
Carub.0003s3307 Capsella rubella HOM05D003245 ORTHO05D004125 1.8e-43 179.5 136 76.5
CARHR109400 Cardamine hirsuta HOM05D003245 ORTHO05D004125 1.8e-43 179.5 136 76.5
Gohir.A05G113700 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.8e-43 179.5 136 74.3
Sabra18G0080700 Salix brachista HOM05D003245 ORTHO05D004125 1.8e-43 179.5 136 75.0
Sp3g32300 Schrenkiella parvula HOM05D003245 ORTHO05D004125 1.8e-43 179.5 136 76.5
AL3G53110 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 2.3e-43 179.1 136 76.5
AT4G30260 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 2.3e-43 179.1 136 76.5
THA.LOC104803937 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 2.3e-43 179.1 136 74.3
TWI12G0523 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 2.3e-43 179.1 136 75.7
FvH4_4g09840 Fragaria vesca HOM05D003245 ORTHO05D004125 3.0e-43 178.7 136 75.0
FAN07G1981 Fragaria x ananassa HOM05D003245 ORTHO05D004125 3.0e-43 178.7 136 75.0
FAN12G1523 Fragaria x ananassa HOM05D003245 ORTHO05D004125 3.0e-43 178.7 136 75.0
FAN12G3343 Fragaria x ananassa HOM05D003245 ORTHO05D004125 3.0e-43 178.7 136 75.0
FAN22G0867 Fragaria x ananassa HOM05D003245 ORTHO05D004125 3.0e-43 178.7 136 75.0
RcHm_v2.0_Chr4g0402611 Rosa chinensis HOM05D003245 ORTHO05D004125 3.0e-43 178.7 136 75.0
Aa31LG8G15930 Aethionema arabicum HOM05D003245 ORTHO05D004125 3.9e-43 178.3 136 75.0
Hund22399 Selenicereus undatus HOM05D003245 ORTHO05D004125 3.9e-43 178.3 136 74.3
MSTRG.19702 Avicennia marina HOM05D003245 ORTHO05D004125 5.1e-43 177.9 136 75.0
MSTRG.6209 Avicennia marina HOM05D003245 ORTHO05D004125 5.1e-43 177.9 136 75.0
Gohir.D05G114100 Gossypium hirsutum HOM05D003245 ORTHO05D004125 6.7e-43 177.6 136 73.5
Gorai.009G118100 Gossypium raimondii HOM05D003245 ORTHO05D004125 6.7e-43 177.6 136 73.5
Lj9C686G6 Lonicera japonica HOM05D003245 ORTHO05D004125 6.7e-43 177.6 136 74.3
Potri.006G169200 Populus trichocarpa HOM05D003245 ORTHO05D004125 6.7e-43 177.6 136 75.0
Sabra06G0130400 Salix brachista HOM05D003245 ORTHO05D004125 6.7e-43 177.6 136 75.0
MD13G1256300 Malus domestica HOM05D003245 ORTHO05D004125 8.8e-43 177.2 136 75.7
SGA_v2.0_scaffold66G22455 Striga asiatica HOM05D003245 ORTHO05D004125 8.8e-43 177.2 136 75.0
Gohir.A10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.1e-42 176.8 136 72.8
TAR626G1505 Trochodendron aralioides HOM05D003245 ORTHO05D004125 1.5e-42 176.4 136 74.3
CiPaw.07G191800 Carya illinoinensis HOM05D003245 ORTHO05D004125 2.0e-42 176.0 136 75.0
Duzib160G0168 Durio zibethinus HOM05D003245 ORTHO05D004125 2.0e-42 176.0 136 73.5
CSS0020996 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 5.7e-42 174.5 127 77.2
HanXRQChr12g0365401 Helianthus annuus HOM05D003245 ORTHO05D004125 5.7e-42 174.5 136 71.3
ATR0580G426 Amborella trichopoda HOM05D003245 ORTHO05D004125 7.4e-42 174.1 136 71.3
MBI14_g17360_MAGBIO Magnolia biondii HOM05D003245 ORTHO05D004125 7.4e-42 174.1 137 71.5
Aqoxy1G01965 Aquilegia oxysepala HOM05D003245 ORTHO05D004125 1.3e-41 173.3 136 72.8
Gorai.005G122000 Gossypium raimondii HOM05D003245 ORTHO05D004125 1.3e-41 173.3 136 72.8
Os05g0437500 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 1.7e-41 172.9 136 72.8
Hma1.2p1_1710F.1_g298640 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 2.2e-41 172.6 129 76.0
MSTRG.26224 Avicennia marina HOM05D003245 ORTHO05D004125 1.4e-40 169.9 136 71.3
CDE02G4007 Ceratophyllum demersum HOM05D003245 ORTHO05D004125 9.1e-40 167.2 136 69.1
Oeu056516.1 Olea europaea HOM05D002774 ORTHO05D000116 2.0e-39 166.0 127 74.0
Zm00001eb289090 Zea mays HOM05D003245 ORTHO05D004125 2.0e-39 166.0 136 71.3
Glyma.17G064000 Glycine max HOM05D003245 ORTHO05D004125 3.4e-39 165.2 123 76.4
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 4.5e-39 164.9 123 75.6
SEGI_27058 Sequoiadendron giganteum HOM05D003245 ORTHO05D004125 5.9e-39 164.5 136 68.4
Actinidia04152 Actinidia chinensis HOM05D003245 ORTHO05D004125 7.7e-39 164.1 122 75.4
Psat4g011760 Pisum sativum HOM05D003245 ORTHO05D004125 7.7e-39 164.1 124 75.0
A03p59700 Brassica napus HOM05D003245 ORTHO05D004125 1.3e-38 163.3 136 72.8
unitig_8.g3424 Utricularia gibba HOM05D003245 ORTHO05D004125 3.8e-38 161.8 134 70.1
AUR62034052 Chenopodium quinoa HOM05D003245 ORTHO05D004125 6.5e-38 161.0 88 92.0
Manes.06G024000 Manihot esculenta HOM05D003245 ORTHO05D004125 2.5e-37 159.1 88 90.9
SalBow1G7127 Salvia bowleyana HOM05D003245 ORTHO05D004125 3.2e-37 158.7 136 65.4
SGA_v2.0_scaffold17G07907 Striga asiatica HOM05D003245 ORTHO05D004125 3.2e-37 158.7 125 72.8
HPP92_001091 Vanilla planifolia HOM05D003245 ORTHO05D004125 3.2e-37 158.7 123 72.4
SalBow6G1711 Salvia bowleyana HOM05D003245 ORTHO05D004125 4.2e-37 158.3 88 92.0
DCAR_014704 Daucus carota HOM05D006247 ORTHO05D007684 1.8e-35 152.9 120 73.3
Dinv23253 Davidia involucrata HOM05D003245 ORTHO05D004125 3.0e-35 152.1 134 65.7
Gohir.D02G107400 Gossypium hirsutum HOM05D003245 ORTHO05D004125 5.1e-35 151.4 127 68.5
MBI16_g35929_MAGBIO Magnolia biondii HOM05D000126 ORTHO05D000085 2.2e-33 146.0 119 69.7
Mapoly0113s0010 Marchantia polymorpha HOM05D003245 ORTHO05D004125 3.1e-32 142.1 136 58.1
GSVIVG01016111001 Vitis vinifera HOM05D003245 ORTHO05D004125 9.1e-32 140.6 133 60.2
HPP92_003207 Vanilla planifolia HOM05D003245 ORTHO05D004125 1.5e-31 139.8 123 65.9
CBR_g23822 Chara braunii HOM05D003245 ORTHO05D004125 4.5e-31 138.3 136 57.4
Pp3c11_7990 Physcomitrium patens HOM05D003245 ORTHO05D004125 2.9e-30 135.6 136 57.4
SalBow6G0700 Salvia bowleyana HOM05D003245 ORTHO05D004125 2.9e-30 135.6 75 89.3
Pp3c7_23160 Physcomitrium patens HOM05D003245 ORTHO05D004125 1.1e-29 133.7 133 57.1
Pp3c7_23220 Physcomitrium patens HOM05D003245 ORTHO05D004125 1.1e-29 133.7 133 57.1
SMO146G0102 Selaginella moellendorffii HOM05D003245 ORTHO05D004125 1.4e-29 133.3 133 57.1
RcHm_v2.0_Chr4g0439321 Rosa chinensis HOM05D003245 ORTHO05D004125 9.7e-26 120.6 75 81.3
Sopen07g007360 Solanum pennellii HOM05D003245 ORTHO05D004125 2.2e-25 119.4 101 71.3
BcaNung00534 Brassica carinata HOM05D003245 ORTHO05D004125 3.7e-25 118.6 117 62.4
BraA03t15022Z Brassica rapa HOM05D003245 ORTHO05D004125 1.4e-24 116.7 88 75.0
SMO364G0848 Selaginella moellendorffii HOM05D003245 ORTHO05D004125 1.8e-24 116.3 133 48.9
FAN17G0462 Fragaria x ananassa HOM05D003245 ORTHO05D004125 3.6e-20 102.1 60 86.7
Gohir.A02G090301 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.0e-19 100.5 64 79.7
C07p57720 Brassica napus HOM05D003245 ORTHO05D004125 2.6e-18 95.9 136 51.5
Cre07.g326400 Chlamydomonas reinhardtii HOM05D003245 ORTHO05D004125 4.8e-17 91.7 130 44.6
PRCOL_00000817 Prasinoderma coloniale HOM05D003245 ORTHO05D004125 5.3e-16 88.2 135 40.0
BolC7t46233H Brassica oleracea HOM05D003245 ORTHO05D004125 1.5e-13 80.1 60 70.0
MCO01G262 Micromonas commoda HOM05D003245 ORTHO05D004125 6.8e-11 71.2 128 35.9
unitig_22.g6851 Utricularia gibba HOM05D003245 ORTHO05D004125 1.7e-09 66.6 68 61.8


User provided reference genes

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