Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 5.2e-254 880.6 446 100.0
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 6.7e-201 704.1 447 81.4
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 1.4e-198 696.4 447 81.2
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.4e-198 696.4 447 81.4
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 4.1e-198 694.9 447 80.3
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 1.9e-195 686.0 447 79.4
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.3e-183 646.7 444 78.6
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 5.4e-134 481.9 437 58.6
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 1.7e-132 476.9 430 60.7
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 7.3e-131 471.5 447 57.7
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 9.5e-131 471.1 437 58.6
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 9.5e-131 471.1 441 58.3
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 6.2e-130 468.4 456 56.4
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 1.4e-129 467.2 437 58.6
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 3.1e-129 466.1 447 57.3
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 2.0e-128 463.4 431 58.7
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 2.6e-128 463.0 439 57.6
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 1.7e-127 460.3 465 54.0
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 8.4e-127 458.0 456 55.9
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 4.6e-125 452.2 443 55.8
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 6.0e-125 451.8 435 57.9
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 3.0e-124 449.5 430 56.7
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 5.6e-123 445.3 434 55.5
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 2.1e-122 443.4 422 57.3
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.1e-121 441.0 426 57.0
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 1.4e-121 440.7 437 56.3
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 5.3e-121 438.7 436 57.6
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 1.2e-120 437.6 464 53.4
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.0e-120 436.8 438 54.8
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.6e-120 436.4 425 56.5
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 3.4e-120 436.0 437 55.4
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 4.4e-120 435.6 438 54.8
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 9.9e-120 434.5 441 54.4
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 1.7e-119 433.7 438 54.8
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.2e-119 433.3 438 54.6
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 2.2e-119 433.3 427 57.1
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 4.9e-119 432.2 407 59.0
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 8.4e-119 431.4 435 56.8
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 1.1e-118 431.0 454 54.2
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 1.1e-118 431.0 432 56.2
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 1.9e-118 430.3 417 56.1
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.2e-118 429.1 441 54.2
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 1.2e-117 427.6 444 54.1
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 3.5e-117 426.0 439 54.7
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 3.9e-116 422.5 433 54.7
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 5.1e-116 422.2 376 59.6
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 1.9e-115 420.2 432 53.7
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 5.6e-115 418.7 432 55.1
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 2.1e-114 416.8 431 54.3
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 6.2e-114 415.2 445 53.9
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 8.1e-114 414.8 430 55.1
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 1.1e-113 414.5 417 57.1
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 1.4e-113 414.1 451 53.7
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 2.4e-113 413.3 431 54.3
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 3.1e-113 412.9 411 56.7
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 1.2e-112 411.0 430 54.9
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 3.4e-112 409.5 432 54.2
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 5.8e-112 408.7 441 52.2
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 5.8e-112 408.7 427 53.2
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 7.6e-112 408.3 439 53.3
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 1.3e-111 407.5 440 53.0
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 2.2e-111 406.8 437 52.6
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 4.9e-111 405.6 461 51.4
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 8.4e-111 404.8 439 53.5
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.4e-110 404.1 466 51.9
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 2.4e-110 403.3 457 49.2
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 3.2e-110 402.9 432 52.3
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 7.1e-110 401.7 434 53.9
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 4.6e-109 399.1 431 52.7
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 1.3e-108 397.5 374 56.7
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 1.8e-108 397.1 456 49.1
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 5.1e-108 395.6 456 51.5
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 1.9e-107 393.7 363 59.5
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 3.3e-107 392.9 426 52.6
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 7.4e-107 391.7 371 56.1
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 9.6e-107 391.3 435 50.8
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 1.3e-106 391.0 501 47.1
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 8.1e-106 388.3 469 48.2
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.4e-102 377.5 410 51.7
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 1.2e-101 374.4 409 52.3
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 2.1e-98 363.6 392 51.3
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 5.8e-96 355.5 463 47.1
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 7.6e-96 355.1 369 53.9
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 1.3e-95 354.4 414 49.0
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.2e-94 349.7 443 47.2
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 4.2e-94 349.4 365 53.7
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 9.3e-94 348.2 418 49.5
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.8e-92 344.0 370 53.5
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 1.5e-88 330.9 343 54.8
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 1.3e-87 327.8 399 48.1
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.5e-83 314.3 432 46.1
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 7.4e-83 312.0 355 50.4
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 1.3e-79 301.2 431 42.9
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 4.2e-78 296.2 395 46.3
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 3.6e-77 293.1 331 51.1
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 4.7e-77 292.7 444 43.7
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 4.1e-73 279.6 546 36.4
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 7.0e-73 278.9 234 62.0
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 2.9e-71 273.5 293 52.2
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 1.4e-68 264.6 293 52.2
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 1.5e-67 261.2 519 35.1
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 2.0e-67 260.8 363 45.7
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.6e-61 240.0 201 62.7
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 8.0e-61 238.8 207 60.9
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.0e-60 236.9 308 46.8
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 5.2e-60 236.1 456 36.4
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 4.8e-58 229.6 236 54.2
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 2.4e-57 227.3 238 53.4
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 2.0e-56 224.2 334 42.8
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 2.2e-55 220.7 184 61.4
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 8.0e-53 212.2 400 38.8
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 2.0e-51 207.6 433 35.8
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 3.7e-50 203.4 445 35.7
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 4.9e-50 203.0 239 48.1
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 1.0e-44 185.3 320 42.2
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 1.4e-44 184.9 160 60.6
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 2.2e-42 177.6 190 54.7
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 1.5e-38 164.9 196 47.4
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 2.5e-38 164.1 151 57.0
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 3.1e-36 157.1 436 31.4
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 6.8e-36 156.0 254 40.6
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.4e-33 148.3 108 64.8
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 6.6e-31 139.4 99 71.7
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 1.5e-30 138.3 129 55.8
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 1.8e-28 131.3 110 58.2
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 4.4e-27 126.7 439 28.2
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 5.8e-27 126.3 125 53.6
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 1.4e-25 121.7 429 25.6
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 2.4e-25 120.9 97 62.9
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 4.1e-25 120.2 174 44.3
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 2.1e-24 117.9 825 21.9
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 1.3e-23 115.2 107 56.1
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.1e-22 112.1 160 46.9
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 2.8e-21 107.5 156 42.3
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 4.6e-16 90.1 96 51.0
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 2.2e-10 71.2 305 28.5
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 1.9e-09 68.2 309 25.6
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 3.0e-07 60.8 290 25.9
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 5.6e-06 56.6 64 50.0


User provided reference genes

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