Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 0.0e+00 1410.6 766 100.0
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 0.0e+00 1336.2 759 96.0
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 5.2e-312 1074.7 790 73.8
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 7.9e-311 1070.1 790 73.4
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 5.4e-307 1057.4 837 68.9
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 1.3e-284 983.0 759 72.9
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 1.6e-242 843.2 817 60.0
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 7.9e-234 814.3 789 58.7
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 8.2e-223 777.7 810 55.7
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 2.0e-216 756.5 805 54.5
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 4.4e-216 755.4 803 54.4
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 7.7e-213 744.6 804 53.2
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 3.8e-212 742.3 804 52.9
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 1.9e-211 740.0 807 56.3
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 2.5e-211 739.6 810 54.0
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.7e-210 735.3 798 56.5
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 6.1e-210 734.9 791 57.8
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 1.0e-209 734.2 790 55.7
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 1.0e-209 734.2 809 54.5
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.2e-209 731.9 807 53.5
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.2e-209 731.9 807 53.8
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 1.5e-208 730.3 799 52.8
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 4.8e-207 725.3 806 53.0
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 1.8e-206 723.4 819 51.9
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 2.4e-206 723.0 806 52.9
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 5.3e-206 721.8 800 52.9
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.5e-205 719.2 803 53.2
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 5.0e-204 715.3 804 52.4
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 1.1e-203 714.1 802 53.0
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 1.9e-203 713.4 824 52.1
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.2e-202 710.7 810 53.0
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 2.7e-202 709.5 806 52.7
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 5.2e-201 705.3 811 52.4
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 5.2e-201 705.3 821 51.9
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 6.7e-201 704.9 803 52.3
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 8.8e-201 704.5 794 51.5
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 5.7e-200 701.8 802 52.2
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 9.7e-200 701.0 803 51.9
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 6.3e-199 698.4 822 51.5
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 4.1e-198 695.7 658 58.5
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 7.0e-198 694.9 819 53.5
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 5.9e-197 691.8 802 51.9
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.7e-197 691.4 794 52.9
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 5.0e-196 688.7 806 51.9
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 4.7e-194 682.2 794 50.6
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.8e-193 680.2 794 50.6
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 8.8e-193 677.9 944 46.1
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.6e-192 676.4 794 52.3
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 2.6e-192 676.4 831 48.5
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 1.8e-190 670.2 808 51.2
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 3.5e-189 666.0 843 52.1
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 6.6e-188 661.8 803 51.9
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 1.0e-185 654.4 726 53.4
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.7e-183 647.1 812 49.9
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 2.2e-183 646.7 812 49.8
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 3.7e-183 646.0 791 49.4
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 2.0e-181 640.2 800 51.5
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 2.7e-181 639.8 830 51.3
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 1.0e-180 637.9 821 49.6
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 3.8e-180 636.0 808 49.3
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 6.6e-180 635.2 792 50.3
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.9e-179 633.6 799 47.7
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 3.4e-176 622.9 786 52.3
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 3.7e-175 619.4 798 49.7
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 1.9e-174 617.1 769 48.9
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 4.1e-174 615.9 811 48.2
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 5.4e-174 615.5 436 71.8
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 4.6e-173 612.5 773 48.8
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 3.9e-172 609.4 729 50.1
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 3.3e-171 606.3 803 47.9
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 3.1e-169 599.7 771 47.1
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 2.9e-167 593.2 675 53.3
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 4.9e-167 592.4 825 46.8
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.6e-165 587.4 793 47.3
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 3.5e-165 586.3 662 51.5
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 7.8e-165 585.1 823 48.1
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.7e-164 583.9 493 63.3
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 5.1e-164 582.4 798 47.4
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 6.6e-164 582.0 813 45.1
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 3.3e-163 579.7 795 46.8
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 4.3e-163 579.3 787 51.6
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 2.1e-162 577.0 503 62.4
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 2.8e-162 576.6 785 47.0
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 3.1e-161 573.2 794 45.3
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 4.0e-161 572.8 731 50.8
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 4.0e-161 572.8 792 44.8
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 8.9e-161 571.6 652 50.6
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 7.5e-160 568.5 779 47.1
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 1.3e-159 567.8 646 53.7
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 8.3e-159 565.1 650 53.5
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 1.2e-157 561.2 663 49.5
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 1.6e-157 560.8 637 51.5
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 2.3e-156 557.0 1011 39.4
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 8.6e-156 555.1 794 44.1
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.1e-155 554.7 391 70.8
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 4.0e-153 546.2 440 63.9
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 6.8e-153 545.4 757 50.2
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 8.9e-153 545.0 802 45.0
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 1.3e-151 541.2 664 49.1
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.1e-150 538.1 793 44.8
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 5.4e-150 535.8 669 48.9
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 7.1e-150 535.4 667 48.7
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 2.1e-149 533.9 676 48.2
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 4.6e-149 532.7 687 53.0
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.4e-145 520.4 322 77.3
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 9.0e-145 518.5 326 77.0
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 3.4e-144 516.5 326 75.5
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 3.4e-144 516.5 814 46.1
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 9.3e-142 508.4 322 76.4
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 1.1e-139 501.5 324 75.0
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 2.5e-139 500.4 373 67.0
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 2.1e-138 497.3 452 64.2
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 1.9e-134 484.2 806 42.9
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.7e-132 475.7 633 51.3
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 8.1e-130 468.8 353 66.3
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 8.1e-130 468.8 353 66.3
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 1.2e-128 464.9 330 67.9
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 3.5e-125 453.4 654 47.7
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 1.1e-123 448.4 615 47.5
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 7.4e-123 445.7 332 64.5
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.6e-122 444.5 389 61.2
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 2.4e-121 440.7 349 63.9
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.4e-121 440.7 491 51.9
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 1.7e-119 434.5 277 76.5
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 6.5e-119 432.6 794 39.2
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 1.3e-116 424.9 349 62.5
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 6.7e-116 422.5 832 35.6
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 1.9e-115 421.0 298 69.8
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 5.7e-115 419.5 322 63.7
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 3.1e-105 387.1 409 50.1
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.5e-104 384.8 411 52.8
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 2.2e-103 380.9 257 71.6
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 7.4e-99 365.9 423 50.8
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.3e-95 355.1 418 48.3
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 1.7e-95 354.8 447 47.7
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 6.7e-92 342.8 668 37.9
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 1.8e-89 334.7 420 46.9
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 4.2e-86 323.6 414 45.7
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.1e-85 321.2 241 71.8
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.0e-84 318.9 470 43.4
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 9.8e-75 285.8 569 50.6
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 1.1e-70 272.3 475 41.9
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 2.6e-67 261.2 174 71.3
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 3.4e-67 260.8 298 47.0
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.4e-65 255.4 250 53.6
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.8e-65 255.0 169 72.2
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 3.4e-59 234.2 178 65.7
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 7.8e-56 223.0 584 33.9
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 1.3e-55 222.2 174 66.1
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 6.6e-55 219.9 165 63.6
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 2.5e-54 218.0 385 36.6
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 9.5e-54 216.1 482 34.6
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 1.4e-52 212.2 290 40.3
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 8.9e-52 209.5 469 40.3
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 2.1e-48 198.4 414 37.0
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 2.5e-46 191.4 465 35.7
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.3e-42 179.1 134 63.4
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 7.1e-41 173.3 127 64.6
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 4.6e-40 170.6 101 81.2
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 3.9e-39 167.5 341 37.0
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 3.9e-39 167.5 306 35.6
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 3.3e-38 164.5 468 33.5
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 3.6e-37 161.0 451 30.8
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 3.4e-35 154.5 85 83.5
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.7e-32 144.8 357 34.7
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.2e-27 129.4 454 32.8
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 3.0e-23 114.8 63 82.5
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 1.4e-20 105.9 137 47.4
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 1.4e-20 105.9 62 82.3
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.7e-18 99.0 127 50.4
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 4.9e-18 97.4 65 69.2
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.4e-17 95.9 468 29.3
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.2e-16 92.8 53 79.2
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 7.4e-14 83.6 48 77.1
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 7.1e-09 67.0 39 79.5
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 2.7e-08 65.1 230 32.2
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.0e-07 63.2 56 60.7
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 1.8e-07 62.4 32 87.5
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 6.7e-07 60.5 52 59.6
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 1.9e-06 58.9 32 71.9
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.5e-06 58.5 47 63.8


User provided reference genes

Program Settings