Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006624g0010 Nicotiana tabacum HOM05D003245 ORTHO05D049326 6.4e-96 354.0 168 100.0
Nitab4.5_0024961g0020 Nicotiana tabacum HOM05D003245 ORTHO05D049326 8.8e-45 184.1 108 85.2
Nitab4.5_0025199g0010 Nicotiana tabacum HOM05D003245 ORTHO05D004125 3.3e-44 182.2 108 85.2
Hma1.2p1_1710F.1_g298640 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 9.8e-12 74.3 77 51.9
arahy.Tifrunner.gnm1.ann1.6TSM6Q Arachis hypogaea HOM05D003245 ORTHO05D004125 2.9e-11 72.8 76 53.9
arahy.Tifrunner.gnm1.ann1.LWG93W Arachis hypogaea HOM05D003245 ORTHO05D004125 2.9e-11 72.8 76 53.9
Cfa013513 Carpinus fangiana HOM05D003245 ORTHO05D004125 2.9e-11 72.8 80 48.8
Haze_22109 Corylus avellana HOM05D003245 ORTHO05D004125 2.9e-11 72.8 80 48.8
ATR0580G426 Amborella trichopoda HOM05D003245 ORTHO05D004125 3.7e-11 72.4 71 53.5
Gohir.A05G113700 Gossypium hirsutum HOM05D003245 ORTHO05D004125 3.7e-11 72.4 71 56.3
Potri.018G093800 Populus trichocarpa HOM05D003245 ORTHO05D004125 3.7e-11 72.4 75 53.3
Cc06_g13310 Coffea canephora HOM05D003245 ORTHO05D004125 4.9e-11 72.0 87 48.3
Lj4g0022126 Lotus japonicus HOM05D003245 ORTHO05D004125 4.9e-11 72.0 66 56.1
GSVIVG01029199001 Vitis vinifera HOM05D003245 ORTHO05D004125 4.9e-11 72.0 71 54.9
CANSAT11G2281 Cannabis sativa HOM05D003245 ORTHO05D004125 6.4e-11 71.6 71 54.9
PGR102G0922 Punica granatum HOM05D003245 ORTHO05D004125 6.4e-11 71.6 74 54.1
Sc18g0007470 Simmondsia chinensis HOM05D003245 ORTHO05D004125 6.4e-11 71.6 71 54.9
unitig_22.g6851 Utricularia gibba HOM05D003245 ORTHO05D004125 6.4e-11 71.6 71 56.3
CiPaw.08G036800 Carya illinoinensis HOM05D003245 ORTHO05D004125 8.3e-11 71.2 71 54.9
Glyma.13G096100 Glycine max HOM05D003245 ORTHO05D004125 8.3e-11 71.2 71 54.9
Manes.06G024000 Manihot esculenta HOM05D003245 ORTHO05D004125 8.3e-11 71.2 71 54.9
Manes.14G150500 Manihot esculenta HOM05D003245 ORTHO05D004125 8.3e-11 71.2 61 57.4
Peaxi162Scf00231g00812 Petunia axillaris HOM05D003245 ORTHO05D004125 8.3e-11 71.2 74 52.7
QL02p097606 Quercus lobata HOM05D003245 ORTHO05D004125 8.3e-11 71.2 71 54.9
unitig_8.g3424 Utricularia gibba HOM05D003245 ORTHO05D004125 8.3e-11 71.2 71 54.9
VMungo1215G1658 Vigna mungo HOM05D003245 ORTHO05D004125 8.3e-11 71.2 71 54.9
Actinidia35994 Actinidia chinensis HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
Ah.08g212150 Amaranthus hybridus HOM05D003245 ORTHO05D004125 1.1e-10 70.9 74 54.1
AL7G21890 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
AT4G30260 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
Carub.0003s3307 Capsella rubella HOM05D003245 ORTHO05D004125 1.1e-10 70.9 92 46.7
Carub.0007s1035 Capsella rubella HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
CAN.G32.5 Capsicum annuum HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
CAN.G5.10 Capsicum annuum HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
AUR62040631 Chenopodium quinoa HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
ClCG01G005520 Citrullus lanatus HOM05D003245 ORTHO05D004125 1.1e-10 70.9 87 49.4
Ciclev10009141m.g Citrus clementina HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
Dinv42729 Davidia involucrata HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
Dinv43372 Davidia involucrata HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
Thhalv10025913m.g Eutrema salsugineum HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
FvH4_4g09840 Fragaria vesca HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
FAN12G1523 Fragaria x ananassa HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
FAN12G3343 Fragaria x ananassa HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
FAN22G0867 Fragaria x ananassa HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
Glyma.17G064000 Glycine max HOM05D003245 ORTHO05D004125 1.1e-10 70.9 76 51.3
Hma1.2p1_2478F.1_g322920 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
MBI14_g17360_MAGBIO Magnolia biondii HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
MD13G1256000 Malus domestica HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
MD13G1256300 Malus domestica HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
Nitab4.5_0004307g0020 Nicotiana tabacum HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
Phvul.003G146500 Phaseolus vulgaris HOM05D003245 ORTHO05D004125 1.1e-10 70.9 76 51.3
Prupe.1G086600 Prunus persica HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
RcHm_v2.0_Chr4g0402611 Rosa chinensis HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
Sabra18G0080700 Salix brachista HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
Sp7g28140 Schrenkiella parvula HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
Solyc07g018210.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
Solyc07g018220.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
PGSC0003DMG400002422 Solanum tuberosum HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
PGSC0003DMG401002421 Solanum tuberosum HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
TWI12G0523 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 1.1e-10 70.9 71 54.9
TAR626G1505 Trochodendron aralioides HOM05D003245 ORTHO05D004125 1.1e-10 70.9 74 52.7
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 1.4e-10 70.5 71 54.9
MELO3C005378.2 Cucumis melo HOM05D003245 ORTHO05D004125 1.4e-10 70.5 76 51.3
CsaV3_5G005750 Cucumis sativus L. HOM05D003245 ORTHO05D004125 1.4e-10 70.5 76 51.3
Duzib192G0054 Durio zibethinus HOM05D003245 ORTHO05D004125 1.4e-10 70.5 71 54.9
Duzib235G0677 Durio zibethinus HOM05D003245 ORTHO05D004125 1.4e-10 70.5 71 54.9
Gohir.D05G114100 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.4e-10 70.5 71 54.9
Gorai.009G118100 Gossypium raimondii HOM05D003245 ORTHO05D004125 1.4e-10 70.5 71 54.9
Lsat_1_v5_gn_8_67041 Lactuca sativa HOM05D003245 ORTHO05D004125 1.4e-10 70.5 74 54.1
Nitab4.5_0007820g0020 Nicotiana tabacum HOM05D003245 ORTHO05D004125 1.4e-10 70.5 107 42.1
Os01g0867700 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 1.4e-10 70.5 71 54.9
Sabra06G0130400 Salix brachista HOM05D003245 ORTHO05D004125 1.4e-10 70.5 71 54.9
SalBow6G0700 Salvia bowleyana HOM05D003245 ORTHO05D004125 1.4e-10 70.5 71 53.5
SalBow6G1711 Salvia bowleyana HOM05D003245 ORTHO05D004125 1.4e-10 70.5 71 53.5
THA.LOC104803937 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 1.4e-10 70.5 71 54.9
THA.LOC104819980 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 1.4e-10 70.5 71 54.9
Thecc.06G060900 Theobroma cacao HOM05D003245 ORTHO05D004125 1.4e-10 70.5 71 54.9
Zm00001eb146670 Zea mays HOM05D003245 ORTHO05D004125 1.4e-10 70.5 71 53.5
Zm00001eb366670 Zea mays HOM05D003245 ORTHO05D004125 1.4e-10 70.5 71 54.9
MSTRG.19702 Avicennia marina HOM05D003245 ORTHO05D004125 1.8e-10 70.1 69 55.1
CSS0017554 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 1.8e-10 70.1 71 53.5
CiPaw.07G191800 Carya illinoinensis HOM05D003245 ORTHO05D004125 1.8e-10 70.1 75 52.0
Potri.006G169200 Populus trichocarpa HOM05D003245 ORTHO05D004125 1.8e-10 70.1 71 53.5
TPR.G5416 Trifolium pratense HOM05D003245 ORTHO05D004125 1.8e-10 70.1 79 50.6
Dinv41253 Davidia involucrata HOM05D003245 ORTHO05D004125 2.4e-10 69.7 61 57.4
ECA236G4509 Erigeron canadensis HOM05D003245 ORTHO05D004125 2.4e-10 69.7 71 53.5
HanXRQChr09g0254481 Helianthus annuus HOM05D003245 ORTHO05D004125 2.4e-10 69.7 74 52.7
Lj7A472T61 Lonicera japonica HOM05D003245 ORTHO05D004125 2.4e-10 69.7 71 53.5
Sp3g32300 Schrenkiella parvula HOM05D003245 ORTHO05D004125 2.4e-10 69.7 61 57.4
vmacro13120 Vaccinium macrocarpon HOM05D003245 ORTHO05D004125 2.4e-10 69.7 61 57.4
Atru.chr7.659 Acer truncatum HOM05D003245 ORTHO05D004125 3.2e-10 69.3 69 55.1
Aqoxy1G01965 Aquilegia oxysepala HOM05D003245 ORTHO05D004125 3.2e-10 69.3 71 53.5
Migut.J01473 Erythranthe guttata HOM05D003245 ORTHO05D004125 3.2e-10 69.3 71 52.1
Oeu049685.1 Olea europaea HOM05D003245 ORTHO05D004125 3.2e-10 69.3 71 53.5
SGA_v2.0_scaffold66G22455 Striga asiatica HOM05D003245 ORTHO05D004125 3.2e-10 69.3 71 53.5
TWI12G0425 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 3.2e-10 69.3 71 53.5
CDE02G4007 Ceratophyllum demersum HOM05D003245 ORTHO05D004125 4.1e-10 68.9 71 53.5
CDE04G1421 Ceratophyllum demersum HOM05D000126 ORTHO05D000085 4.1e-10 68.9 71 53.5
Migut.K00245 Erythranthe guttata HOM05D003245 ORTHO05D004125 4.1e-10 68.9 61 55.7
HanXRQChr09g0245001 Helianthus annuus HOM05D003245 ORTHO05D004125 4.1e-10 68.9 64 54.7
Lalb_Chr12g0199351 Lupinus albus HOM05D003245 ORTHO05D004125 4.1e-10 68.9 61 55.7
SEGI_27058 Sequoiadendron giganteum HOM05D003245 ORTHO05D004125 4.1e-10 68.9 61 55.7
AL3G53110 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 5.4e-10 68.6 69 55.1
AT2G18840 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 5.4e-10 68.6 69 55.1
CARHR109400 Cardamine hirsuta HOM05D003245 ORTHO05D004125 5.4e-10 68.6 69 55.1
Cpa.g.sc95.57 Carica papaya HOM05D003245 ORTHO05D004125 5.4e-10 68.6 61 55.7
Ca_21218_v3 Cicer arietinum L. HOM05D003245 ORTHO05D004125 5.4e-10 68.6 76 51.3
ECA240G1971 Erigeron canadensis HOM05D003245 ORTHO05D004125 5.4e-10 68.6 61 55.7
Medtr4g128290 Medicago truncatula HOM05D003245 ORTHO05D004125 5.4e-10 68.6 76 51.3
Hund22399 Selenicereus undatus HOM05D003245 ORTHO05D004125 5.4e-10 68.6 69 55.1
Sopen07g007320 Solanum pennellii HOM05D003245 ORTHO05D004125 5.4e-10 68.6 69 55.1
Sopen07g007330 Solanum pennellii HOM05D003245 ORTHO05D004125 5.4e-10 68.6 69 55.1
CARHR238170 Cardamine hirsuta HOM05D003245 ORTHO05D004125 7.0e-10 68.2 86 48.8
Duzib160G0168 Durio zibethinus HOM05D003245 ORTHO05D004125 7.0e-10 68.2 61 54.1
Lj9C686G6 Lonicera japonica HOM05D003245 ORTHO05D004125 7.0e-10 68.2 61 54.1
Lalb_Chr07g0180421 Lupinus albus HOM05D003245 ORTHO05D004125 7.0e-10 68.2 61 55.7
Rhsim01G0005500 Rhododendron simsii HOM05D003245 ORTHO05D004125 7.0e-10 68.2 61 57.4
TAR383G0562 Trochodendron aralioides HOM05D003245 ORTHO05D004125 7.0e-10 68.2 71 53.5
Zm00001eb289090 Zea mays HOM05D003245 ORTHO05D004125 7.0e-10 68.2 79 48.1
MSTRG.6209 Avicennia marina HOM05D003245 ORTHO05D004125 9.2e-10 67.8 65 56.9
EL10Ac8g19425 Beta vulgaris HOM05D003245 ORTHO05D004125 9.2e-10 67.8 74 52.7
CSS0020996 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 9.2e-10 67.8 61 54.1
DCAR_014704 Daucus carota HOM05D006247 ORTHO05D007684 9.2e-10 67.8 65 56.9
Dinv23253 Davidia involucrata HOM05D003245 ORTHO05D004125 9.2e-10 67.8 67 53.7
BcaB03g12640 Brassica carinata HOM05D003245 ORTHO05D004125 1.2e-09 67.4 71 53.5
BcaC01g01161 Brassica carinata HOM05D003245 ORTHO05D004125 1.2e-09 67.4 71 53.5
BcaC09g51810 Brassica carinata HOM05D003245 ORTHO05D004125 1.2e-09 67.4 71 53.5
BcaNung03004 Brassica carinata HOM05D003245 ORTHO05D004125 1.2e-09 67.4 71 53.5
A08p19320 Brassica napus HOM05D003245 ORTHO05D004125 1.2e-09 67.4 71 53.5
C01p08790 Brassica napus HOM05D003245 ORTHO05D004125 1.2e-09 67.4 71 53.5
C03p88780 Brassica napus HOM05D003245 ORTHO05D004125 1.2e-09 67.4 71 53.5
BolC1t00869H Brassica oleracea HOM05D003245 ORTHO05D004125 1.2e-09 67.4 71 53.5
BolC3t21189H Brassica oleracea HOM05D003245 ORTHO05D004125 1.2e-09 67.4 71 53.5
BraA08t33893Z Brassica rapa HOM05D003245 ORTHO05D004125 1.2e-09 67.4 71 53.5
Lsat_1_v5_gn_7_54500 Lactuca sativa HOM05D003245 ORTHO05D004125 1.2e-09 67.4 74 51.4
Sed0003509 Sechium edule HOM05D003245 ORTHO05D004125 1.2e-09 67.4 64 54.7
Sed0004345 Sechium edule HOM05D003245 ORTHO05D004125 1.6e-09 67.0 69 53.6
BraA01t00734Z Brassica rapa HOM05D003245 ORTHO05D004125 2.0e-09 66.6 71 52.1
SGA_v2.0_scaffold17G07907 Striga asiatica HOM05D003245 ORTHO05D004125 2.0e-09 66.6 74 44.6
Aa31LG8G15930 Aethionema arabicum HOM05D003245 ORTHO05D004125 2.7e-09 66.2 92 44.6
PSO541G0246 Papaver somniferum HOM05D003245 ORTHO05D004125 2.7e-09 66.2 61 55.7
PSO675G6578 Papaver somniferum HOM05D003245 ORTHO05D004125 2.7e-09 66.2 61 55.7
FAN07G1981 Fragaria x ananassa HOM05D003245 ORTHO05D004125 3.5e-09 65.9 69 53.6
SGA_v2.0_scaffold12G06064 Striga asiatica HOM05D003245 ORTHO05D004125 4.6e-09 65.5 61 52.5
HPP92_003207 Vanilla planifolia HOM05D003245 ORTHO05D004125 5.9e-09 65.1 89 43.8
MSTRG.26224 Avicennia marina HOM05D003245 ORTHO05D004125 1.0e-08 64.3 68 47.1
HanXRQChr12g0365401 Helianthus annuus HOM05D003245 ORTHO05D004125 1.0e-08 64.3 61 54.1
MBI16_g35929_MAGBIO Magnolia biondii HOM05D000126 ORTHO05D000085 1.0e-08 64.3 61 52.5
Os05g0437500 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 1.3e-08 63.9 71 52.1
A01p07880 Brassica napus HOM05D003245 ORTHO05D004125 3.9e-08 62.4 71 50.7
Oeu042156.1 Olea europaea HOM05D003245 ORTHO05D004125 3.9e-08 62.4 95 43.2
Gohir.A10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 6.6e-08 61.6 61 54.1
Gohir.D10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 6.6e-08 61.6 61 54.1
Gorai.011G003600 Gossypium raimondii HOM05D003245 ORTHO05D004125 6.6e-08 61.6 61 54.1
Nitab4.5_0026144g0010 Nicotiana tabacum HOM05D003245 ORTHO05D004125 8.6e-08 61.2 43 65.1
Solyc07g018230.2 Solanum lycopersicum HOM05D003245 ORTHO05D004125 1.1e-07 60.8 43 62.8
GSVIVG01016111001 Vitis vinifera HOM05D003245 ORTHO05D004125 1.1e-07 60.8 61 49.2
C01p16400 Brassica napus HOM05D003245 ORTHO05D017662 1.9e-07 60.1 70 51.4
RcHm_v2.0_Chr5g0045341 Rosa chinensis HOM05D003245 ORTHO05D004125 3.6e-06 55.8 77 44.2
Nitab4.5_0024961g0010 Nicotiana tabacum HOM05D003245 ORTHO05D004125 4.7e-06 55.5 38 63.2
SalBow1G7127 Salvia bowleyana HOM05D003245 ORTHO05D004125 4.7e-06 55.5 72 45.8


User provided reference genes

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