Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 0.0e+00 1163.7 604 100.0
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 0.0e+00 1110.5 604 95.4
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 0.0e+00 1105.9 604 95.0
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 0.0e+00 1100.9 604 94.7
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 0.0e+00 1097.4 604 94.4
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 0.0e+00 1089.7 604 94.2
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 6.5e-308 1060.1 607 92.1
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 1.3e-284 982.6 604 83.1
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.0e-281 971.1 602 82.4
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 4.0e-281 971.1 600 83.2
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 5.2e-281 970.7 602 83.6
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 5.2e-281 970.7 602 82.6
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 5.7e-280 967.2 602 82.6
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 7.5e-280 966.8 602 83.6
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 9.8e-280 966.5 602 82.4
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 1.7e-279 965.7 602 82.7
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.4e-278 962.6 602 81.6
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 3.2e-278 961.4 658 77.8
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 2.3e-276 955.3 621 80.4
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 8.6e-276 953.4 602 81.2
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 4.3e-275 951.0 602 81.1
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 7.3e-275 950.3 602 80.1
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 8.9e-273 943.3 604 79.8
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 2.2e-271 938.7 602 80.2
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 6.4e-271 937.2 610 79.2
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.1e-270 936.4 598 80.3
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 4.1e-270 934.5 593 79.9
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 4.1e-270 934.5 602 79.6
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 4.1e-270 934.5 618 77.8
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 7.0e-270 933.7 602 79.4
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 1.2e-269 932.9 589 81.3
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.7e-269 931.8 602 79.7
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.7e-269 931.8 602 79.4
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 3.5e-269 931.4 602 79.7
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 1.0e-268 929.9 609 79.1
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 6.6e-268 927.2 594 79.6
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.9e-267 925.6 605 79.2
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.6e-266 922.5 593 79.4
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 2.1e-266 922.2 626 76.5
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 8.1e-266 920.2 599 78.1
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 1.1e-265 919.8 496 96.0
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.2e-264 916.4 601 77.9
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 2.6e-264 915.2 603 77.8
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 5.8e-264 914.1 650 74.2
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 9.9e-264 913.3 571 82.8
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 1.3e-263 912.9 602 77.4
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.3e-263 912.9 602 78.4
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 1.7e-263 912.5 604 77.8
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.2e-261 906.4 596 78.7
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.7e-261 905.2 603 77.3
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 1.3e-260 902.9 597 77.7
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.1e-259 899.8 602 76.6
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 1.9e-259 899.0 595 77.1
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 2.5e-259 898.7 604 76.0
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 4.3e-259 897.9 602 76.1
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 5.6e-259 897.5 602 76.2
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 5.6e-259 897.5 600 76.0
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 7.3e-259 897.1 622 75.6
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 9.5e-259 896.7 607 75.8
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 1.2e-258 896.3 602 76.1
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 1.2e-258 896.3 602 76.1
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 1.2e-258 896.3 602 76.1
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.2e-258 896.3 602 76.1
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 1.6e-258 896.0 597 76.9
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 2.8e-258 895.2 567 79.9
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 4.7e-258 894.4 607 75.8
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 8.1e-258 893.6 597 77.2
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.1e-257 893.3 607 75.3
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.1e-257 893.3 600 75.8
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 1.8e-257 892.5 600 75.8
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 1.8e-257 892.5 597 76.7
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 5.2e-257 891.0 602 75.7
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 5.2e-257 891.0 607 75.1
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 8.9e-257 890.2 603 75.8
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 1.2e-256 889.8 603 76.5
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.5e-256 889.4 607 75.5
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.4e-256 887.9 544 82.5
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 9.9e-256 886.7 599 75.3
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 1.7e-255 885.9 607 75.0
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 1.7e-255 885.9 593 76.1
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 2.2e-255 885.6 607 75.3
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.8e-255 884.8 600 76.7
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 4.9e-255 884.4 607 74.8
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 6.4e-255 884.0 683 70.1
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 8.4e-255 883.6 604 74.7
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 2.4e-254 882.1 600 76.5
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 3.2e-254 881.7 598 75.8
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 3.2e-254 881.7 600 76.2
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 5.4e-254 880.9 602 74.9
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 7.1e-254 880.6 614 75.2
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 2.3e-252 875.5 615 75.9
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 3.0e-252 875.2 598 75.1
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 1.5e-251 872.8 643 72.9
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 2.5e-251 872.1 597 76.4
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 4.3e-251 871.3 601 74.2
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 1.3e-247 859.8 602 72.9
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 3.8e-247 858.2 599 74.0
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 3.2e-246 855.1 598 73.7
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 9.3e-246 853.6 622 71.5
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 2.7e-245 852.0 604 72.8
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 4.6e-245 851.3 604 72.7
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.3e-242 843.2 599 74.8
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 6.2e-242 840.9 578 75.1
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.1e-241 840.1 597 73.7
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 7.6e-240 833.9 565 75.8
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.5e-237 825.1 564 76.8
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 1.2e-232 810.1 656 64.5
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.3e-231 806.6 595 71.9
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.1e-230 803.5 595 71.4
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 1.8e-225 786.2 604 68.7
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.8e-220 769.6 502 77.5
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.1e-213 746.1 480 80.2
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.0e-212 743.8 605 65.6
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 1.7e-210 736.5 599 63.1
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.4e-209 732.6 478 77.6
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 9.1e-209 730.7 600 62.7
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 3.3e-195 685.6 440 80.9
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.2e-191 672.9 553 66.7
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.4e-188 663.7 429 78.1
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.5e-182 643.7 502 67.5
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 6.3e-170 601.7 605 52.7
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.1e-166 590.9 316 98.1
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 4.7e-165 585.5 576 53.8
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 7.5e-163 578.2 602 51.5
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 4.4e-155 552.4 439 64.0
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.6e-152 543.9 288 97.2
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 4.1e-145 519.2 366 73.8
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 4.7e-141 505.8 332 78.0
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 9.2e-137 491.5 610 46.6
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 4.6e-136 489.2 418 61.5
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.9e-129 467.2 529 53.5
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 8.7e-127 458.4 577 44.9
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 5.1e-119 432.6 281 81.5
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 9.6e-110 401.7 250 79.2
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 5.1e-103 379.4 437 49.9
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 7.2e-97 359.0 316 62.3
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.8e-92 344.4 273 67.8
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 1.3e-69 268.5 658 31.5
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.5e-67 260.0 183 75.4
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 1.7e-66 258.1 558 33.7
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 6.8e-63 246.1 157 79.0
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 5.7e-62 243.0 155 79.4
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 2.9e-58 230.7 155 76.1
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.4e-44 184.5 102 91.2
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.2e-43 182.2 107 86.9
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.1e-39 167.5 96 87.5
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 6.0e-35 153.3 629 26.7
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 1.4e-31 142.1 97 72.2
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.7e-29 135.2 120 55.0
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 4.9e-29 133.7 186 43.0
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.2e-27 129.0 69 85.5
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 6.0e-27 126.7 97 60.8
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.5e-25 122.1 66 90.9
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 3.4e-22 110.9 72 69.4
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 1.1e-17 95.9 640 23.3
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 1.1e-17 95.9 199 36.7
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.5e-17 95.5 78 56.4
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 1.9e-17 95.1 62 80.6
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.6e-16 90.9 95 58.9
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 1.5e-14 85.5 55 78.2
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 1.7e-13 82.0 49 83.7
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 8.4e-13 79.7 48 83.3
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 1.4e-12 79.0 71 50.7
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.9e-09 68.6 55 67.3
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 2.5e-09 68.2 55 67.3


User provided reference genes

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